RNA–Protein interactions for RNA: ENST00000504627.1

SQSTM1-209, Transcript of sequestosome 1, humanhuman

TSL 5

Gene SQSTM1, Length 602 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-209ENST00000504627 SEC61BP60468 96 aaKnown RBP10.01□□□□□ -0.81
SQSTM1-209ENST00000504627 LCE2AQ5TA79 106 aaPredicted RBP10.01□□□□□ -0.81
SQSTM1-209ENST00000504627 LINC00472Q9H8W2 130 aa10□□□□□ -0.81
SQSTM1-209ENST00000504627 Q96NJ1 140 aa9.99□□□□□ -0.81
SQSTM1-209ENST00000504627 J3KT08 172 aa9.97□□□□□ -0.81
SQSTM1-209ENST00000504627 CXCL6P80162 114 aa9.97□□□□□ -0.81
SQSTM1-209ENST00000504627 BPY2O14599 106 aa9.96□□□□□ -0.82
SQSTM1-209ENST00000504627 SIGMAR1Q99720 223 aa9.96□□□□□ -0.82
SQSTM1-209ENST00000504627 C1orf195Q5TG92 126 aa9.93□□□□□ -0.82
SQSTM1-209ENST00000504627 XP32Q5T750 250 aa9.92□□□□□ -0.82
SQSTM1-209ENST00000504627 IGKV4-1P06312 121 aa9.91□□□□□ -0.82
SQSTM1-209ENST00000504627 IGKV3D-7A0A0C4DH55 119 aa9.9□□□□□ -0.82
SQSTM1-209ENST00000504627 DEFB116Q30KQ4 102 aa9.9□□□□□ -0.82
SQSTM1-209ENST00000504627 DSCR10P59022 87 aa9.89□□□□□ -0.83
SQSTM1-209ENST00000504627 KRTAP9-2Q9BYQ4 174 aa9.89□□□□□ -0.83
SQSTM1-209ENST00000504627 A8MWP4 228 aa9.88□□□□□ -0.83
SQSTM1-209ENST00000504627 KRTAP4-1Q9BYQ7 146 aa9.88□□□□□ -0.83
SQSTM1-209ENST00000504627 MT-ATP8P03928 68 aa9.87□□□□□ -0.83
SQSTM1-209ENST00000504627 C9orf92A6NGG3 77 aa9.85□□□□□ -0.83
SQSTM1-209ENST00000504627 NDUFB1O75438 58 aa9.85□□□□□ -0.83
SQSTM1-209ENST00000504627 IMUPQ9GZP8 106 aa9.84□□□□□ -0.83
SQSTM1-209ENST00000504627 K7EQZ3 153 aa9.83□□□□□ -0.84
SQSTM1-209ENST00000504627 PRR15Q8IV56 129 aa9.82□□□□□ -0.84
SQSTM1-209ENST00000504627 A0A1B0GVX0 72 aa9.81□□□□□ -0.84
SQSTM1-209ENST00000504627 Q8N9L7 120 aa9.81□□□□□ -0.84
SQSTM1-209ENST00000504627 HIST1H4AP62805 103 aaKnown RBP9.79□□□□□ -0.84
SQSTM1-209ENST00000504627 PCOTHQ58A44 107 aa9.77□□□□□ -0.85
SQSTM1-209ENST00000504627 C8orf87E5RJ46 101 aa9.76□□□□□ -0.85
SQSTM1-209ENST00000504627 IGHV6-1A0A0B4J1U7 121 aa9.75□□□□□ -0.85
SQSTM1-209ENST00000504627 C8orf17Q9NRJ1 99 aa9.73□□□□□ -0.85
SQSTM1-209ENST00000504627 A0A087WVE0 104 aa9.72□□□□□ -0.85
SQSTM1-209ENST00000504627 HCG22E2RYF7 251 aa9.72□□□□□ -0.85
SQSTM1-209ENST00000504627 MMP24-AS1A0A0U1RRL7 71 aa9.71□□□□□ -0.86
SQSTM1-209ENST00000504627 LINC00313P59037 77 aa9.68□□□□□ -0.86
SQSTM1-209ENST00000504627 hDV103S1A0JD37 113 aa9.65□□□□□ -0.86
SQSTM1-209ENST00000504627 CASC2Q6XLA1 102 aa9.65□□□□□ -0.86
SQSTM1-209ENST00000504627 NOTCH2NLQ7Z3S9 236 aa9.65□□□□□ -0.86
SQSTM1-209ENST00000504627 WFDC13Q8IUB5 93 aa9.65□□□□□ -0.86
SQSTM1-209ENST00000504627 TMEM254Q8TBM7 123 aa9.65□□□□□ -0.86
SQSTM1-209ENST00000504627 FAM236AA0A1B0GUQ0 79 aa9.63□□□□□ -0.87
SQSTM1-209ENST00000504627 FAM236BA0A1B0GV22 79 aa9.63□□□□□ -0.87
SQSTM1-209ENST00000504627 RPL37P61927 97 aaKnown RBP9.63□□□□□ -0.87
SQSTM1-209ENST00000504627 LCE2CQ5TA81 110 aa9.63□□□□□ -0.87
SQSTM1-209ENST00000504627 KRTAP16-1A8MUX0 517 aa9.61□□□□□ -0.87
SQSTM1-209ENST00000504627 MRPL34Q9BQ48 92 aaKnown RBP9.61□□□□□ -0.87
SQSTM1-209ENST00000504627 SCGB1A1P11684 91 aa9.59□□□□□ -0.87
SQSTM1-209ENST00000504627 KRTAP19-2Q3LHN2 52 aa9.59□□□□□ -0.87
SQSTM1-209ENST00000504627 KRTAP9-6A0A140TA67 174 aa9.58□□□□□ -0.88
SQSTM1-209ENST00000504627 MT1HP80294 61 aa9.55□□□□□ -0.88
SQSTM1-209ENST00000504627 Q8N9P0 234 aaPredicted RBP9.55□□□□□ -0.88
SQSTM1-209ENST00000504627 ATOX1O00244 68 aa9.54□□□□□ -0.88
SQSTM1-209ENST00000504627 C20orf166-AS1Q96NR2 134 aa9.53□□□□□ -0.88
SQSTM1-209ENST00000504627 LCE2DQ5TA82 110 aaPredicted RBP9.52□□□□□ -0.89
SQSTM1-209ENST00000504627 COX6B2Q6YFQ2 88 aa9.52□□□□□ -0.89
SQSTM1-209ENST00000504627 A8MUU9 505 aa9.5□□□□□ -0.89
SQSTM1-209ENST00000504627 SMIM20Q8N5G0 67 aa9.5□□□□□ -0.89
SQSTM1-209ENST00000504627 NDUFS5O43920 106 aa9.49□□□□□ -0.89
SQSTM1-209ENST00000504627 Q75L30 129 aa9.49□□□□□ -0.89
SQSTM1-209ENST00000504627 TP53AIP1Q9HCN2 124 aa9.49□□□□□ -0.89
SQSTM1-209ENST00000504627 ATP11AUNQ6ZP68 121 aa9.48□□□□□ -0.89
SQSTM1-209ENST00000504627 OCR1Q9BZK8 76 aa9.48□□□□□ -0.89
SQSTM1-209ENST00000504627 M0R2T5 61 aa9.46□□□□□ -0.9
SQSTM1-209ENST00000504627 UQCRQO14949 82 aa9.44□□□□□ -0.9
SQSTM1-209ENST00000504627 TRAV7A0A075B6U4 112 aa9.43□□□□□ -0.9
SQSTM1-209ENST00000504627 FSIP2Q5CZC0 6907 aa9.41□□□□□ -0.9
SQSTM1-209ENST00000504627 SERP2Q8N6R1 65 aa9.39□□□□□ -0.91
SQSTM1-209ENST00000504627 KRTAP10-6P60371 365 aaPredicted RBP9.38□□□□□ -0.91
SQSTM1-209ENST00000504627 ZCCHC13Q8WW36 166 aaKnown RBP9.38□□□□□ -0.91
SQSTM1-209ENST00000504627 ANAPC13Q9BS18 74 aa9.38□□□□□ -0.91
SQSTM1-209ENST00000504627 TRAV22A0A0B4J277 110 aa9.37□□□□□ -0.91
SQSTM1-209ENST00000504627 LORP23490 312 aaPredicted RBP9.37□□□□□ -0.91
SQSTM1-209ENST00000504627 CRCT1Q9UGL9 99 aa9.34□□□□□ -0.91
SQSTM1-209ENST00000504627 FLGP20930 4061 aaPredicted RBP9.34□□□□□ -0.91
SQSTM1-209ENST00000504627 C5orf47Q569G3 176 aa9.33□□□□□ -0.92
SQSTM1-209ENST00000504627 H0Y9P7 68 aa9.32□□□□□ -0.92
SQSTM1-209ENST00000504627 Q5W150 140 aa9.32□□□□□ -0.92
SQSTM1-209ENST00000504627 COX7CP15954 63 aa9.31□□□□□ -0.92
SQSTM1-209ENST00000504627 MP68P56378 58 aa9.31□□□□□ -0.92
SQSTM1-209ENST00000504627 H3BPC8 53 aa9.29□□□□□ -0.92
SQSTM1-209ENST00000504627 LOC101927531A0A1B0GV80 90 aa9.24□□□□□ -0.93
SQSTM1-209ENST00000504627 IGKV2-30P06310 120 aa9.21□□□□□ -0.94
SQSTM1-209ENST00000504627 LINC00208Q96KT6 92 aa9.21□□□□□ -0.94
SQSTM1-209ENST00000504627 C7orf65Q6ZTY9 151 aa9.2□□□□□ -0.94
SQSTM1-209ENST00000504627 C20orf197Q8N268 126 aa9.2□□□□□ -0.94
SQSTM1-209ENST00000504627 C1orf64Q8NEQ6 169 aa9.2□□□□□ -0.94
SQSTM1-209ENST00000504627 KLKP1Q107X0 134 aa9.18□□□□□ -0.94
SQSTM1-209ENST00000504627 IGKV2D-30A0A075B6S6 120 aa9.16□□□□□ -0.94
SQSTM1-209ENST00000504627 CCDC179H3BU77 68 aa9.14□□□□□ -0.95
SQSTM1-209ENST00000504627 CYP4F30PQ9H0H9 118 aa9.14□□□□□ -0.95
SQSTM1-209ENST00000504627 SNURFQ9Y675 71 aa9.14□□□□□ -0.95
SQSTM1-209ENST00000504627 PCP4P48539 62 aa9.13□□□□□ -0.95
SQSTM1-209ENST00000504627 SPINK7P58062 85 aa9.13□□□□□ -0.95
SQSTM1-209ENST00000504627 FAM236DA0A1B0GTK5 79 aa9.11□□□□□ -0.95
SQSTM1-209ENST00000504627 FAM236CP0DP71 79 aa9.11□□□□□ -0.95
SQSTM1-209ENST00000504627 NDUFC1O43677 76 aa9.08□□□□□ -0.96
SQSTM1-209ENST00000504627 RBM12B-AS1Q9P1G2 102 aa9.06□□□□□ -0.96
SQSTM1-209ENST00000504627 CYSTM1Q9H1C7 97 aa9.02□□□□□ -0.97
SQSTM1-209ENST00000504627 H7BZZ5 65 aa9□□□□□ -0.97
SQSTM1-209ENST00000504627 HRES1P13985 223 aa9□□□□□ -0.97
SQSTM1-209ENST00000504627 KRTAP9-8Q9BYQ0 159 aa9□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 86.4 ms