RNA–Protein interactions for RNA: ENST00000487698.5

SF3B1-211, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 1 (best) BASIC

Gene SF3B1, Length 2,127 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-211ENST00000487698 A0A1B0GVX0 72 aa5.39□□□□□ -1.55
SF3B1-211ENST00000487698 MMP24-AS1A0A0U1RRL7 71 aa5.39□□□□□ -1.55
SF3B1-211ENST00000487698 COX7CP15954 63 aa5.39□□□□□ -1.55
SF3B1-211ENST00000487698 SMIM20Q8N5G0 67 aa5.39□□□□□ -1.55
SF3B1-211ENST00000487698 OCR1Q9BZK8 76 aa5.38□□□□□ -1.55
SF3B1-211ENST00000487698 TNXBP22105 4242 aa5.38□□□□□ -1.55
SF3B1-211ENST00000487698 TRAV7A0A075B6U4 112 aa5.38□□□□□ -1.55
SF3B1-211ENST00000487698 CCDC179H3BU77 68 aa5.38□□□□□ -1.55
SF3B1-211ENST00000487698 WFDC13Q8IUB5 93 aa5.38□□□□□ -1.55
SF3B1-211ENST00000487698 LRP1Q07954 4544 aaKnown RBP5.37□□□□□ -1.55
SF3B1-211ENST00000487698 UQCRQO14949 82 aa5.37□□□□□ -1.55
SF3B1-211ENST00000487698 CASC2Q6XLA1 102 aa5.37□□□□□ -1.55
SF3B1-211ENST00000487698 IGHV6-1A0A0B4J1U7 121 aa5.36□□□□□ -1.55
SF3B1-211ENST00000487698 C8orf17Q9NRJ1 99 aa5.36□□□□□ -1.55
SF3B1-211ENST00000487698 FLG2Q5D862 2391 aaPredicted RBP5.36□□□□□ -1.55
SF3B1-211ENST00000487698 KRTAP10-8P60410 259 aa5.35□□□□□ -1.55
SF3B1-211ENST00000487698 FAT3Q8TDW7 4589 aa5.35□□□□□ -1.55
SF3B1-211ENST00000487698 NOTCH2NLQ7Z3S9 236 aa5.35□□□□□ -1.55
SF3B1-211ENST00000487698 hDV103S1A0JD37 113 aa5.34□□□□□ -1.55
SF3B1-211ENST00000487698 C8orf87E5RJ46 101 aa5.32□□□□□ -1.56
SF3B1-211ENST00000487698 TMEM254Q8TBM7 123 aa5.32□□□□□ -1.56
SF3B1-211ENST00000487698 MYCBP2O75592 4640 aa5.31□□□□□ -1.56
SF3B1-211ENST00000487698 LOC100996750A0A140TA64 210 aa5.3□□□□□ -1.56
SF3B1-211ENST00000487698 KRTAP4-6Q9BYQ5 205 aa5.3□□□□□ -1.56
SF3B1-211ENST00000487698 MRPL34Q9BQ48 92 aaKnown RBP5.29□□□□□ -1.56
SF3B1-211ENST00000487698 BIRC6Q9NR09 4857 aa5.29□□□□□ -1.56
SF3B1-211ENST00000487698 MT1HL1P0DM35 61 aa5.29□□□□□ -1.56
SF3B1-211ENST00000487698 C20orf197Q8N268 126 aa5.29□□□□□ -1.56
SF3B1-211ENST00000487698 CYSTM1Q9H1C7 97 aa5.29□□□□□ -1.56
SF3B1-211ENST00000487698 LINC00313P59037 77 aa5.28□□□□□ -1.56
SF3B1-211ENST00000487698 KRTAP4-5Q9BYR2 181 aa5.28□□□□□ -1.56
SF3B1-211ENST00000487698 KLKP1Q107X0 134 aa5.27□□□□□ -1.57
SF3B1-211ENST00000487698 KRTAP16-1A8MUX0 517 aa5.27□□□□□ -1.57
SF3B1-211ENST00000487698 DMBT1Q9UGM3 2413 aaPredicted RBP5.27□□□□□ -1.57
SF3B1-211ENST00000487698 A0A0U1RQV1 116 aa5.26□□□□□ -1.57
SF3B1-211ENST00000487698 C5orf47Q569G3 176 aa5.26□□□□□ -1.57
SF3B1-211ENST00000487698 TP53AIP1Q9HCN2 124 aa5.26□□□□□ -1.57
SF3B1-211ENST00000487698 RETNLBQ9BQ08 111 aa5.25□□□□□ -1.57
SF3B1-211ENST00000487698 Q8N9P0 234 aaPredicted RBP5.24□□□□□ -1.57
SF3B1-211ENST00000487698 SNURFQ9Y675 71 aa5.24□□□□□ -1.57
SF3B1-211ENST00000487698 HERC2O95714 4834 aa5.24□□□□□ -1.57
SF3B1-211ENST00000487698 OXTP01178 125 aa5.24□□□□□ -1.57
SF3B1-211ENST00000487698 ABCA13Q86UQ4 5058 aa5.23□□□□□ -1.57
SF3B1-211ENST00000487698 NDUFS5O43920 106 aa5.23□□□□□ -1.57
SF3B1-211ENST00000487698 ZCCHC13Q8WW36 166 aaKnown RBP5.23□□□□□ -1.57
SF3B1-211ENST00000487698 TRAV22A0A0B4J277 110 aa5.22□□□□□ -1.57
SF3B1-211ENST00000487698 H0Y9P7 68 aa5.21□□□□□ -1.57
SF3B1-211ENST00000487698 MP68P56378 58 aa5.21□□□□□ -1.58
SF3B1-211ENST00000487698 KRTAP13-3Q3SY46 172 aa5.21□□□□□ -1.58
SF3B1-211ENST00000487698 H3BPC8 53 aa5.2□□□□□ -1.58
SF3B1-211ENST00000487698 H7BZZ5 65 aa5.2□□□□□ -1.58
SF3B1-211ENST00000487698 NDUFC1O43677 76 aa5.19□□□□□ -1.58
SF3B1-211ENST00000487698 FP248Q71RG6 208 aaPredicted RBP5.19□□□□□ -1.58
SF3B1-211ENST00000487698 Q5W150 140 aa5.18□□□□□ -1.58
SF3B1-211ENST00000487698 LINC00208Q96KT6 92 aa5.18□□□□□ -1.58
SF3B1-211ENST00000487698 LCE2AQ5TA79 106 aaPredicted RBP5.18□□□□□ -1.58
SF3B1-211ENST00000487698 TMEM258P61165 79 aa5.17□□□□□ -1.58
SF3B1-211ENST00000487698 C9orf92A6NGG3 77 aa5.17□□□□□ -1.58
SF3B1-211ENST00000487698 C1orf64Q8NEQ6 169 aa5.16□□□□□ -1.58
SF3B1-211ENST00000487698 C20orf166-AS1Q96NR2 134 aa5.15□□□□□ -1.58
SF3B1-211ENST00000487698 A8MUU9 505 aa5.15□□□□□ -1.59
SF3B1-211ENST00000487698 IGLV7-46A0A075B6I9 117 aa5.13□□□□□ -1.59
SF3B1-211ENST00000487698 LOC101927531A0A1B0GV80 90 aa5.12□□□□□ -1.59
SF3B1-211ENST00000487698 FAM236DA0A1B0GTK5 79 aa5.11□□□□□ -1.59
SF3B1-211ENST00000487698 FAM236CP0DP71 79 aa5.11□□□□□ -1.59
SF3B1-211ENST00000487698 Q75L30 129 aa5.1□□□□□ -1.59
SF3B1-211ENST00000487698 ATP5EP56381 51 aaPredicted RBP5.09□□□□□ -1.59
SF3B1-211ENST00000487698 CYP4F30PQ9H0H9 118 aa5.09□□□□□ -1.59
SF3B1-211ENST00000487698 IGKV2-30P06310 120 aa5.08□□□□□ -1.6
SF3B1-211ENST00000487698 PRR4Q16378 134 aa5.07□□□□□ -1.6
SF3B1-211ENST00000487698 XP32Q5T750 250 aa5.07□□□□□ -1.6
SF3B1-211ENST00000487698 SPANXA2-OT1Q8N9U9 137 aa5.07□□□□□ -1.6
SF3B1-211ENST00000487698 J3QL48 77 aa5.06□□□□□ -1.6
SF3B1-211ENST00000487698 PCOTHQ58A44 107 aa5.06□□□□□ -1.6
SF3B1-211ENST00000487698 PCLOQ9Y6V0 5065 aa5.06□□□□□ -1.6
SF3B1-211ENST00000487698 TPRXLQ17RH7 258 aa5.05□□□□□ -1.6
SF3B1-211ENST00000487698 RPL37P61927 97 aaKnown RBP5.05□□□□□ -1.6
SF3B1-211ENST00000487698 IGKV2D-30A0A075B6S6 120 aa5.03□□□□□ -1.6
SF3B1-211ENST00000487698 C7orf65Q6ZTY9 151 aa5.02□□□□□ -1.61
SF3B1-211ENST00000487698 RPS28P62857 69 aaKnown RBP5.01□□□□□ -1.61
SF3B1-211ENST00000487698 HRES1P13985 223 aa5□□□□□ -1.61
SF3B1-211ENST00000487698 SERP1Q9Y6X1 66 aa5□□□□□ -1.61
SF3B1-211ENST00000487698 ATP11AUNQ6ZP68 121 aa4.99□□□□□ -1.61
SF3B1-211ENST00000487698 LPAP08519 4548 aa4.98□□□□□ -1.61
SF3B1-211ENST00000487698 LRP2P98164 4655 aa4.97□□□□□ -1.61
SF3B1-211ENST00000487698 SPINK7P58062 85 aa4.96□□□□□ -1.62
SF3B1-211ENST00000487698 DMAC1Q96GE9 116 aa4.94□□□□□ -1.62
SF3B1-211ENST00000487698 COA5Q86WW8 74 aa4.91□□□□□ -1.62
SF3B1-211ENST00000487698 HERC1Q15751 4861 aa4.9□□□□□ -1.62
SF3B1-211ENST00000487698 C4orf26Q17RF5 130 aa4.9□□□□□ -1.62
SF3B1-211ENST00000487698 ACYP2P14621 99 aa4.88□□□□□ -1.63
SF3B1-211ENST00000487698 HMCN2Q8NDA2 5059 aa4.87□□□□□ -1.63
SF3B1-211ENST00000487698 A8MUN3 132 aa4.87□□□□□ -1.63
SF3B1-211ENST00000487698 KRTAP3-1Q9BYR8 98 aa4.87□□□□□ -1.63
SF3B1-211ENST00000487698 SMIM26A0A096LP01 95 aa4.87□□□□□ -1.63
SF3B1-211ENST00000487698 SEC61BP60468 96 aaKnown RBP4.85□□□□□ -1.63
SF3B1-211ENST00000487698 COX6B2Q6YFQ2 88 aa4.85□□□□□ -1.63
SF3B1-211ENST00000487698 MUC17Q685J3 4493 aa4.84□□□□□ -1.63
SF3B1-211ENST00000487698 LCE2CQ5TA81 110 aa4.83□□□□□ -1.64
SF3B1-211ENST00000487698 MPLKIPQ8TAP9 179 aa4.82□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 133 ms