RNA–Protein interactions for RNA: ENST00000361198.9

LDB1-201, Transcript of LIM domain binding 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LDB1, Length 2,285 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDB1-201ENST00000361198 ASB16-AS1Q495Z4 193 aa13.44□□□□□ -0.26
LDB1-201ENST00000361198 SACSQ9NZJ4 4579 aa13.39□□□□□ -0.27
LDB1-201ENST00000361198 BRK1Q8WUW1 75 aa13.37□□□□□ -0.27
LDB1-201ENST00000361198 TP53AIP1Q9HCN2 124 aa13.34□□□□□ -0.27
LDB1-201ENST00000361198 C8orf17Q9NRJ1 99 aa13.34□□□□□ -0.27
LDB1-201ENST00000361198 VPS13BQ7Z7G8 4022 aa13.3□□□□□ -0.28
LDB1-201ENST00000361198 A0A1B0GVX0 72 aa13.3□□□□□ -0.28
LDB1-201ENST00000361198 PKHD1P08F94 4074 aa13.28□□□□□ -0.28
LDB1-201ENST00000361198 V9GYY9 64 aa13.26□□□□□ -0.29
LDB1-201ENST00000361198 IGLV7-46A0A075B6I9 117 aa13.25□□□□□ -0.29
LDB1-201ENST00000361198 SSBP3-AS1Q7Z2R9 100 aa13.25□□□□□ -0.29
LDB1-201ENST00000361198 IGHV6-1A0A0B4J1U7 121 aa13.24□□□□□ -0.29
LDB1-201ENST00000361198 A0A087X002 238 aa13.24□□□□□ -0.29
LDB1-201ENST00000361198 CDK2AP2O75956 126 aa13.22□□□□□ -0.29
LDB1-201ENST00000361198 PSPHP1O15172 72 aa13.21□□□□□ -0.29
LDB1-201ENST00000361198 CD164Q04900 197 aa13.2□□□□□ -0.3
LDB1-201ENST00000361198 MRPL34Q9BQ48 92 aaKnown RBP13.2□□□□□ -0.3
LDB1-201ENST00000361198 KRTAP13-2Q52LG2 175 aa13.19□□□□□ -0.3
LDB1-201ENST00000361198 SPINK6Q6UWN8 80 aa13.18□□□□□ -0.3
LDB1-201ENST00000361198 NOTCH2NLQ7Z3S9 236 aa13.16□□□□□ -0.3
LDB1-201ENST00000361198 Q8N9P0 234 aaPredicted RBP13.16□□□□□ -0.3
LDB1-201ENST00000361198 C1orf195Q5TG92 126 aa13.15□□□□□ -0.3
LDB1-201ENST00000361198 NDUFS5O43920 106 aa13.14□□□□□ -0.31
LDB1-201ENST00000361198 PCOTHQ58A44 107 aa13.14□□□□□ -0.31
LDB1-201ENST00000361198 A8MUN3 132 aa13.14□□□□□ -0.31
LDB1-201ENST00000361198 KRTAP1-4P0C5Y4 121 aa13.14□□□□□ -0.31
LDB1-201ENST00000361198 COA5Q86WW8 74 aa13.13□□□□□ -0.31
LDB1-201ENST00000361198 LIMD2Q9BT23 127 aa13.11□□□□□ -0.31
LDB1-201ENST00000361198 DYNC1H1Q14204 4646 aaKnown RBP13.11□□□□□ -0.31
LDB1-201ENST00000361198 Q5VV11 94 aa13.09□□□□□ -0.31
LDB1-201ENST00000361198 PLA2G1BP04054 148 aaKnown RBP13.01□□□□□ -0.33
LDB1-201ENST00000361198 KRTAP13-3Q3SY46 172 aa13.01□□□□□ -0.33
LDB1-201ENST00000361198 RYR2Q92736 4967 aa12.99□□□□□ -0.33
LDB1-201ENST00000361198 LOC101927531A0A1B0GV80 90 aa12.99□□□□□ -0.33
LDB1-201ENST00000361198 A0A1B0GVY2 172 aa12.99□□□□□ -0.33
LDB1-201ENST00000361198 Q5W150 140 aa12.98□□□□□ -0.33
LDB1-201ENST00000361198 PRR15LQ9BU68 103 aa12.96□□□□□ -0.33
LDB1-201ENST00000361198 C8orf87E5RJ46 101 aa12.96□□□□□ -0.34
LDB1-201ENST00000361198 KMT2CQ8NEZ4 4911 aaKnown RBP12.95□□□□□ -0.34
LDB1-201ENST00000361198 SMR3BP02814 79 aaPredicted RBP12.95□□□□□ -0.34
LDB1-201ENST00000361198 APOBP04114 4563 aaKnown RBP12.94□□□□□ -0.34
LDB1-201ENST00000361198 FAT1Q14517 4588 aa12.93□□□□□ -0.34
LDB1-201ENST00000361198 HRES1P13985 223 aa12.93□□□□□ -0.34
LDB1-201ENST00000361198 TYMSOSQ8TAI1 123 aa12.92□□□□□ -0.34
LDB1-201ENST00000361198 CHKB-CPT1BH3BT56 60 aa12.92□□□□□ -0.34
LDB1-201ENST00000361198 Q75L30 129 aa12.92□□□□□ -0.34
LDB1-201ENST00000361198 LINC01558Q9Y6Z2 57 aa12.88□□□□□ -0.35
LDB1-201ENST00000361198 LINC00313P59037 77 aa12.88□□□□□ -0.35
LDB1-201ENST00000361198 C4orf48Q5BLP8 95 aa12.86□□□□□ -0.35
LDB1-201ENST00000361198 A8MU10 97 aa12.85□□□□□ -0.35
LDB1-201ENST00000361198 PRR26Q8N8Z3 221 aa12.85□□□□□ -0.35
LDB1-201ENST00000361198 SPAG11AQ6PDA7 123 aa12.83□□□□□ -0.36
LDB1-201ENST00000361198 SPINK1P00995 79 aa12.82□□□□□ -0.36
LDB1-201ENST00000361198 KRTAP10-4P60372 401 aaPredicted RBP12.78□□□□□ -0.36
LDB1-201ENST00000361198 FAM229AH3BQW9 127 aa12.77□□□□□ -0.36
LDB1-201ENST00000361198 LCA10Q71F78 164 aa12.75□□□□□ -0.37
LDB1-201ENST00000361198 LINC00304Q8N9R0 145 aa12.75□□□□□ -0.37
LDB1-201ENST00000361198 A6NED7 52 aa12.74□□□□□ -0.37
LDB1-201ENST00000361198 KRTAP16-1A8MUX0 517 aa12.74□□□□□ -0.37
LDB1-201ENST00000361198 ACYP2P14621 99 aa12.73□□□□□ -0.37
LDB1-201ENST00000361198 PMAIP1Q13794 54 aa12.7□□□□□ -0.38
LDB1-201ENST00000361198 DMAC1Q96GE9 116 aa12.7□□□□□ -0.38
LDB1-201ENST00000361198 IGKV2-30P06310 120 aa12.68□□□□□ -0.38
LDB1-201ENST00000361198 PKHD1L1Q86WI1 4243 aa12.68□□□□□ -0.38
LDB1-201ENST00000361198 RETNLBQ9BQ08 111 aa12.68□□□□□ -0.38
LDB1-201ENST00000361198 RPS29P62273 56 aaKnown RBP12.67□□□□□ -0.38
LDB1-201ENST00000361198 CDC42SE1Q9NRR8 79 aa12.67□□□□□ -0.38
LDB1-201ENST00000361198 ATP11AUNQ6ZP68 121 aa12.66□□□□□ -0.38
LDB1-201ENST00000361198 SPINK7P58062 85 aa12.58□□□□□ -0.4
LDB1-201ENST00000361198 RYR3Q15413 4870 aa12.58□□□□□ -0.4
LDB1-201ENST00000361198 SPTSSBQ8NFR3 76 aa12.57□□□□□ -0.4
LDB1-201ENST00000361198 HSPG2P98160 4391 aa12.48□□□□□ -0.41
LDB1-201ENST00000361198 A6NN06 94 aa12.48□□□□□ -0.41
LDB1-201ENST00000361198 LRP1Q07954 4544 aaKnown RBP12.44□□□□□ -0.42
LDB1-201ENST00000361198 IGKV2D-30A0A075B6S6 120 aa12.44□□□□□ -0.42
LDB1-201ENST00000361198 KTN1-AS1Q86SY8 53 aa12.41□□□□□ -0.42
LDB1-201ENST00000361198 C9orf92A6NGG3 77 aa12.4□□□□□ -0.42
LDB1-201ENST00000361198 FLG2Q5D862 2391 aaPredicted RBP12.39□□□□□ -0.43
LDB1-201ENST00000361198 TNXBP22105 4242 aa12.38□□□□□ -0.43
LDB1-201ENST00000361198 RYR1P21817 5038 aa12.38□□□□□ -0.43
LDB1-201ENST00000361198 A0A1B0GU69 56 aa12.36□□□□□ -0.43
LDB1-201ENST00000361198 Q5VSD8 79 aa12.36□□□□□ -0.43
LDB1-201ENST00000361198 SEC61GP60059 68 aa12.33□□□□□ -0.44
LDB1-201ENST00000361198 C7orf65Q6ZTY9 151 aa12.32□□□□□ -0.44
LDB1-201ENST00000361198 Q8N1X5 172 aa12.32□□□□□ -0.44
LDB1-201ENST00000361198 FAT3Q8TDW7 4589 aa12.3□□□□□ -0.44
LDB1-201ENST00000361198 C20orf166-AS1Q96NR2 134 aa12.3□□□□□ -0.44
LDB1-201ENST00000361198 A8MUU9 505 aa12.28□□□□□ -0.44
LDB1-201ENST00000361198 KRTAP10-8P60410 259 aa12.27□□□□□ -0.45
LDB1-201ENST00000361198 KRTAP17-1Q9BYP8 105 aa12.26□□□□□ -0.45
LDB1-201ENST00000361198 KIAA1109Q2LD37 5005 aa12.24□□□□□ -0.45
LDB1-201ENST00000361198 SPATA8Q6RVD6 105 aa12.23□□□□□ -0.45
LDB1-201ENST00000361198 DMBT1Q9UGM3 2413 aaPredicted RBP12.17□□□□□ -0.46
LDB1-201ENST00000361198 UQCR11O14957 56 aa12.17□□□□□ -0.46
LDB1-201ENST00000361198 MYCBP2O75592 4640 aa12.12□□□□□ -0.47
LDB1-201ENST00000361198 EPPK1P58107 5090 aaKnown RBP12.12□□□□□ -0.47
LDB1-201ENST00000361198 MIR22HGQ0VDD5 57 aa12.12□□□□□ -0.47
LDB1-201ENST00000361198 RBM12B-AS1Q9P1G2 102 aa12.07□□□□□ -0.48
LDB1-201ENST00000361198 MT1HL1P0DM35 61 aa11.99□□□□□ -0.49
LDB1-201ENST00000361198 KRTAP3-1Q9BYR8 98 aa11.96□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 136 ms