RNA–Protein interactions for RNA: ENST00000462815.5

PTPN7-204, Transcript of protein tyrosine phosphatase, non-receptor type 7, human

TSL 2

Gene PTPN7, Length 1,147 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTPN7-204	ENST00000462815	RBM3	P98179	157 aa	Known RBP	5.72	□□□□□ -1.49
PTPN7-204	ENST00000462815	IGFL1	Q6UW32	110 aa		5.72	□□□□□ -1.49
PTPN7-204	ENST00000462815	TRBV7-7	A0A0K0K1E9	115 aa		5.71	□□□□□ -1.5
PTPN7-204	ENST00000462815		Q6JHZ5	121 aa		5.71	□□□□□ -1.5
PTPN7-204	ENST00000462815	ETDB	Q3ZM63	59 aa		5.7	□□□□□ -1.5
PTPN7-204	ENST00000462815	TEN1	Q86WV5	123 aa		5.7	□□□□□ -1.5
PTPN7-204	ENST00000462815	LOC110117498	A0A087WWA1	95 aa		5.69	□□□□□ -1.5
PTPN7-204	ENST00000462815		A0A1W2PNM2	257 aa		5.69	□□□□□ -1.5
PTPN7-204	ENST00000462815	ATP11AUN	Q6ZP68	121 aa		5.68	□□□□□ -1.5
PTPN7-204	ENST00000462815		Q6ZQT0	140 aa		5.68	□□□□□ -1.5
PTPN7-204	ENST00000462815	DSCR8	Q96T75	97 aa		5.68	□□□□□ -1.5
PTPN7-204	ENST00000462815	C14orf132	Q9NPU4	83 aa		5.68	□□□□□ -1.5
PTPN7-204	ENST00000462815	MT2A	P02795	61 aa		5.67	□□□□□ -1.5
PTPN7-204	ENST00000462815	C20orf166-AS1	Q96NR2	134 aa		5.67	□□□□□ -1.5
PTPN7-204	ENST00000462815	LCE2B	O14633	110 aa		5.66	□□□□□ -1.5
PTPN7-204	ENST00000462815	PDE6G	P18545	87 aa		5.66	□□□□□ -1.5
PTPN7-204	ENST00000462815	MACF1	Q9UPN3	7388 aa	Known RBP	5.65	□□□□□ -1.5
PTPN7-204	ENST00000462815		A8MUU9	505 aa		5.65	□□□□□ -1.5
PTPN7-204	ENST00000462815	CCK	P06307	115 aa		5.65	□□□□□ -1.5
PTPN7-204	ENST00000462815	MT1F	P04733	61 aa		5.64	□□□□□ -1.51
PTPN7-204	ENST00000462815	KRTAP19-1	Q8IUB9	90 aa		5.64	□□□□□ -1.51
PTPN7-204	ENST00000462815	SYNE2	Q8WXH0	6885 aa	Known RBP	5.62	□□□□□ -1.51
PTPN7-204	ENST00000462815		Q96NJ1	140 aa		5.62	□□□□□ -1.51
PTPN7-204	ENST00000462815	KRTAP9-3	Q9BYQ3	159 aa		5.62	□□□□□ -1.51
PTPN7-204	ENST00000462815	KRTAP16-1	A8MUX0	517 aa		5.61	□□□□□ -1.51
PTPN7-204	ENST00000462815	C21orf62-AS1	Q17RA5	79 aa		5.61	□□□□□ -1.51
PTPN7-204	ENST00000462815	VPS25	Q9BRG1	176 aa		5.61	□□□□□ -1.51
PTPN7-204	ENST00000462815		A0A1B0GW54	56 aa		5.6	□□□□□ -1.51
PTPN7-204	ENST00000462815		A0A087WSZ3	146 aa		5.59	□□□□□ -1.51
PTPN7-204	ENST00000462815	MPLKIP	Q8TAP9	179 aa		5.59	□□□□□ -1.51
PTPN7-204	ENST00000462815	LINC00472	Q9H8W2	130 aa		5.55	□□□□□ -1.52
PTPN7-204	ENST00000462815	LINC00846	Q9NV44	126 aa		5.55	□□□□□ -1.52
PTPN7-204	ENST00000462815	SS18L2	Q9UHA2	77 aa		5.55	□□□□□ -1.52
PTPN7-204	ENST00000462815	HRES1	P13985	223 aa		5.54	□□□□□ -1.52
PTPN7-204	ENST00000462815	FAM240A	A0A1B0GVK7	77 aa		5.53	□□□□□ -1.52
PTPN7-204	ENST00000462815	ACYP1	P07311	99 aa		5.53	□□□□□ -1.52
PTPN7-204	ENST00000462815	DSCR10	P59022	87 aa		5.53	□□□□□ -1.52
PTPN7-204	ENST00000462815	KRTAP10-10	P60014	251 aa		5.52	□□□□□ -1.53
PTPN7-204	ENST00000462815	FAM236D	A0A1B0GTK5	79 aa		5.51	□□□□□ -1.53
PTPN7-204	ENST00000462815	FAM236C	P0DP71	79 aa		5.51	□□□□□ -1.53
PTPN7-204	ENST00000462815	NREP	Q16612	68 aa		5.51	□□□□□ -1.53
PTPN7-204	ENST00000462815		Q6ZVQ6	151 aa		5.51	□□□□□ -1.53
PTPN7-204	ENST00000462815		J3QR89	54 aa		5.5	□□□□□ -1.53
PTPN7-204	ENST00000462815	DEFB116	Q30KQ4	102 aa		5.5	□□□□□ -1.53
PTPN7-204	ENST00000462815	KRTAP19-6	Q3LI70	58 aa		5.49	□□□□□ -1.53
PTPN7-204	ENST00000462815	NOTCH2NL	Q7Z3S9	236 aa		5.48	□□□□□ -1.53
PTPN7-204	ENST00000462815	UBL5	Q9BZL1	73 aa		5.48	□□□□□ -1.53
PTPN7-204	ENST00000462815		K7ERU9	68 aa		5.47	□□□□□ -1.53
PTPN7-204	ENST00000462815	IGKV4-1	P06312	121 aa		5.47	□□□□□ -1.53
PTPN7-204	ENST00000462815		J3KT08	172 aa		5.45	□□□□□ -1.54
PTPN7-204	ENST00000462815	BPY2	O14599	106 aa		5.44	□□□□□ -1.54
PTPN7-204	ENST00000462815	LINC00313	P59037	77 aa		5.44	□□□□□ -1.54
PTPN7-204	ENST00000462815	SIGMAR1	Q99720	223 aa		5.44	□□□□□ -1.54
PTPN7-204	ENST00000462815	RBM12B-AS1	Q9P1G2	102 aa		5.43	□□□□□ -1.54
PTPN7-204	ENST00000462815	IGKV3D-7	A0A0C4DH55	119 aa		5.42	□□□□□ -1.54
PTPN7-204	ENST00000462815		A8MWP4	228 aa		5.42	□□□□□ -1.54
PTPN7-204	ENST00000462815	CXCL6	P80162	114 aa		5.42	□□□□□ -1.54
PTPN7-204	ENST00000462815	LINC00643	Q86TS7	51 aa		5.42	□□□□□ -1.54
PTPN7-204	ENST00000462815		A0A1B0GVX0	72 aa		5.41	□□□□□ -1.54
PTPN7-204	ENST00000462815	PRR15	Q8IV56	129 aa		5.4	□□□□□ -1.54
PTPN7-204	ENST00000462815		K7EQZ3	153 aa		5.39	□□□□□ -1.55
PTPN7-204	ENST00000462815		Q8N9L7	120 aa		5.39	□□□□□ -1.55
PTPN7-204	ENST00000462815	IGHV6-1	A0A0B4J1U7	121 aa		5.38	□□□□□ -1.55
PTPN7-204	ENST00000462815	NDUFB1	O75438	58 aa		5.38	□□□□□ -1.55
PTPN7-204	ENST00000462815	ATP5EP2	Q5VTU8	51 aa		5.38	□□□□□ -1.55
PTPN7-204	ENST00000462815	C8orf87	E5RJ46	101 aa		5.36	□□□□□ -1.55
PTPN7-204	ENST00000462815	KRTAP6-3	Q3LI67	103 aa		5.36	□□□□□ -1.55
PTPN7-204	ENST00000462815	C8orf17	Q9NRJ1	99 aa		5.36	□□□□□ -1.55
PTPN7-204	ENST00000462815	MMP24-AS1	A0A0U1RRL7	71 aa		5.35	□□□□□ -1.55
PTPN7-204	ENST00000462815	MT-ATP8	P03928	68 aa		5.34	□□□□□ -1.55
PTPN7-204	ENST00000462815	SPINK7	P58062	85 aa		5.32	□□□□□ -1.56
PTPN7-204	ENST00000462815	ZCCHC13	Q8WW36	166 aa	Known RBP	5.32	□□□□□ -1.56
PTPN7-204	ENST00000462815	NEB	P20929	6669 aa		5.3	□□□□□ -1.56
PTPN7-204	ENST00000462815		A0A087WVE0	104 aa		5.3	□□□□□ -1.56
PTPN7-204	ENST00000462815	hDV103S1	A0JD37	113 aa		5.3	□□□□□ -1.56
PTPN7-204	ENST00000462815	HCG22	E2RYF7	251 aa		5.3	□□□□□ -1.56
PTPN7-204	ENST00000462815	HIST1H4A	P62805	103 aa	Known RBP	5.3	□□□□□ -1.56
PTPN7-204	ENST00000462815	TMEM254	Q8TBM7	123 aa		5.3	□□□□□ -1.56
PTPN7-204	ENST00000462815	WFDC13	Q8IUB5	93 aa		5.29	□□□□□ -1.56
PTPN7-204	ENST00000462815		Q8N9P0	234 aa	Predicted RBP	5.29	□□□□□ -1.56
PTPN7-204	ENST00000462815	IMUP	Q9GZP8	106 aa		5.29	□□□□□ -1.56
PTPN7-204	ENST00000462815	CASC2	Q6XLA1	102 aa		5.28	□□□□□ -1.56
PTPN7-204	ENST00000462815	MRPL34	Q9BQ48	92 aa	Known RBP	5.28	□□□□□ -1.56
PTPN7-204	ENST00000462815	MUC12	Q9UKN1	5478 aa		5.26	□□□□□ -1.57
PTPN7-204	ENST00000462815	NDUFS5	O43920	106 aa		5.19	□□□□□ -1.58
PTPN7-204	ENST00000462815		Q5W150	140 aa		5.19	□□□□□ -1.58
PTPN7-204	ENST00000462815	OCR1	Q9BZK8	76 aa		5.18	□□□□□ -1.58
PTPN7-204	ENST00000462815	FAM236A	A0A1B0GUQ0	79 aa		5.17	□□□□□ -1.58
PTPN7-204	ENST00000462815	FAM236B	A0A1B0GV22	79 aa		5.17	□□□□□ -1.58
PTPN7-204	ENST00000462815	TP53AIP1	Q9HCN2	124 aa		5.17	□□□□□ -1.58
PTPN7-204	ENST00000462815	H1FX-AS1	Q4G0G2	97 aa		5.15	□□□□□ -1.59
PTPN7-204	ENST00000462815	UQCRQ	O14949	82 aa		5.14	□□□□□ -1.59
PTPN7-204	ENST00000462815	SCGB1A1	P11684	91 aa		5.13	□□□□□ -1.59
PTPN7-204	ENST00000462815	MT1B	P07438	61 aa		5.12	□□□□□ -1.59
PTPN7-204	ENST00000462815	ATOX1	O00244	68 aa		5.11	□□□□□ -1.59
PTPN7-204	ENST00000462815	KRTAP20-1	Q3LI63	56 aa		5.11	□□□□□ -1.59
PTPN7-204	ENST00000462815	MDN1	Q9NU22	5596 aa		5.1	□□□□□ -1.59
PTPN7-204	ENST00000462815	TRAV7	A0A075B6U4	112 aa		5.09	□□□□□ -1.59
PTPN7-204	ENST00000462815	TRAV22	A0A0B4J277	110 aa		5.09	□□□□□ -1.59
PTPN7-204	ENST00000462815	SMIM20	Q8N5G0	67 aa		5.09	□□□□□ -1.59

Retrieved 100 of 20,778 RNA–protein pairs in 157.3 ms