RNA–Protein interactions for RNA: ENST00000366942.3

USH2A-202, Transcript of usherin, humanhuman

TSL 1 (best) BASIC

Gene USH2A, Length 6,320 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH2A-202ENST00000366942 A6NN06 94 aa2.29□□□□□ -2.04
USH2A-202ENST00000366942 TENM2Q9NT68 2774 aa2.29□□□□□ -2.04
USH2A-202ENST00000366942 CR1P17927 2039 aa2.28□□□□□ -2.04
USH2A-202ENST00000366942 AKAP13Q12802 2813 aa2.28□□□□□ -2.05
USH2A-202ENST00000366942 RELNP78509 3460 aa2.27□□□□□ -2.05
USH2A-202ENST00000366942 SPATA8Q6RVD6 105 aa2.26□□□□□ -2.05
USH2A-202ENST00000366942 DMXL1Q9Y485 3027 aa2.26□□□□□ -2.05
USH2A-202ENST00000366942 A8MU10 97 aa2.26□□□□□ -2.05
USH2A-202ENST00000366942 XP32Q5T750 250 aa2.26□□□□□ -2.05
USH2A-202ENST00000366942 PP632Q6XCG6 107 aa2.26□□□□□ -2.05
USH2A-202ENST00000366942 A0A1B0GVY2 172 aa2.25□□□□□ -2.05
USH2A-202ENST00000366942 A0A096LNJ9 63 aa2.25□□□□□ -2.05
USH2A-202ENST00000366942 CELSR3Q9NYQ7 3312 aa2.24□□□□□ -2.05
USH2A-202ENST00000366942 LINC00472Q9H8W2 130 aa2.24□□□□□ -2.05
USH2A-202ENST00000366942 FREM2Q5SZK8 3169 aa2.24□□□□□ -2.05
USH2A-202ENST00000366942 LAMA5O15230 3695 aa2.24□□□□□ -2.05
USH2A-202ENST00000366942 ITPR1Q14643 2758 aa2.24□□□□□ -2.05
USH2A-202ENST00000366942 VPS13CQ709C8 3753 aa2.22□□□□□ -2.05
USH2A-202ENST00000366942 AKAP9Q99996 3911 aa2.22□□□□□ -2.05
USH2A-202ENST00000366942 ROMO1P60602 79 aa2.22□□□□□ -2.05
USH2A-202ENST00000366942 PRO0628Q9UI54 55 aa2.22□□□□□ -2.05
USH2A-202ENST00000366942 SMCPP49901 116 aaPredicted RBP2.22□□□□□ -2.05
USH2A-202ENST00000366942 A0A0C4DFX4 3053 aa2.21□□□□□ -2.05
USH2A-202ENST00000366942 URB1-AS1Q96HZ7 61 aa2.21□□□□□ -2.06
USH2A-202ENST00000366942 LOC400499M0QZD8 3231 aa2.21□□□□□ -2.06
USH2A-202ENST00000366942 NBPF19A0A087WUL8 3843 aa2.21□□□□□ -2.06
USH2A-202ENST00000366942 TENM1Q9UKZ4 2725 aa2.21□□□□□ -2.06
USH2A-202ENST00000366942 KRTAP26-1Q6PEX3 210 aa2.21□□□□□ -2.06
USH2A-202ENST00000366942 CSMD2Q7Z408 3487 aa2.2□□□□□ -2.06
USH2A-202ENST00000366942 KRTAP4-16G5E9R7 235 aaPredicted RBP2.2□□□□□ -2.06
USH2A-202ENST00000366942 KRTAP13-2Q52LG2 175 aa2.2□□□□□ -2.06
USH2A-202ENST00000366942 WDR87Q6ZQQ6 2873 aa2.2□□□□□ -2.06
USH2A-202ENST00000366942 KRTAP13-3Q3SY46 172 aa2.19□□□□□ -2.06
USH2A-202ENST00000366942 ATMQ13315 3056 aa2.19□□□□□ -2.06
USH2A-202ENST00000366942 KRTAP11-1Q8IUC1 163 aa2.19□□□□□ -2.06
USH2A-202ENST00000366942 KALRNO60229 2985 aa2.19□□□□□ -2.06
USH2A-202ENST00000366942 BOD1L1Q8NFC6 3051 aa2.18□□□□□ -2.06
USH2A-202ENST00000366942 DMXL2Q8TDJ6 3036 aa2.18□□□□□ -2.06
USH2A-202ENST00000366942 ZZEF1O43149 2961 aa2.18□□□□□ -2.06
USH2A-202ENST00000366942 LINC00310P59036 64 aa2.18□□□□□ -2.06
USH2A-202ENST00000366942 KRTAP25-1Q3LHN0 102 aa2.17□□□□□ -2.06
USH2A-202ENST00000366942 NBEAQ8NFP9 2946 aa2.16□□□□□ -2.06
USH2A-202ENST00000366942 ADGRG4Q8IZF6 3080 aa2.16□□□□□ -2.06
USH2A-202ENST00000366942 CSMD1Q96PZ7 3565 aa2.15□□□□□ -2.06
USH2A-202ENST00000366942 ZNF469Q96JG9 3925 aaPredicted RBP2.15□□□□□ -2.07
USH2A-202ENST00000366942 LINC01558Q9Y6Z2 57 aa2.13□□□□□ -2.07
USH2A-202ENST00000366942 KRTAP13-1Q8IUC0 172 aa2.11□□□□□ -2.07
USH2A-202ENST00000366942 DCHS2Q6V1P9 2916 aa2.11□□□□□ -2.07
USH2A-202ENST00000366942 KRTAP1-4P0C5Y4 121 aa2.1□□□□□ -2.07
USH2A-202ENST00000366942 MGAQ8IWI9 3026 aa2.1□□□□□ -2.07
USH2A-202ENST00000366942 SVEP1Q4LDE5 3571 aa2.1□□□□□ -2.07
USH2A-202ENST00000366942 DNAH3Q8TD57 4116 aa2.09□□□□□ -2.07
USH2A-202ENST00000366942 OCR1Q9BZK8 76 aa2.09□□□□□ -2.07
USH2A-202ENST00000366942 ANK3Q12955 4377 aaKnown RBP2.09□□□□□ -2.07
USH2A-202ENST00000366942 CMYA5Q8N3K9 4069 aa2.08□□□□□ -2.08
USH2A-202ENST00000366942 CUBNO60494 3623 aa2.08□□□□□ -2.08
USH2A-202ENST00000366942 PRO0461Q9UI25 63 aa2.08□□□□□ -2.08
USH2A-202ENST00000366942 ANK2Q01484 3957 aa2.08□□□□□ -2.08
USH2A-202ENST00000366942 H0YAA0 97 aa2.07□□□□□ -2.08
USH2A-202ENST00000366942 C10orf95Q9H7T3 257 aa2.06□□□□□ -2.08
USH2A-202ENST00000366942 CELSR2Q9HCU4 2923 aa2.05□□□□□ -2.08
USH2A-202ENST00000366942 CRYBG3Q68DQ2 2970 aa2.05□□□□□ -2.08
USH2A-202ENST00000366942 NIPBLQ6KC79 2804 aaeCLIP2.05□□□□□ -2.08
USH2A-202ENST00000366942 ASH1LQ9NR48 2969 aaKnown RBP2.05□□□□□ -2.08
USH2A-202ENST00000366942 LORP23490 312 aaPredicted RBP2.04□□□□□ -2.08
USH2A-202ENST00000366942 DSPP15924 2871 aaKnown RBP2.04□□□□□ -2.08
USH2A-202ENST00000366942 HRNRQ86YZ3 2850 aaPredicted RBP2.02□□□□□ -2.09
USH2A-202ENST00000366942 CELSR1Q9NYQ6 3014 aa2.02□□□□□ -2.09
USH2A-202ENST00000366942 KRTAP9-1A8MXZ3 250 aaPredicted RBP2.01□□□□□ -2.09
USH2A-202ENST00000366942 KRTAP8-1Q8IUC2 63 aa2.01□□□□□ -2.09
USH2A-202ENST00000366942 PRRC2CQ9Y520 2896 aaKnown RBP2.01□□□□□ -2.09
USH2A-202ENST00000366942 CYSTM1Q9H1C7 97 aa2.01□□□□□ -2.09
USH2A-202ENST00000366942 KRTAP10-7P60409 375 aaPredicted RBP2□□□□□ -2.09
USH2A-202ENST00000366942 KRTAP16-1A8MUX0 517 aa2□□□□□ -2.09
USH2A-202ENST00000366942 FBN2P35556 2912 aa1.99□□□□□ -2.09
USH2A-202ENST00000366942 PRAC1Q96KF2 57 aa1.98□□□□□ -2.09
USH2A-202ENST00000366942 OTOGQ6ZRI0 2925 aa1.98□□□□□ -2.09
USH2A-202ENST00000366942 PDZD2O15018 2839 aa1.96□□□□□ -2.09
USH2A-202ENST00000366942 KRTAP10-6P60371 365 aaPredicted RBP1.96□□□□□ -2.1
USH2A-202ENST00000366942 TRRAPQ9Y4A5 3859 aa1.96□□□□□ -2.1
USH2A-202ENST00000366942 CSMD3Q7Z407 3707 aa1.96□□□□□ -2.1
USH2A-202ENST00000366942 LYSTQ99698 3801 aa1.95□□□□□ -2.1
USH2A-202ENST00000366942 KRTAP23-1A1A580 65 aa1.95□□□□□ -2.1
USH2A-202ENST00000366942 LCE2BO14633 110 aa1.95□□□□□ -2.1
USH2A-202ENST00000366942 DYNC2H1Q8NCM8 4307 aaKnown RBP1.95□□□□□ -2.1
USH2A-202ENST00000366942 NF1P21359 2839 aa1.95□□□□□ -2.1
USH2A-202ENST00000366942 KRTAP15-1Q3LI76 137 aa1.95□□□□□ -2.1
USH2A-202ENST00000366942 LRBAP50851 2863 aa1.95□□□□□ -2.1
USH2A-202ENST00000366942 SRRM2Q9UQ35 2752 aaKnown RBP1.93□□□□□ -2.1
USH2A-202ENST00000366942 DNAH7Q8WXX0 4024 aa1.93□□□□□ -2.1
USH2A-202ENST00000366942 PRKDCP78527 4128 aaKnown RBP1.93□□□□□ -2.1
USH2A-202ENST00000366942 MT1HL1P0DM35 61 aa1.93□□□□□ -2.1
USH2A-202ENST00000366942 DNAH1Q9P2D7 4330 aa1.92□□□□□ -2.1
USH2A-202ENST00000366942 PKD1L1Q8TDX9 2849 aa1.92□□□□□ -2.1
USH2A-202ENST00000366942 LCE2CQ5TA81 110 aa1.91□□□□□ -2.1
USH2A-202ENST00000366942 KRTAP7-1Q8IUC3 87 aa1.91□□□□□ -2.1
USH2A-202ENST00000366942 KRTAP4-8Q9BYQ9 185 aa1.91□□□□□ -2.1
USH2A-202ENST00000366942 KRTAP10-12P60413 245 aa1.91□□□□□ -2.1
USH2A-202ENST00000366942 COL12A1Q99715 3063 aa1.91□□□□□ -2.1
USH2A-202ENST00000366942 NDUFAF8A1L188 74 aa1.9□□□□□ -2.1
Retrieved 100 of 20,778 RNA–protein pairs in 65.6 ms