RNA–Protein interactions for RNA: ENST00000409025.5

USP39-202, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 5 BASIC

Gene USP39, Length 1,946 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-202ENST00000409025 C5orf47Q569G3 176 aa10.95□□□□□ -0.66
USP39-202ENST00000409025 PRR26Q8N8Z3 221 aa10.94□□□□□ -0.66
USP39-202ENST00000409025 NDUFC1O43677 76 aa10.92□□□□□ -0.66
USP39-202ENST00000409025 H7BZZ5 65 aa10.92□□□□□ -0.66
USP39-202ENST00000409025 SPINK1P00995 79 aa10.91□□□□□ -0.66
USP39-202ENST00000409025 C1orf195Q5TG92 126 aa10.9□□□□□ -0.66
USP39-202ENST00000409025 LINC00304Q8N9R0 145 aa10.88□□□□□ -0.67
USP39-202ENST00000409025 FAM229AH3BQW9 127 aa10.87□□□□□ -0.67
USP39-202ENST00000409025 NOTCH2NLQ7Z3S9 236 aa10.87□□□□□ -0.67
USP39-202ENST00000409025 MP68P56378 58 aa10.86□□□□□ -0.67
USP39-202ENST00000409025 MRPL34Q9BQ48 92 aaKnown RBP10.86□□□□□ -0.67
USP39-202ENST00000409025 SPAG11AQ6PDA7 123 aa10.86□□□□□ -0.67
USP39-202ENST00000409025 C8orf87E5RJ46 101 aa10.85□□□□□ -0.67
USP39-202ENST00000409025 TP53AIP1Q9HCN2 124 aa10.84□□□□□ -0.67
USP39-202ENST00000409025 H0Y9P7 68 aa10.82□□□□□ -0.68
USP39-202ENST00000409025 RPS29P62273 56 aaKnown RBP10.82□□□□□ -0.68
USP39-202ENST00000409025 NDUFS5O43920 106 aa10.82□□□□□ -0.68
USP39-202ENST00000409025 ZCCHC13Q8WW36 166 aaKnown RBP10.82□□□□□ -0.68
USP39-202ENST00000409025 FAM236DA0A1B0GTK5 79 aa10.81□□□□□ -0.68
USP39-202ENST00000409025 FAM236CP0DP71 79 aa10.81□□□□□ -0.68
USP39-202ENST00000409025 FAT1Q14517 4588 aa10.8□□□□□ -0.68
USP39-202ENST00000409025 H3BPC8 53 aa10.79□□□□□ -0.68
USP39-202ENST00000409025 LINC00313P59037 77 aa10.79□□□□□ -0.68
USP39-202ENST00000409025 TRAV22A0A0B4J277 110 aa10.78□□□□□ -0.68
USP39-202ENST00000409025 LINC00208Q96KT6 92 aa10.78□□□□□ -0.68
USP39-202ENST00000409025 Q5VSD8 79 aa10.76□□□□□ -0.69
USP39-202ENST00000409025 ATP5EP56381 51 aaPredicted RBP10.73□□□□□ -0.69
USP39-202ENST00000409025 C1orf64Q8NEQ6 169 aa10.72□□□□□ -0.69
USP39-202ENST00000409025 EPPK1P58107 5090 aaKnown RBP10.7□□□□□ -0.7
USP39-202ENST00000409025 PKHD1L1Q86WI1 4243 aa10.7□□□□□ -0.7
USP39-202ENST00000409025 RPS28P62857 69 aaKnown RBP10.7□□□□□ -0.7
USP39-202ENST00000409025 Q8N9P0 234 aaPredicted RBP10.65□□□□□ -0.7
USP39-202ENST00000409025 HSPG2P98160 4391 aa10.64□□□□□ -0.71
USP39-202ENST00000409025 KRTAP16-1A8MUX0 517 aa10.64□□□□□ -0.71
USP39-202ENST00000409025 SERP1Q9Y6X1 66 aa10.62□□□□□ -0.71
USP39-202ENST00000409025 RYR1P21817 5038 aa10.61□□□□□ -0.71
USP39-202ENST00000409025 Q5W150 140 aa10.6□□□□□ -0.71
USP39-202ENST00000409025 KRTAP13-3Q3SY46 172 aa10.58□□□□□ -0.72
USP39-202ENST00000409025 KRTAP10-8P60410 259 aa10.57□□□□□ -0.72
USP39-202ENST00000409025 Q8N1X5 172 aa10.56□□□□□ -0.72
USP39-202ENST00000409025 KRTAP17-1Q9BYP8 105 aa10.56□□□□□ -0.72
USP39-202ENST00000409025 LOC101927531A0A1B0GV80 90 aa10.55□□□□□ -0.72
USP39-202ENST00000409025 OXTP01178 125 aa10.55□□□□□ -0.72
USP39-202ENST00000409025 SPANXA2-OT1Q8N9U9 137 aa10.54□□□□□ -0.72
USP39-202ENST00000409025 PCOTHQ58A44 107 aa10.52□□□□□ -0.73
USP39-202ENST00000409025 CYP4F30PQ9H0H9 118 aa10.52□□□□□ -0.73
USP39-202ENST00000409025 PRR4Q16378 134 aa10.51□□□□□ -0.73
USP39-202ENST00000409025 RETNLBQ9BQ08 111 aa10.51□□□□□ -0.73
USP39-202ENST00000409025 KIAA1109Q2LD37 5005 aa10.49□□□□□ -0.73
USP39-202ENST00000409025 IGLV7-46A0A075B6I9 117 aa10.45□□□□□ -0.74
USP39-202ENST00000409025 FLG2Q5D862 2391 aaPredicted RBP10.45□□□□□ -0.74
USP39-202ENST00000409025 C9orf92A6NGG3 77 aa10.45□□□□□ -0.74
USP39-202ENST00000409025 TNXBP22105 4242 aa10.42□□□□□ -0.74
USP39-202ENST00000409025 IGKV2-30P06310 120 aa10.41□□□□□ -0.74
USP39-202ENST00000409025 LRP1Q07954 4544 aaKnown RBP10.4□□□□□ -0.74
USP39-202ENST00000409025 BIRC6Q9NR09 4857 aa10.38□□□□□ -0.75
USP39-202ENST00000409025 SMIM26A0A096LP01 95 aa10.38□□□□□ -0.75
USP39-202ENST00000409025 C20orf166-AS1Q96NR2 134 aa10.37□□□□□ -0.75
USP39-202ENST00000409025 A8MUU9 505 aa10.37□□□□□ -0.75
USP39-202ENST00000409025 FAT3Q8TDW7 4589 aa10.35□□□□□ -0.75
USP39-202ENST00000409025 MT1HL1P0DM35 61 aa10.35□□□□□ -0.75
USP39-202ENST00000409025 FP248Q71RG6 208 aaPredicted RBP10.35□□□□□ -0.75
USP39-202ENST00000409025 IGKV2D-30A0A075B6S6 120 aa10.33□□□□□ -0.76
USP39-202ENST00000409025 HRES1P13985 223 aa10.3□□□□□ -0.76
USP39-202ENST00000409025 Q75L30 129 aa10.25□□□□□ -0.77
USP39-202ENST00000409025 COA5Q86WW8 74 aa10.25□□□□□ -0.77
USP39-202ENST00000409025 C7orf65Q6ZTY9 151 aa10.25□□□□□ -0.77
USP39-202ENST00000409025 DMBT1Q9UGM3 2413 aaPredicted RBP10.23□□□□□ -0.77
USP39-202ENST00000409025 KRTAP4-5Q9BYR2 181 aa10.23□□□□□ -0.77
USP39-202ENST00000409025 MPLKIPQ8TAP9 179 aa10.19□□□□□ -0.78
USP39-202ENST00000409025 ACYP2P14621 99 aa10.18□□□□□ -0.78
USP39-202ENST00000409025 DMAC1Q96GE9 116 aa10.18□□□□□ -0.78
USP39-202ENST00000409025 HERC2O95714 4834 aa10.17□□□□□ -0.78
USP39-202ENST00000409025 C4orf26Q17RF5 130 aa10.17□□□□□ -0.78
USP39-202ENST00000409025 MYCBP2O75592 4640 aa10.16□□□□□ -0.78
USP39-202ENST00000409025 Q1T7F1 81 aa10.11□□□□□ -0.79
USP39-202ENST00000409025 XP32Q5T750 250 aa10.11□□□□□ -0.79
USP39-202ENST00000409025 ATP11AUNQ6ZP68 121 aa10.11□□□□□ -0.79
USP39-202ENST00000409025 RPL37P61927 97 aaKnown RBP10.1□□□□□ -0.79
USP39-202ENST00000409025 SPINK7P58062 85 aa10.08□□□□□ -0.8
USP39-202ENST00000409025 V9GYY9 64 aa10.07□□□□□ -0.8
USP39-202ENST00000409025 ABCA13Q86UQ4 5058 aa10.07□□□□□ -0.8
USP39-202ENST00000409025 CHKB-CPT1BH3BT56 60 aa10.04□□□□□ -0.8
USP39-202ENST00000409025 A8MUN3 132 aa10.01□□□□□ -0.81
USP39-202ENST00000409025 TPRXLQ17RH7 258 aa10□□□□□ -0.81
USP39-202ENST00000409025 J3QL48 77 aa9.98□□□□□ -0.81
USP39-202ENST00000409025 PSPHP1O15172 72 aa9.94□□□□□ -0.82
USP39-202ENST00000409025 LINC01558Q9Y6Z2 57 aa9.91□□□□□ -0.82
USP39-202ENST00000409025 PRR15LQ9BU68 103 aa9.89□□□□□ -0.83
USP39-202ENST00000409025 PCLOQ9Y6V0 5065 aa9.88□□□□□ -0.83
USP39-202ENST00000409025 COX6B2Q6YFQ2 88 aa9.87□□□□□ -0.83
USP39-202ENST00000409025 KRTAP3-1Q9BYR8 98 aa9.87□□□□□ -0.83
USP39-202ENST00000409025 Q5VV11 94 aa9.84□□□□□ -0.83
USP39-202ENST00000409025 SPTSSBQ8NFR3 76 aa9.77□□□□□ -0.85
USP39-202ENST00000409025 BRK1Q8WUW1 75 aa9.73□□□□□ -0.85
USP39-202ENST00000409025 A0A1B0GU69 56 aa9.7□□□□□ -0.86
USP39-202ENST00000409025 LPAP08519 4548 aa9.68□□□□□ -0.86
USP39-202ENST00000409025 SEC61BP60468 96 aaKnown RBP9.67□□□□□ -0.86
USP39-202ENST00000409025 LRP2P98164 4655 aa9.67□□□□□ -0.86
USP39-202ENST00000409025 A6NED7 52 aa9.64□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 46.9 ms