RNA–Protein interactions for RNA: ENST00000374116.3

HMGA1-203, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene HMGA1, Length 1,848 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-203ENST00000374116 K7EQZ3 153 aa8.73□□□□□ -1.01
HMGA1-203ENST00000374116 SPRR1BP22528 89 aa8.72□□□□□ -1.01
HMGA1-203ENST00000374116 KRTAP4-5Q9BYR2 181 aa8.72□□□□□ -1.01
HMGA1-203ENST00000374116 MP68P56378 58 aa8.71□□□□□ -1.01
HMGA1-203ENST00000374116 IGFL1Q6UW32 110 aa8.71□□□□□ -1.01
HMGA1-203ENST00000374116 Q8N9P0 234 aaPredicted RBP8.71□□□□□ -1.01
HMGA1-203ENST00000374116 PCLOQ9Y6V0 5065 aa8.69□□□□□ -1.02
HMGA1-203ENST00000374116 NDUFS5O43920 106 aa8.69□□□□□ -1.02
HMGA1-203ENST00000374116 ATP11AUNQ6ZP68 121 aa8.69□□□□□ -1.02
HMGA1-203ENST00000374116 FAT1Q14517 4588 aa8.69□□□□□ -1.02
HMGA1-203ENST00000374116 Q75L30 129 aa8.68□□□□□ -1.02
HMGA1-203ENST00000374116 VPS13BQ7Z7G8 4022 aa8.68□□□□□ -1.02
HMGA1-203ENST00000374116 LOC101927531A0A1B0GV80 90 aa8.68□□□□□ -1.02
HMGA1-203ENST00000374116 Q5VSD8 79 aa8.68□□□□□ -1.02
HMGA1-203ENST00000374116 Q8N1X5 172 aa8.68□□□□□ -1.02
HMGA1-203ENST00000374116 LINC00208Q96KT6 92 aa8.68□□□□□ -1.02
HMGA1-203ENST00000374116 KRTAP13-1Q8IUC0 172 aa8.67□□□□□ -1.02
HMGA1-203ENST00000374116 SRRM2Q9UQ35 2752 aaKnown RBP8.65□□□□□ -1.02
HMGA1-203ENST00000374116 CHKB-CPT1BH3BT56 60 aa8.65□□□□□ -1.02
HMGA1-203ENST00000374116 PRR4Q16378 134 aa8.65□□□□□ -1.02
HMGA1-203ENST00000374116 A0A0G2JQZ4 141 aa8.64□□□□□ -1.03
HMGA1-203ENST00000374116 RBM12B-AS1Q9P1G2 102 aa8.64□□□□□ -1.03
HMGA1-203ENST00000374116 A6NN06 94 aa8.64□□□□□ -1.03
HMGA1-203ENST00000374116 A8MU10 97 aa8.64□□□□□ -1.03
HMGA1-203ENST00000374116 KRTAP29-1A8MX34 341 aaPredicted RBP8.64□□□□□ -1.03
HMGA1-203ENST00000374116 FAM229AH3BQW9 127 aa8.64□□□□□ -1.03
HMGA1-203ENST00000374116 RPL37AP61513 92 aaKnown RBP8.62□□□□□ -1.03
HMGA1-203ENST00000374116 A0A087WSZ3 146 aa8.61□□□□□ -1.03
HMGA1-203ENST00000374116 KRTAP10-4P60372 401 aaPredicted RBP8.61□□□□□ -1.03
HMGA1-203ENST00000374116 PRR15LQ9BU68 103 aa8.61□□□□□ -1.03
HMGA1-203ENST00000374116 PSORS1C2Q9UIG4 136 aa8.61□□□□□ -1.03
HMGA1-203ENST00000374116 LCA10Q71F78 164 aa8.6□□□□□ -1.03
HMGA1-203ENST00000374116 CDC42SE1Q9NRR8 79 aa8.59□□□□□ -1.03
HMGA1-203ENST00000374116 PLA2G1BP04054 148 aaKnown RBP8.58□□□□□ -1.04
HMGA1-203ENST00000374116 H0Y9P7 68 aa8.57□□□□□ -1.04
HMGA1-203ENST00000374116 ABCA13Q86UQ4 5058 aa8.56□□□□□ -1.04
HMGA1-203ENST00000374116 LINC00483Q53H64 154 aa8.54□□□□□ -1.04
HMGA1-203ENST00000374116 WFDC13Q8IUB5 93 aa8.54□□□□□ -1.04
HMGA1-203ENST00000374116 ZNF706Q9Y5V0 76 aaPredicted RBP8.54□□□□□ -1.04
HMGA1-203ENST00000374116 IGLV7-46A0A075B6I9 117 aa8.54□□□□□ -1.04
HMGA1-203ENST00000374116 C7orf65Q6ZTY9 151 aa8.54□□□□□ -1.04
HMGA1-203ENST00000374116 DEFB116Q30KQ4 102 aa8.53□□□□□ -1.04
HMGA1-203ENST00000374116 FLG2Q5D862 2391 aaPredicted RBP8.53□□□□□ -1.04
HMGA1-203ENST00000374116 A6NED7 52 aa8.52□□□□□ -1.04
HMGA1-203ENST00000374116 COA5Q86WW8 74 aa8.52□□□□□ -1.04
HMGA1-203ENST00000374116 LINC01558Q9Y6Z2 57 aa8.52□□□□□ -1.04
HMGA1-203ENST00000374116 CASC2Q6XLA1 102 aa8.51□□□□□ -1.05
HMGA1-203ENST00000374116 SPTSSBQ8NFR3 76 aa8.51□□□□□ -1.05
HMGA1-203ENST00000374116 LINC00472Q9H8W2 130 aa8.51□□□□□ -1.05
HMGA1-203ENST00000374116 ZNF861PO60384 105 aa8.5□□□□□ -1.05
HMGA1-203ENST00000374116 IGLV7-43P04211 117 aa8.5□□□□□ -1.05
HMGA1-203ENST00000374116 IGLV9-49A0A0B4J1Y8 123 aa8.48□□□□□ -1.05
HMGA1-203ENST00000374116 A8MWP4 228 aa8.47□□□□□ -1.05
HMGA1-203ENST00000374116 MYCBP2O75592 4640 aa8.46□□□□□ -1.06
HMGA1-203ENST00000374116 MOBPQ13875 183 aa8.45□□□□□ -1.06
HMGA1-203ENST00000374116 LRP1Q07954 4544 aaKnown RBP8.42□□□□□ -1.06
HMGA1-203ENST00000374116 SPINK6Q6UWN8 80 aa8.41□□□□□ -1.06
HMGA1-203ENST00000374116 PKHD1L1Q86WI1 4243 aa8.41□□□□□ -1.06
HMGA1-203ENST00000374116 MMP24-AS1A0A0U1RRL7 71 aa8.39□□□□□ -1.07
HMGA1-203ENST00000374116 ASB16-AS1Q495Z4 193 aa8.39□□□□□ -1.07
HMGA1-203ENST00000374116 Q96NJ1 140 aa8.39□□□□□ -1.07
HMGA1-203ENST00000374116 TP53AIP1Q9HCN2 124 aa8.38□□□□□ -1.07
HMGA1-203ENST00000374116 ANAPC11Q9NYG5 84 aa8.37□□□□□ -1.07
HMGA1-203ENST00000374116 KRTAP1-4P0C5Y4 121 aa8.33□□□□□ -1.08
HMGA1-203ENST00000374116 A0A087X002 238 aa8.32□□□□□ -1.08
HMGA1-203ENST00000374116 C8orf87E5RJ46 101 aa8.31□□□□□ -1.08
HMGA1-203ENST00000374116 SPINK7P58062 85 aa8.31□□□□□ -1.08
HMGA1-203ENST00000374116 SPAG11AQ6PDA7 123 aa8.31□□□□□ -1.08
HMGA1-203ENST00000374116 FAT3Q8TDW7 4589 aa8.31□□□□□ -1.08
HMGA1-203ENST00000374116 HRES1P13985 223 aa8.29□□□□□ -1.08
HMGA1-203ENST00000374116 SSBP3-AS1Q7Z2R9 100 aa8.29□□□□□ -1.08
HMGA1-203ENST00000374116 PRR26Q8N8Z3 221 aa8.29□□□□□ -1.08
HMGA1-203ENST00000374116 A0A1B0GVX0 72 aa8.29□□□□□ -1.08
HMGA1-203ENST00000374116 C8orf17Q9NRJ1 99 aa8.29□□□□□ -1.08
HMGA1-203ENST00000374116 J3QL48 77 aa8.26□□□□□ -1.09
HMGA1-203ENST00000374116 MT1HL1P0DM35 61 aa8.26□□□□□ -1.09
HMGA1-203ENST00000374116 PCOTHQ58A44 107 aa8.26□□□□□ -1.09
HMGA1-203ENST00000374116 DMBT1Q9UGM3 2413 aaPredicted RBP8.26□□□□□ -1.09
HMGA1-203ENST00000374116 IGHV6-1A0A0B4J1U7 121 aa8.25□□□□□ -1.09
HMGA1-203ENST00000374116 C4orf48Q5BLP8 95 aa8.25□□□□□ -1.09
HMGA1-203ENST00000374116 TNXBP22105 4242 aa8.23□□□□□ -1.09
HMGA1-203ENST00000374116 LINC00313P59037 77 aa8.23□□□□□ -1.09
HMGA1-203ENST00000374116 KRTAP10-8P60410 259 aa8.22□□□□□ -1.09
HMGA1-203ENST00000374116 KRTAP13-2Q52LG2 175 aa8.22□□□□□ -1.09
HMGA1-203ENST00000374116 MRPL34Q9BQ48 92 aaKnown RBP8.2□□□□□ -1.1
HMGA1-203ENST00000374116 HERC1Q15751 4861 aa8.2□□□□□ -1.1
HMGA1-203ENST00000374116 TYMSOSQ8TAI1 123 aa8.17□□□□□ -1.1
HMGA1-203ENST00000374116 LINC01554Q52M75 96 aa8.15□□□□□ -1.1
HMGA1-203ENST00000374116 NOTCH2NLQ7Z3S9 236 aa8.15□□□□□ -1.1
HMGA1-203ENST00000374116 SPATA8Q6RVD6 105 aa8.11□□□□□ -1.11
HMGA1-203ENST00000374116 PRAC1Q96KF2 57 aa8.11□□□□□ -1.11
HMGA1-203ENST00000374116 ACYP2P14621 99 aa8.09□□□□□ -1.11
HMGA1-203ENST00000374116 KRTAP13-3Q3SY46 172 aa8.09□□□□□ -1.11
HMGA1-203ENST00000374116 LINC00304Q8N9R0 145 aa8.06□□□□□ -1.12
HMGA1-203ENST00000374116 DMAC1Q96GE9 116 aa8.06□□□□□ -1.12
HMGA1-203ENST00000374116 ADM2Q7Z4H4 148 aa8.03□□□□□ -1.12
HMGA1-203ENST00000374116 Q5W150 140 aa8.01□□□□□ -1.13
HMGA1-203ENST00000374116 A0A1B0GU69 56 aa8□□□□□ -1.13
HMGA1-203ENST00000374116 SPINK1P00995 79 aa8□□□□□ -1.13
HMGA1-203ENST00000374116 RETNLBQ9BQ08 111 aa8□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 11.8 ms