RNA–Protein interactions for RNA: ENST00000470531.5

CHD3-208, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 2

Gene CHD3, Length 3,744 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-208ENST00000470531 A0A087X002 238 aa6.54□□□□□ -1.36
CHD3-208ENST00000470531 NOTCH2NLQ7Z3S9 236 aa6.54□□□□□ -1.36
CHD3-208ENST00000470531 A0A1B0GW54 56 aa6.54□□□□□ -1.36
CHD3-208ENST00000470531 APLNQ9ULZ1 77 aa6.54□□□□□ -1.36
CHD3-208ENST00000470531 MRPL34Q9BQ48 92 aaKnown RBP6.54□□□□□ -1.36
CHD3-208ENST00000470531 IGLV5-37A0A075B6J1 123 aa6.53□□□□□ -1.36
CHD3-208ENST00000470531 A0A087WTM6 91 aa6.52□□□□□ -1.37
CHD3-208ENST00000470531 DNAH10Q8IVF4 4471 aa6.51□□□□□ -1.37
CHD3-208ENST00000470531 MMP24-AS1A0A0U1RRL7 71 aa6.51□□□□□ -1.37
CHD3-208ENST00000470531 A0A1B0GVX0 72 aa6.51□□□□□ -1.37
CHD3-208ENST00000470531 LYSTQ99698 3801 aa6.5□□□□□ -1.37
CHD3-208ENST00000470531 LINC00472Q9H8W2 130 aa6.5□□□□□ -1.37
CHD3-208ENST00000470531 SMR3BP02814 79 aaPredicted RBP6.48□□□□□ -1.37
CHD3-208ENST00000470531 A0A1B0GU69 56 aa6.48□□□□□ -1.37
CHD3-208ENST00000470531 ZNF861PO60384 105 aa6.48□□□□□ -1.37
CHD3-208ENST00000470531 TP53AIP1Q9HCN2 124 aa6.47□□□□□ -1.37
CHD3-208ENST00000470531 KRTAP29-1A8MX34 341 aaPredicted RBP6.47□□□□□ -1.37
CHD3-208ENST00000470531 SPANXA2-OT1Q8N9U9 137 aa6.47□□□□□ -1.37
CHD3-208ENST00000470531 LINC01558Q9Y6Z2 57 aa6.45□□□□□ -1.38
CHD3-208ENST00000470531 Q8N1X5 172 aa6.45□□□□□ -1.38
CHD3-208ENST00000470531 Q96NJ1 140 aa6.44□□□□□ -1.38
CHD3-208ENST00000470531 ACYP2P14621 99 aa6.43□□□□□ -1.38
CHD3-208ENST00000470531 C9orf92A6NGG3 77 aa6.42□□□□□ -1.38
CHD3-208ENST00000470531 H3BPC8 53 aa6.42□□□□□ -1.38
CHD3-208ENST00000470531 FAM229AH3BQW9 127 aa6.42□□□□□ -1.38
CHD3-208ENST00000470531 HRES1P13985 223 aa6.42□□□□□ -1.38
CHD3-208ENST00000470531 MIR22HGQ0VDD5 57 aa6.41□□□□□ -1.38
CHD3-208ENST00000470531 PLA2G1BP04054 148 aaKnown RBP6.41□□□□□ -1.38
CHD3-208ENST00000470531 Q5W150 140 aa6.4□□□□□ -1.39
CHD3-208ENST00000470531 MEGF8Q7Z7M0 2845 aa6.39□□□□□ -1.39
CHD3-208ENST00000470531 IGLV7-46A0A075B6I9 117 aa6.39□□□□□ -1.39
CHD3-208ENST00000470531 IGLV7-43P04211 117 aa6.39□□□□□ -1.39
CHD3-208ENST00000470531 SPINT4Q6UDR6 99 aa6.38□□□□□ -1.39
CHD3-208ENST00000470531 WWC2-AS2Q96NR7 200 aa6.37□□□□□ -1.39
CHD3-208ENST00000470531 TYMSOSQ8TAI1 123 aa6.37□□□□□ -1.39
CHD3-208ENST00000470531 UQCR11O14957 56 aa6.36□□□□□ -1.39
CHD3-208ENST00000470531 Q6ZR54 194 aa6.35□□□□□ -1.39
CHD3-208ENST00000470531 KRTAP10-2P60368 255 aa6.34□□□□□ -1.4
CHD3-208ENST00000470531 CRIPTQ9P021 101 aa6.33□□□□□ -1.4
CHD3-208ENST00000470531 SSBP3-AS1Q7Z2R9 100 aa6.33□□□□□ -1.4
CHD3-208ENST00000470531 DNAH9Q9NYC9 4486 aa6.32□□□□□ -1.4
CHD3-208ENST00000470531 SPRR1BP22528 89 aa6.31□□□□□ -1.4
CHD3-208ENST00000470531 ROMO1P60602 79 aa6.29□□□□□ -1.4
CHD3-208ENST00000470531 DNAH1Q9P2D7 4330 aa6.28□□□□□ -1.4
CHD3-208ENST00000470531 HUWE1Q7Z6Z7 4374 aaKnown RBP6.25□□□□□ -1.41
CHD3-208ENST00000470531 Q6ZRN7 208 aaPredicted RBP6.25□□□□□ -1.41
CHD3-208ENST00000470531 DNAH7Q8WXX0 4024 aa6.24□□□□□ -1.41
CHD3-208ENST00000470531 CMYA5Q8N3K9 4069 aa6.23□□□□□ -1.41
CHD3-208ENST00000470531 KRTAP16-1A8MUX0 517 aa6.22□□□□□ -1.41
CHD3-208ENST00000470531 K7ERS5 55 aa6.22□□□□□ -1.41
CHD3-208ENST00000470531 PLAC8Q9NZF1 115 aa6.22□□□□□ -1.41
CHD3-208ENST00000470531 FRAS1Q86XX4 4008 aa6.22□□□□□ -1.41
CHD3-208ENST00000470531 KRTAP10-1P60331 282 aa6.22□□□□□ -1.41
CHD3-208ENST00000470531 KRTAP13-1Q8IUC0 172 aa6.2□□□□□ -1.42
CHD3-208ENST00000470531 A0A0D9SG42 100 aa6.19□□□□□ -1.42
CHD3-208ENST00000470531 ASB16-AS1Q495Z4 193 aa6.19□□□□□ -1.42
CHD3-208ENST00000470531 NDUFAF8A1L188 74 aa6.19□□□□□ -1.42
CHD3-208ENST00000470531 LINC00304Q8N9R0 145 aa6.17□□□□□ -1.42
CHD3-208ENST00000470531 LINC00483Q53H64 154 aa6.14□□□□□ -1.43
CHD3-208ENST00000470531 SPATA8Q6RVD6 105 aa6.14□□□□□ -1.43
CHD3-208ENST00000470531 KRTAP25-1Q3LHN0 102 aa6.13□□□□□ -1.43
CHD3-208ENST00000470531 KRTAP13-2Q52LG2 175 aa6.13□□□□□ -1.43
CHD3-208ENST00000470531 PLECQ15149 4684 aaKnown RBP6.12□□□□□ -1.43
CHD3-208ENST00000470531 DNAH8Q96JB1 4490 aa6.08□□□□□ -1.44
CHD3-208ENST00000470531 DNAH3Q8TD57 4116 aa6.07□□□□□ -1.44
CHD3-208ENST00000470531 LUZP6Q538Z0 58 aa6.07□□□□□ -1.44
CHD3-208ENST00000470531 DMAC1Q96GE9 116 aa6.07□□□□□ -1.44
CHD3-208ENST00000470531 A8MUU9 505 aa6.05□□□□□ -1.44
CHD3-208ENST00000470531 KRTAP13-3Q3SY46 172 aa6.02□□□□□ -1.45
CHD3-208ENST00000470531 A0A1B0GU33 70 aa6.01□□□□□ -1.45
CHD3-208ENST00000470531 KMT2AQ03164 3969 aa6□□□□□ -1.45
CHD3-208ENST00000470531 C20orf166-AS1Q96NR2 134 aa5.99□□□□□ -1.45
CHD3-208ENST00000470531 DNAH17Q9UFH2 4485 aa5.98□□□□□ -1.45
CHD3-208ENST00000470531 STARD9Q9P2P6 4700 aa5.98□□□□□ -1.45
CHD3-208ENST00000470531 P0C880 135 aa5.97□□□□□ -1.45
CHD3-208ENST00000470531 HECTD4Q9Y4D8 3996 aa5.96□□□□□ -1.46
CHD3-208ENST00000470531 SEC61BP60468 96 aaKnown RBP5.96□□□□□ -1.46
CHD3-208ENST00000470531 ALMS1Q8TCU4 4167 aa5.94□□□□□ -1.46
CHD3-208ENST00000470531 DNAH6Q9C0G6 4158 aa5.91□□□□□ -1.46
CHD3-208ENST00000470531 DNAH2Q9P225 4427 aa5.9□□□□□ -1.46
CHD3-208ENST00000470531 KRTAP1-4P0C5Y4 121 aa5.88□□□□□ -1.47
CHD3-208ENST00000470531 DNAH11Q96DT5 4516 aa5.87□□□□□ -1.47
CHD3-208ENST00000470531 VPS13DQ5THJ4 4388 aa5.86□□□□□ -1.47
CHD3-208ENST00000470531 Q6ZSA8 131 aa5.83□□□□□ -1.48
CHD3-208ENST00000470531 PRKDCP78527 4128 aaKnown RBP5.82□□□□□ -1.48
CHD3-208ENST00000470531 H1FX-AS1Q4G0G2 97 aa5.81□□□□□ -1.48
CHD3-208ENST00000470531 LRP1BQ9NZR2 4599 aa5.8□□□□□ -1.48
CHD3-208ENST00000470531 DNHD1Q96M86 4753 aa5.8□□□□□ -1.48
CHD3-208ENST00000470531 H0YAA0 97 aa5.78□□□□□ -1.48
CHD3-208ENST00000470531 DYNC2H1Q8NCM8 4307 aaKnown RBP5.78□□□□□ -1.48
CHD3-208ENST00000470531 C10orf95Q9H7T3 257 aa5.75□□□□□ -1.49
CHD3-208ENST00000470531 COX6B2Q6YFQ2 88 aa5.74□□□□□ -1.49
CHD3-208ENST00000470531 DNAH5Q8TE73 4624 aa5.74□□□□□ -1.49
CHD3-208ENST00000470531 Q5VSD8 79 aa5.72□□□□□ -1.49
CHD3-208ENST00000470531 S4R3F8 94 aa5.7□□□□□ -1.5
CHD3-208ENST00000470531 VPS13BQ7Z7G8 4022 aa5.7□□□□□ -1.5
CHD3-208ENST00000470531 RPL37P61927 97 aaKnown RBP5.69□□□□□ -1.5
CHD3-208ENST00000470531 FAT1Q14517 4588 aa5.69□□□□□ -1.5
CHD3-208ENST00000470531 FAT2Q9NYQ8 4349 aa5.67□□□□□ -1.5
CHD3-208ENST00000470531 MYCBP2O75592 4640 aa5.67□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 112.6 ms