RNA–Protein interactions for RNA: ENST00000374943.8

HLA-DQB1-201, Transcript of major histocompatibility complex, class II, DQ beta 1, humanhuman

BASIC

Gene HLA-DQB1, Length 1,656 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DQB1-201ENST00000374943 C8orf17Q9NRJ1 99 aa10.44□□□□□ -0.74
HLA-DQB1-201ENST00000374943 hDV103S1A0JD37 113 aa10.43□□□□□ -0.74
HLA-DQB1-201ENST00000374943 SMR3BP02814 79 aaPredicted RBP10.43□□□□□ -0.74
HLA-DQB1-201ENST00000374943 KRTAP10-4P60372 401 aaPredicted RBP10.43□□□□□ -0.74
HLA-DQB1-201ENST00000374943 C5orf47Q569G3 176 aa10.43□□□□□ -0.74
HLA-DQB1-201ENST00000374943 RYR1P21817 5038 aa10.4□□□□□ -0.74
HLA-DQB1-201ENST00000374943 IGHV6-1A0A0B4J1U7 121 aa10.4□□□□□ -0.74
HLA-DQB1-201ENST00000374943 TYMSOSQ8TAI1 123 aa10.4□□□□□ -0.74
HLA-DQB1-201ENST00000374943 LIMD2Q9BT23 127 aa10.39□□□□□ -0.75
HLA-DQB1-201ENST00000374943 FAT1Q14517 4588 aa10.38□□□□□ -0.75
HLA-DQB1-201ENST00000374943 ZCCHC13Q8WW36 166 aaKnown RBP10.37□□□□□ -0.75
HLA-DQB1-201ENST00000374943 PKHD1L1Q86WI1 4243 aa10.36□□□□□ -0.75
HLA-DQB1-201ENST00000374943 C1orf195Q5TG92 126 aa10.34□□□□□ -0.75
HLA-DQB1-201ENST00000374943 SPINK1P00995 79 aa10.34□□□□□ -0.75
HLA-DQB1-201ENST00000374943 FAM236DA0A1B0GTK5 79 aa10.33□□□□□ -0.76
HLA-DQB1-201ENST00000374943 C8orf87E5RJ46 101 aa10.33□□□□□ -0.76
HLA-DQB1-201ENST00000374943 FAM236CP0DP71 79 aa10.33□□□□□ -0.76
HLA-DQB1-201ENST00000374943 MP68P56378 58 aa10.33□□□□□ -0.76
HLA-DQB1-201ENST00000374943 C4orf48Q5BLP8 95 aa10.33□□□□□ -0.76
HLA-DQB1-201ENST00000374943 MRPL34Q9BQ48 92 aaKnown RBP10.32□□□□□ -0.76
HLA-DQB1-201ENST00000374943 TP53AIP1Q9HCN2 124 aa10.32□□□□□ -0.76
HLA-DQB1-201ENST00000374943 H3BPC8 53 aa10.31□□□□□ -0.76
HLA-DQB1-201ENST00000374943 RPS29P62273 56 aaKnown RBP10.31□□□□□ -0.76
HLA-DQB1-201ENST00000374943 NOTCH2NLQ7Z3S9 236 aa10.31□□□□□ -0.76
HLA-DQB1-201ENST00000374943 PRR26Q8N8Z3 221 aa10.31□□□□□ -0.76
HLA-DQB1-201ENST00000374943 H0Y9P7 68 aa10.29□□□□□ -0.76
HLA-DQB1-201ENST00000374943 ATP5EP56381 51 aaPredicted RBP10.29□□□□□ -0.76
HLA-DQB1-201ENST00000374943 ABCA13Q86UQ4 5058 aa10.28□□□□□ -0.76
HLA-DQB1-201ENST00000374943 SPAG11AQ6PDA7 123 aa10.28□□□□□ -0.76
HLA-DQB1-201ENST00000374943 LINC00304Q8N9R0 145 aa10.28□□□□□ -0.76
HLA-DQB1-201ENST00000374943 RPS28P62857 69 aaKnown RBP10.28□□□□□ -0.76
HLA-DQB1-201ENST00000374943 KRTAP4-5Q9BYR2 181 aa10.28□□□□□ -0.76
HLA-DQB1-201ENST00000374943 TRAV22A0A0B4J277 110 aa10.27□□□□□ -0.77
HLA-DQB1-201ENST00000374943 LINC00208Q96KT6 92 aa10.24□□□□□ -0.77
HLA-DQB1-201ENST00000374943 FAM229AH3BQW9 127 aa10.22□□□□□ -0.77
HLA-DQB1-201ENST00000374943 NDUFS5O43920 106 aa10.22□□□□□ -0.77
HLA-DQB1-201ENST00000374943 LINC00313P59037 77 aa10.22□□□□□ -0.77
HLA-DQB1-201ENST00000374943 HSPG2P98160 4391 aa10.2□□□□□ -0.78
HLA-DQB1-201ENST00000374943 C1orf64Q8NEQ6 169 aa10.18□□□□□ -0.78
HLA-DQB1-201ENST00000374943 SERP1Q9Y6X1 66 aa10.17□□□□□ -0.78
HLA-DQB1-201ENST00000374943 KRTAP16-1A8MUX0 517 aa10.15□□□□□ -0.79
HLA-DQB1-201ENST00000374943 Q8N9P0 234 aaPredicted RBP10.15□□□□□ -0.79
HLA-DQB1-201ENST00000374943 Q5VSD8 79 aa10.13□□□□□ -0.79
HLA-DQB1-201ENST00000374943 OXTP01178 125 aa10.12□□□□□ -0.79
HLA-DQB1-201ENST00000374943 KRTAP13-3Q3SY46 172 aa10.12□□□□□ -0.79
HLA-DQB1-201ENST00000374943 SPANXA2-OT1Q8N9U9 137 aa10.09□□□□□ -0.79
HLA-DQB1-201ENST00000374943 CYP4F30PQ9H0H9 118 aa10.09□□□□□ -0.79
HLA-DQB1-201ENST00000374943 Q5W150 140 aa10.07□□□□□ -0.8
HLA-DQB1-201ENST00000374943 LOC101927531A0A1B0GV80 90 aa10.05□□□□□ -0.8
HLA-DQB1-201ENST00000374943 TNXBP22105 4242 aa10.03□□□□□ -0.8
HLA-DQB1-201ENST00000374943 Q8N1X5 172 aa10.02□□□□□ -0.8
HLA-DQB1-201ENST00000374943 KRTAP10-8P60410 259 aa10.02□□□□□ -0.81
HLA-DQB1-201ENST00000374943 FLG2Q5D862 2391 aaPredicted RBP10.01□□□□□ -0.81
HLA-DQB1-201ENST00000374943 FAT3Q8TDW7 4589 aa9.98□□□□□ -0.81
HLA-DQB1-201ENST00000374943 IGLV7-46A0A075B6I9 117 aa9.98□□□□□ -0.81
HLA-DQB1-201ENST00000374943 LRP1Q07954 4544 aaKnown RBP9.98□□□□□ -0.81
HLA-DQB1-201ENST00000374943 PCOTHQ58A44 107 aa9.97□□□□□ -0.81
HLA-DQB1-201ENST00000374943 PRR4Q16378 134 aa9.96□□□□□ -0.81
HLA-DQB1-201ENST00000374943 SMIM26A0A096LP01 95 aa9.93□□□□□ -0.82
HLA-DQB1-201ENST00000374943 HERC1Q15751 4861 aa9.92□□□□□ -0.82
HLA-DQB1-201ENST00000374943 IGKV2-30P06310 120 aa9.91□□□□□ -0.82
HLA-DQB1-201ENST00000374943 RETNLBQ9BQ08 111 aa9.89□□□□□ -0.83
HLA-DQB1-201ENST00000374943 C20orf166-AS1Q96NR2 134 aa9.87□□□□□ -0.83
HLA-DQB1-201ENST00000374943 A8MUU9 505 aa9.87□□□□□ -0.83
HLA-DQB1-201ENST00000374943 FP248Q71RG6 208 aaPredicted RBP9.86□□□□□ -0.83
HLA-DQB1-201ENST00000374943 C9orf92A6NGG3 77 aa9.84□□□□□ -0.83
HLA-DQB1-201ENST00000374943 DMBT1Q9UGM3 2413 aaPredicted RBP9.83□□□□□ -0.84
HLA-DQB1-201ENST00000374943 MT1HL1P0DM35 61 aa9.81□□□□□ -0.84
HLA-DQB1-201ENST00000374943 HRES1P13985 223 aa9.8□□□□□ -0.84
HLA-DQB1-201ENST00000374943 COA5Q86WW8 74 aa9.77□□□□□ -0.84
HLA-DQB1-201ENST00000374943 IGKV2D-30A0A075B6S6 120 aa9.77□□□□□ -0.85
HLA-DQB1-201ENST00000374943 MYCBP2O75592 4640 aa9.75□□□□□ -0.85
HLA-DQB1-201ENST00000374943 C7orf65Q6ZTY9 151 aa9.74□□□□□ -0.85
HLA-DQB1-201ENST00000374943 Q75L30 129 aa9.74□□□□□ -0.85
HLA-DQB1-201ENST00000374943 C4orf26Q17RF5 130 aa9.72□□□□□ -0.85
HLA-DQB1-201ENST00000374943 DMAC1Q96GE9 116 aa9.72□□□□□ -0.85
HLA-DQB1-201ENST00000374943 Q1T7F1 81 aa9.7□□□□□ -0.86
HLA-DQB1-201ENST00000374943 MPLKIPQ8TAP9 179 aa9.68□□□□□ -0.86
HLA-DQB1-201ENST00000374943 ACYP2P14621 99 aa9.67□□□□□ -0.86
HLA-DQB1-201ENST00000374943 V9GYY9 64 aa9.63□□□□□ -0.87
HLA-DQB1-201ENST00000374943 J3QL48 77 aa9.62□□□□□ -0.87
HLA-DQB1-201ENST00000374943 RPL37P61927 97 aaKnown RBP9.58□□□□□ -0.88
HLA-DQB1-201ENST00000374943 XP32Q5T750 250 aa9.58□□□□□ -0.88
HLA-DQB1-201ENST00000374943 A8MUN3 132 aa9.55□□□□□ -0.88
HLA-DQB1-201ENST00000374943 SPINK7P58062 85 aa9.55□□□□□ -0.88
HLA-DQB1-201ENST00000374943 ATP11AUNQ6ZP68 121 aa9.54□□□□□ -0.88
HLA-DQB1-201ENST00000374943 CHKB-CPT1BH3BT56 60 aa9.51□□□□□ -0.89
HLA-DQB1-201ENST00000374943 TPRXLQ17RH7 258 aa9.48□□□□□ -0.89
HLA-DQB1-201ENST00000374943 LINC01558Q9Y6Z2 57 aa9.48□□□□□ -0.89
HLA-DQB1-201ENST00000374943 PSPHP1O15172 72 aa9.46□□□□□ -0.89
HLA-DQB1-201ENST00000374943 HMCN2Q8NDA2 5059 aa9.44□□□□□ -0.9
HLA-DQB1-201ENST00000374943 Q5VV11 94 aa9.42□□□□□ -0.9
HLA-DQB1-201ENST00000374943 PRR15LQ9BU68 103 aa9.42□□□□□ -0.9
HLA-DQB1-201ENST00000374943 KRTAP3-1Q9BYR8 98 aa9.39□□□□□ -0.91
HLA-DQB1-201ENST00000374943 COX6B2Q6YFQ2 88 aa9.38□□□□□ -0.91
HLA-DQB1-201ENST00000374943 UBR4Q5T4S7 5183 aa9.38□□□□□ -0.91
HLA-DQB1-201ENST00000374943 LRP2P98164 4655 aa9.29□□□□□ -0.92
HLA-DQB1-201ENST00000374943 SPTSSBQ8NFR3 76 aa9.28□□□□□ -0.92
HLA-DQB1-201ENST00000374943 BRK1Q8WUW1 75 aa9.27□□□□□ -0.93
HLA-DQB1-201ENST00000374943 PRO0628Q9UI54 55 aa9.24□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 100.7 ms