RNA–Protein interactions for RNA: ENST00000491659.5

USP39-217, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 3

Gene USP39, Length 648 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-217ENST00000491659 C21orf62-AS1Q17RA5 79 aa7.97□□□□□ -1.13
USP39-217ENST00000491659 RBM3P98179 157 aaKnown RBP7.96□□□□□ -1.14
USP39-217ENST00000491659 PDE6GP18545 87 aa7.95□□□□□ -1.14
USP39-217ENST00000491659 C14orf132Q9NPU4 83 aa7.95□□□□□ -1.14
USP39-217ENST00000491659 MT1HP80294 61 aa7.94□□□□□ -1.14
USP39-217ENST00000491659 COX6B2Q6YFQ2 88 aa7.94□□□□□ -1.14
USP39-217ENST00000491659 CCKP06307 115 aa7.93□□□□□ -1.14
USP39-217ENST00000491659 DSCR8Q96T75 97 aa7.93□□□□□ -1.14
USP39-217ENST00000491659 C20orf166-AS1Q96NR2 134 aa7.92□□□□□ -1.14
USP39-217ENST00000491659 IGKV4-1P06312 121 aa7.91□□□□□ -1.14
USP39-217ENST00000491659 DSCR10P59022 87 aa7.91□□□□□ -1.14
USP39-217ENST00000491659 LOC110117498A0A087WWA1 95 aa7.9□□□□□ -1.14
USP39-217ENST00000491659 A8MUU9 505 aa7.9□□□□□ -1.14
USP39-217ENST00000491659 SCGB1A1P11684 91 aa7.9□□□□□ -1.14
USP39-217ENST00000491659 LINC00643Q86TS7 51 aa7.88□□□□□ -1.15
USP39-217ENST00000491659 MT-ATP8P03928 68 aa7.87□□□□□ -1.15
USP39-217ENST00000491659 LINC00313P59037 77 aa7.86□□□□□ -1.15
USP39-217ENST00000491659 M0R2T5 61 aa7.85□□□□□ -1.15
USP39-217ENST00000491659 DEFB116Q30KQ4 102 aa7.85□□□□□ -1.15
USP39-217ENST00000491659 Q6ZQT0 140 aa7.85□□□□□ -1.15
USP39-217ENST00000491659 LINC00472Q9H8W2 130 aa7.85□□□□□ -1.15
USP39-217ENST00000491659 UBL5Q9BZL1 73 aa7.82□□□□□ -1.16
USP39-217ENST00000491659 IGHV6-1A0A0B4J1U7 121 aa7.81□□□□□ -1.16
USP39-217ENST00000491659 PCP4P48539 62 aa7.81□□□□□ -1.16
USP39-217ENST00000491659 LCE2DQ5TA82 110 aaPredicted RBP7.81□□□□□ -1.16
USP39-217ENST00000491659 IMUPQ9GZP8 106 aa7.81□□□□□ -1.16
USP39-217ENST00000491659 LINC00846Q9NV44 126 aa7.81□□□□□ -1.16
USP39-217ENST00000491659 KRTAP16-1A8MUX0 517 aa7.8□□□□□ -1.16
USP39-217ENST00000491659 A0A1B0GW54 56 aa7.78□□□□□ -1.16
USP39-217ENST00000491659 KRTAP10-6P60371 365 aaPredicted RBP7.78□□□□□ -1.16
USP39-217ENST00000491659 ATP5EP2Q5VTU8 51 aa7.78□□□□□ -1.16
USP39-217ENST00000491659 NOTCH2NLQ7Z3S9 236 aa7.78□□□□□ -1.16
USP39-217ENST00000491659 A0A1B0GVX0 72 aa7.77□□□□□ -1.17
USP39-217ENST00000491659 C8orf87E5RJ46 101 aa7.77□□□□□ -1.17
USP39-217ENST00000491659 LORP23490 312 aaPredicted RBP7.77□□□□□ -1.17
USP39-217ENST00000491659 KRTAP9-6A0A140TA67 174 aa7.76□□□□□ -1.17
USP39-217ENST00000491659 J3KT08 172 aa7.76□□□□□ -1.17
USP39-217ENST00000491659 FLGP20930 4061 aaPredicted RBP7.74□□□□□ -1.17
USP39-217ENST00000491659 IGKV3D-7A0A0C4DH55 119 aa7.72□□□□□ -1.17
USP39-217ENST00000491659 NDUFB1O75438 58 aa7.71□□□□□ -1.18
USP39-217ENST00000491659 NREPQ16612 68 aa7.7□□□□□ -1.18
USP39-217ENST00000491659 Q6ZVQ6 151 aa7.7□□□□□ -1.18
USP39-217ENST00000491659 FAM236DA0A1B0GTK5 79 aa7.67□□□□□ -1.18
USP39-217ENST00000491659 FAM236CP0DP71 79 aa7.67□□□□□ -1.18
USP39-217ENST00000491659 CXCL6P80162 114 aa7.67□□□□□ -1.18
USP39-217ENST00000491659 HIST1H4AP62805 103 aaKnown RBP7.66□□□□□ -1.18
USP39-217ENST00000491659 A8MWP4 228 aa7.65□□□□□ -1.18
USP39-217ENST00000491659 ANAPC13Q9BS18 74 aa7.65□□□□□ -1.18
USP39-217ENST00000491659 RBM12B-AS1Q9P1G2 102 aa7.65□□□□□ -1.18
USP39-217ENST00000491659 ZCCHC13Q8WW36 166 aaKnown RBP7.63□□□□□ -1.19
USP39-217ENST00000491659 FAM236AA0A1B0GUQ0 79 aa7.62□□□□□ -1.19
USP39-217ENST00000491659 FAM236BA0A1B0GV22 79 aa7.62□□□□□ -1.19
USP39-217ENST00000491659 BPY2O14599 106 aa7.62□□□□□ -1.19
USP39-217ENST00000491659 HRES1P13985 223 aa7.62□□□□□ -1.19
USP39-217ENST00000491659 C8orf17Q9NRJ1 99 aa7.62□□□□□ -1.19
USP39-217ENST00000491659 ATOX1O00244 68 aa7.6□□□□□ -1.19
USP39-217ENST00000491659 CRCT1Q9UGL9 99 aa7.6□□□□□ -1.19
USP39-217ENST00000491659 Q8N9P0 234 aaPredicted RBP7.59□□□□□ -1.19
USP39-217ENST00000491659 MPLKIPQ8TAP9 179 aa7.59□□□□□ -1.19
USP39-217ENST00000491659 PRR15Q8IV56 129 aa7.57□□□□□ -1.2
USP39-217ENST00000491659 A0A087WVE0 104 aa7.55□□□□□ -1.2
USP39-217ENST00000491659 SPINK7P58062 85 aa7.54□□□□□ -1.2
USP39-217ENST00000491659 MMP24-AS1A0A0U1RRL7 71 aa7.52□□□□□ -1.21
USP39-217ENST00000491659 SMIM20Q8N5G0 67 aa7.52□□□□□ -1.21
USP39-217ENST00000491659 TMEM254Q8TBM7 123 aa7.52□□□□□ -1.21
USP39-217ENST00000491659 MRPL34Q9BQ48 92 aaKnown RBP7.51□□□□□ -1.21
USP39-217ENST00000491659 K7EQZ3 153 aa7.5□□□□□ -1.21
USP39-217ENST00000491659 KRTAP9-8Q9BYQ0 159 aa7.49□□□□□ -1.21
USP39-217ENST00000491659 hDV103S1A0JD37 113 aa7.48□□□□□ -1.21
USP39-217ENST00000491659 SERP2Q8N6R1 65 aa7.48□□□□□ -1.21
USP39-217ENST00000491659 UQCRQO14949 82 aa7.47□□□□□ -1.21
USP39-217ENST00000491659 COX7CP15954 63 aa7.47□□□□□ -1.21
USP39-217ENST00000491659 NDUFS5O43920 106 aa7.46□□□□□ -1.22
USP39-217ENST00000491659 WFDC13Q8IUB5 93 aa7.46□□□□□ -1.22
USP39-217ENST00000491659 Q8N9L7 120 aa7.45□□□□□ -1.22
USP39-217ENST00000491659 TRAV7A0A075B6U4 112 aa7.44□□□□□ -1.22
USP39-217ENST00000491659 FSIP2Q5CZC0 6907 aa7.43□□□□□ -1.22
USP39-217ENST00000491659 CCDC179H3BU77 68 aa7.43□□□□□ -1.22
USP39-217ENST00000491659 MT2AP02795 61 aa7.41□□□□□ -1.22
USP39-217ENST00000491659 SVIPQ8NHG7 77 aa7.41□□□□□ -1.22
USP39-217ENST00000491659 HCG22E2RYF7 251 aa7.39□□□□□ -1.23
USP39-217ENST00000491659 CASC2Q6XLA1 102 aa7.38□□□□□ -1.23
USP39-217ENST00000491659 MT1FP04733 61 aa7.35□□□□□ -1.23
USP39-217ENST00000491659 IGKV2D-30A0A075B6S6 120 aa7.34□□□□□ -1.23
USP39-217ENST00000491659 IGKV2-30P06310 120 aa7.34□□□□□ -1.23
USP39-217ENST00000491659 KRTAP10-10P60014 251 aa7.34□□□□□ -1.23
USP39-217ENST00000491659 C7orf65Q6ZTY9 151 aa7.33□□□□□ -1.24
USP39-217ENST00000491659 Q5W150 140 aa7.31□□□□□ -1.24
USP39-217ENST00000491659 OCR1Q9BZK8 76 aa7.31□□□□□ -1.24
USP39-217ENST00000491659 C20orf197Q8N268 126 aa7.29□□□□□ -1.24
USP39-217ENST00000491659 H1FX-AS1Q4G0G2 97 aa7.28□□□□□ -1.24
USP39-217ENST00000491659 C5orf47Q569G3 176 aa7.27□□□□□ -1.25
USP39-217ENST00000491659 KRTAP9-3Q9BYQ3 159 aa7.26□□□□□ -1.25
USP39-217ENST00000491659 NDUFC1O43677 76 aa7.25□□□□□ -1.25
USP39-217ENST00000491659 KLKP1Q107X0 134 aa7.24□□□□□ -1.25
USP39-217ENST00000491659 MP68P56378 58 aa7.23□□□□□ -1.25
USP39-217ENST00000491659 TP53AIP1Q9HCN2 124 aa7.22□□□□□ -1.25
USP39-217ENST00000491659 LCE2BO14633 110 aa7.21□□□□□ -1.26
USP39-217ENST00000491659 TMEM258P61165 79 aa7.21□□□□□ -1.26
USP39-217ENST00000491659 USH2AO75445 5202 aa7.21□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 66.7 ms