RNA–Protein interactions for RNA: ENST00000523088.5

HDAC3-216, Transcript of histone deacetylase 3, humanhuman

TSL 3

Gene HDAC3, Length 699 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-216ENST00000523088 DNAH2Q9P225 4427 aa4.64□□□□□ -1.67
HDAC3-216ENST00000523088 TRGV1A0A0A0MS02 117 aa4.64□□□□□ -1.67
HDAC3-216ENST00000523088 PANO1I0J062 215 aa4.64□□□□□ -1.67
HDAC3-216ENST00000523088 TLX1NBP0CAT3 122 aa4.64□□□□□ -1.67
HDAC3-216ENST00000523088 C10orf25Q5T742 122 aa4.64□□□□□ -1.67
HDAC3-216ENST00000523088 PRO0255Q9UI72 69 aa4.64□□□□□ -1.67
HDAC3-216ENST00000523088 DNAH17Q9UFH2 4485 aa4.63□□□□□ -1.67
HDAC3-216ENST00000523088 FAM229AH3BQW9 127 aa4.63□□□□□ -1.67
HDAC3-216ENST00000523088 HERC2O95714 4834 aa4.63□□□□□ -1.67
HDAC3-216ENST00000523088 ST20-AS1Q8NBB2 130 aa4.62□□□□□ -1.67
HDAC3-216ENST00000523088 CDKN2A-AS1Q9UH64 79 aa4.62□□□□□ -1.67
HDAC3-216ENST00000523088 A0A096LPF7 62 aa4.61□□□□□ -1.67
HDAC3-216ENST00000523088 SMIM1B2RUZ4 78 aa4.61□□□□□ -1.67
HDAC3-216ENST00000523088 KIAA1109Q2LD37 5005 aa4.6□□□□□ -1.67
HDAC3-216ENST00000523088 DNAH11Q96DT5 4516 aa4.6□□□□□ -1.67
HDAC3-216ENST00000523088 IGKV3OR2-268A0A0C4DH90 116 aa4.6□□□□□ -1.67
HDAC3-216ENST00000523088 COX17Q14061 63 aa4.6□□□□□ -1.67
HDAC3-216ENST00000523088 Q6ZQY7 126 aa4.6□□□□□ -1.67
HDAC3-216ENST00000523088 PKD1P98161 4303 aa4.59□□□□□ -1.67
HDAC3-216ENST00000523088 M0QY20 66 aa4.59□□□□□ -1.67
HDAC3-216ENST00000523088 PRR9Q5T870 116 aa4.59□□□□□ -1.67
HDAC3-216ENST00000523088 Q6ZSN1 163 aa4.59□□□□□ -1.67
HDAC3-216ENST00000523088 KRTAP15-1Q3LI76 137 aa4.58□□□□□ -1.68
HDAC3-216ENST00000523088 DYNC1H1Q14204 4646 aaKnown RBP4.57□□□□□ -1.68
HDAC3-216ENST00000523088 Q8IZM0 81 aa4.56□□□□□ -1.68
HDAC3-216ENST00000523088 Q8N9L7 120 aa4.56□□□□□ -1.68
HDAC3-216ENST00000523088 KRTAP1-5Q9BYS1 174 aa4.56□□□□□ -1.68
HDAC3-216ENST00000523088 KLK12Q9UKR0 248 aa4.56□□□□□ -1.68
HDAC3-216ENST00000523088 PCLOQ9Y6V0 5065 aa4.56□□□□□ -1.68
HDAC3-216ENST00000523088 RYR1P21817 5038 aa4.55□□□□□ -1.68
HDAC3-216ENST00000523088 IGKV2D-24A0A075B6R9 120 aa4.55□□□□□ -1.68
HDAC3-216ENST00000523088 LINC01556Q5JQF7 62 aa4.55□□□□□ -1.68
HDAC3-216ENST00000523088 LINC00472Q9H8W2 130 aa4.55□□□□□ -1.68
HDAC3-216ENST00000523088 Q6ZRN7 208 aaPredicted RBP4.54□□□□□ -1.68
HDAC3-216ENST00000523088 Q8NBF4 154 aa4.54□□□□□ -1.68
HDAC3-216ENST00000523088 LRP1BQ9NZR2 4599 aa4.53□□□□□ -1.68
HDAC3-216ENST00000523088 A0A1B0GU69 56 aa4.53□□□□□ -1.68
HDAC3-216ENST00000523088 LELP1Q5T871 98 aa4.53□□□□□ -1.68
HDAC3-216ENST00000523088 Q8N1X5 172 aa4.53□□□□□ -1.68
HDAC3-216ENST00000523088 WFDC10BQ8IUB3 73 aa4.52□□□□□ -1.69
HDAC3-216ENST00000523088 HSPG2P98160 4391 aa4.51□□□□□ -1.69
HDAC3-216ENST00000523088 A0A087WTM6 91 aa4.51□□□□□ -1.69
HDAC3-216ENST00000523088 KRTAP17-1Q9BYP8 105 aa4.51□□□□□ -1.69
HDAC3-216ENST00000523088 A0A1B0GU33 70 aa4.5□□□□□ -1.69
HDAC3-216ENST00000523088 HRES1P13985 223 aa4.5□□□□□ -1.69
HDAC3-216ENST00000523088 KRTAP10-2P60368 255 aa4.5□□□□□ -1.69
HDAC3-216ENST00000523088 DNAH5Q8TE73 4624 aa4.5□□□□□ -1.69
HDAC3-216ENST00000523088 SPINT4Q6UDR6 99 aa4.49□□□□□ -1.69
HDAC3-216ENST00000523088 IGLV7-43P04211 117 aa4.48□□□□□ -1.69
HDAC3-216ENST00000523088 DSCR10P59022 87 aa4.48□□□□□ -1.69
HDAC3-216ENST00000523088 COX6A2Q02221 97 aa4.48□□□□□ -1.69
HDAC3-216ENST00000523088 APOBP04114 4563 aaKnown RBP4.48□□□□□ -1.69
HDAC3-216ENST00000523088 IGLV5-48A0A075B6I7 105 aa4.47□□□□□ -1.69
HDAC3-216ENST00000523088 KRTAP29-1A8MX34 341 aaPredicted RBP4.47□□□□□ -1.69
HDAC3-216ENST00000523088 TP53AIP1Q9HCN2 124 aa4.47□□□□□ -1.69
HDAC3-216ENST00000523088 ABCA13Q86UQ4 5058 aa4.47□□□□□ -1.69
HDAC3-216ENST00000523088 C14orf177Q52M58 125 aa4.46□□□□□ -1.7
HDAC3-216ENST00000523088 ACYP2P14621 99 aa4.44□□□□□ -1.7
HDAC3-216ENST00000523088 ANGP03950 147 aaKnown RBP4.43□□□□□ -1.7
HDAC3-216ENST00000523088 KRTAP10-1P60331 282 aa4.43□□□□□ -1.7
HDAC3-216ENST00000523088 Q5VSD8 79 aa4.43□□□□□ -1.7
HDAC3-216ENST00000523088 IGLV6-57P01721 117 aa4.42□□□□□ -1.7
HDAC3-216ENST00000523088 KRTAP4-5Q9BYR2 181 aa4.42□□□□□ -1.7
HDAC3-216ENST00000523088 ANAPC11Q9NYG5 84 aa4.42□□□□□ -1.7
HDAC3-216ENST00000523088 DMBT1Q9UGM3 2413 aaPredicted RBP4.41□□□□□ -1.7
HDAC3-216ENST00000523088 K7EQZ3 153 aa4.41□□□□□ -1.7
HDAC3-216ENST00000523088 Q6ZSA8 131 aa4.41□□□□□ -1.7
HDAC3-216ENST00000523088 Q96NJ1 140 aa4.41□□□□□ -1.7
HDAC3-216ENST00000523088 LINC00304Q8N9R0 145 aa4.39□□□□□ -1.71
HDAC3-216ENST00000523088 VPS13BQ7Z7G8 4022 aa4.39□□□□□ -1.71
HDAC3-216ENST00000523088 A0A1B0GUV1 79 aa4.38□□□□□ -1.71
HDAC3-216ENST00000523088 FAM168BA1KXE4 195 aa4.38□□□□□ -1.71
HDAC3-216ENST00000523088 DEFB104AQ8WTQ1 72 aa4.38□□□□□ -1.71
HDAC3-216ENST00000523088 KRTAP11-1Q8IUC1 163 aa4.37□□□□□ -1.71
HDAC3-216ENST00000523088 A0A1W2PNN7 141 aa4.36□□□□□ -1.71
HDAC3-216ENST00000523088 SMR3BP02814 79 aaPredicted RBP4.36□□□□□ -1.71
HDAC3-216ENST00000523088 FLG2Q5D862 2391 aaPredicted RBP4.36□□□□□ -1.71
HDAC3-216ENST00000523088 FAT1Q14517 4588 aa4.36□□□□□ -1.71
HDAC3-216ENST00000523088 DNAH8Q96JB1 4490 aa4.34□□□□□ -1.71
HDAC3-216ENST00000523088 SRRM2Q9UQ35 2752 aaKnown RBP4.34□□□□□ -1.71
HDAC3-216ENST00000523088 Q8N377 158 aa4.34□□□□□ -1.71
HDAC3-216ENST00000523088 MYCBP2O75592 4640 aa4.33□□□□□ -1.72
HDAC3-216ENST00000523088 A0A0G2JQZ4 141 aa4.33□□□□□ -1.72
HDAC3-216ENST00000523088 RPL37AP61513 92 aaKnown RBP4.33□□□□□ -1.72
HDAC3-216ENST00000523088 PRO2289Q9P1D8 64 aa4.33□□□□□ -1.72
HDAC3-216ENST00000523088 PSORS1C2Q9UIG4 136 aa4.33□□□□□ -1.72
HDAC3-216ENST00000523088 IGKV2-24A0A0C4DH68 120 aa4.32□□□□□ -1.72
HDAC3-216ENST00000523088 CLPSL2Q6UWE3 100 aa4.32□□□□□ -1.72
HDAC3-216ENST00000523088 TOMM7Q9P0U1 55 aa4.31□□□□□ -1.72
HDAC3-216ENST00000523088 HERC1Q15751 4861 aa4.3□□□□□ -1.72
HDAC3-216ENST00000523088 WFDC13Q8IUB5 93 aa4.3□□□□□ -1.72
HDAC3-216ENST00000523088 GVQW2A0A096LPI5 108 aaPredicted RBP4.28□□□□□ -1.72
HDAC3-216ENST00000523088 C6orf48Q9UBA6 75 aa4.28□□□□□ -1.72
HDAC3-216ENST00000523088 SPACA4Q8TDM5 124 aa4.27□□□□□ -1.73
HDAC3-216ENST00000523088 KRTAP10-4P60372 401 aaPredicted RBP4.26□□□□□ -1.73
HDAC3-216ENST00000523088 DEFB116Q30KQ4 102 aa4.26□□□□□ -1.73
HDAC3-216ENST00000523088 PCOTHQ58A44 107 aa4.26□□□□□ -1.73
HDAC3-216ENST00000523088 SSBP3-AS1Q7Z2R9 100 aa4.26□□□□□ -1.73
HDAC3-216ENST00000523088 PKHD1L1Q86WI1 4243 aa4.22□□□□□ -1.73
HDAC3-216ENST00000523088 FAT3Q8TDW7 4589 aa4.21□□□□□ -1.74
Retrieved 100 of 20,778 RNA–protein pairs in 83.9 ms