RNA–Protein interactions for RNA: ENST00000359984.12

CLN3-205, Transcript of CLN3, battenin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLN3, Length 1,876 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-205ENST00000359984 BPY2O14599 106 aa11.36□□□□□ -0.59
CLN3-205ENST00000359984 ASB16-AS1Q495Z4 193 aa11.36□□□□□ -0.59
CLN3-205ENST00000359984 LINC00472Q9H8W2 130 aa11.36□□□□□ -0.59
CLN3-205ENST00000359984 Q96NJ1 140 aa11.36□□□□□ -0.59
CLN3-205ENST00000359984 IGKV4-1P06312 121 aa11.35□□□□□ -0.59
CLN3-205ENST00000359984 DEFB116Q30KQ4 102 aa11.35□□□□□ -0.59
CLN3-205ENST00000359984 SERP2Q8N6R1 65 aa11.35□□□□□ -0.59
CLN3-205ENST00000359984 Q8N9L7 120 aa11.32□□□□□ -0.6
CLN3-205ENST00000359984 C1orf195Q5TG92 126 aa11.31□□□□□ -0.6
CLN3-205ENST00000359984 DMBT1Q9UGM3 2413 aaPredicted RBP11.31□□□□□ -0.6
CLN3-205ENST00000359984 DSCR10P59022 87 aa11.28□□□□□ -0.6
CLN3-205ENST00000359984 J3QL48 77 aa11.25□□□□□ -0.61
CLN3-205ENST00000359984 TRAV7A0A075B6U4 112 aa11.22□□□□□ -0.61
CLN3-205ENST00000359984 RETNLBQ9BQ08 111 aa11.22□□□□□ -0.61
CLN3-205ENST00000359984 PCLOQ9Y6V0 5065 aa11.19□□□□□ -0.62
CLN3-205ENST00000359984 A8MWP4 228 aa11.19□□□□□ -0.62
CLN3-205ENST00000359984 K7EQZ3 153 aa11.19□□□□□ -0.62
CLN3-205ENST00000359984 TMEM258P61165 79 aa11.17□□□□□ -0.62
CLN3-205ENST00000359984 CYSTM1Q9H1C7 97 aa11.17□□□□□ -0.62
CLN3-205ENST00000359984 PRR15Q8IV56 129 aa11.15□□□□□ -0.63
CLN3-205ENST00000359984 NDUFB1O75438 58 aa11.14□□□□□ -0.63
CLN3-205ENST00000359984 OCR1Q9BZK8 76 aa11.13□□□□□ -0.63
CLN3-205ENST00000359984 A0A1B0GVX0 72 aa11.12□□□□□ -0.63
CLN3-205ENST00000359984 PRO0628Q9UI54 55 aa11.12□□□□□ -0.63
CLN3-205ENST00000359984 IGHV6-1A0A0B4J1U7 121 aa11.1□□□□□ -0.63
CLN3-205ENST00000359984 C20orf197Q8N268 126 aa11.08□□□□□ -0.64
CLN3-205ENST00000359984 HCG22E2RYF7 251 aa11.07□□□□□ -0.64
CLN3-205ENST00000359984 C4orf26Q17RF5 130 aa11.07□□□□□ -0.64
CLN3-205ENST00000359984 FP248Q71RG6 208 aaPredicted RBP11.07□□□□□ -0.64
CLN3-205ENST00000359984 NOTCH2NLQ7Z3S9 236 aa11.06□□□□□ -0.64
CLN3-205ENST00000359984 KLKP1Q107X0 134 aa11.05□□□□□ -0.64
CLN3-205ENST00000359984 C8orf17Q9NRJ1 99 aa11.04□□□□□ -0.64
CLN3-205ENST00000359984 PRR4Q16378 134 aa11.02□□□□□ -0.64
CLN3-205ENST00000359984 IGLV7-46A0A075B6I9 117 aa11.02□□□□□ -0.65
CLN3-205ENST00000359984 MMP24-AS1A0A0U1RRL7 71 aa11.02□□□□□ -0.65
CLN3-205ENST00000359984 C8orf87E5RJ46 101 aa11.01□□□□□ -0.65
CLN3-205ENST00000359984 LINC00313P59037 77 aa11□□□□□ -0.65
CLN3-205ENST00000359984 SEC61GP60059 68 aa11□□□□□ -0.65
CLN3-205ENST00000359984 WFDC13Q8IUB5 93 aa10.98□□□□□ -0.65
CLN3-205ENST00000359984 SNURFQ9Y675 71 aa10.98□□□□□ -0.65
CLN3-205ENST00000359984 TMEM254Q8TBM7 123 aa10.97□□□□□ -0.65
CLN3-205ENST00000359984 C9orf92A6NGG3 77 aa10.96□□□□□ -0.65
CLN3-205ENST00000359984 H7BZZ5 65 aa10.96□□□□□ -0.65
CLN3-205ENST00000359984 CASC2Q6XLA1 102 aa10.95□□□□□ -0.66
CLN3-205ENST00000359984 hDV103S1A0JD37 113 aa10.95□□□□□ -0.66
CLN3-205ENST00000359984 A0A0U1RQV1 116 aa10.94□□□□□ -0.66
CLN3-205ENST00000359984 KRTAP16-1A8MUX0 517 aa10.92□□□□□ -0.66
CLN3-205ENST00000359984 KRTAP13-3Q3SY46 172 aa10.91□□□□□ -0.66
CLN3-205ENST00000359984 V9GYY9 64 aa10.91□□□□□ -0.66
CLN3-205ENST00000359984 NDUFC1O43677 76 aa10.88□□□□□ -0.67
CLN3-205ENST00000359984 MRPL34Q9BQ48 92 aaKnown RBP10.88□□□□□ -0.67
CLN3-205ENST00000359984 HERC1Q15751 4861 aa10.87□□□□□ -0.67
CLN3-205ENST00000359984 TPRXLQ17RH7 258 aa10.85□□□□□ -0.67
CLN3-205ENST00000359984 ZCCHC13Q8WW36 166 aaKnown RBP10.85□□□□□ -0.67
CLN3-205ENST00000359984 SERP1Q9Y6X1 66 aa10.85□□□□□ -0.67
CLN3-205ENST00000359984 Q8N9P0 234 aaPredicted RBP10.82□□□□□ -0.68
CLN3-205ENST00000359984 FAM236DA0A1B0GTK5 79 aa10.81□□□□□ -0.68
CLN3-205ENST00000359984 FAM236CP0DP71 79 aa10.81□□□□□ -0.68
CLN3-205ENST00000359984 NDUFS5O43920 106 aa10.79□□□□□ -0.68
CLN3-205ENST00000359984 C20orf166-AS1Q96NR2 134 aa10.78□□□□□ -0.68
CLN3-205ENST00000359984 XP32Q5T750 250 aa10.78□□□□□ -0.68
CLN3-205ENST00000359984 A8MUU9 505 aa10.76□□□□□ -0.69
CLN3-205ENST00000359984 SMIM26A0A096LP01 95 aa10.76□□□□□ -0.69
CLN3-205ENST00000359984 LPAP08519 4548 aa10.75□□□□□ -0.69
CLN3-205ENST00000359984 MP68P56378 58 aa10.72□□□□□ -0.69
CLN3-205ENST00000359984 Q75L30 129 aa10.72□□□□□ -0.69
CLN3-205ENST00000359984 H0Y9P7 68 aa10.71□□□□□ -0.69
CLN3-205ENST00000359984 H3BPC8 53 aa10.7□□□□□ -0.7
CLN3-205ENST00000359984 ATP5EP56381 51 aaPredicted RBP10.7□□□□□ -0.7
CLN3-205ENST00000359984 TP53AIP1Q9HCN2 124 aa10.7□□□□□ -0.7
CLN3-205ENST00000359984 HMCN2Q8NDA2 5059 aa10.69□□□□□ -0.7
CLN3-205ENST00000359984 RPL37P61927 97 aaKnown RBP10.68□□□□□ -0.7
CLN3-205ENST00000359984 LINC00208Q96KT6 92 aa10.68□□□□□ -0.7
CLN3-205ENST00000359984 TRAV22A0A0B4J277 110 aa10.66□□□□□ -0.7
CLN3-205ENST00000359984 Q5W150 140 aa10.65□□□□□ -0.7
CLN3-205ENST00000359984 LRP2P98164 4655 aa10.64□□□□□ -0.71
CLN3-205ENST00000359984 C1orf64Q8NEQ6 169 aa10.61□□□□□ -0.71
CLN3-205ENST00000359984 ATP11AUNQ6ZP68 121 aa10.59□□□□□ -0.71
CLN3-205ENST00000359984 BRK1Q8WUW1 75 aa10.56□□□□□ -0.72
CLN3-205ENST00000359984 PCOTHQ58A44 107 aa10.53□□□□□ -0.72
CLN3-205ENST00000359984 CYP4F30PQ9H0H9 118 aa10.53□□□□□ -0.72
CLN3-205ENST00000359984 SPANXA2-OT1Q8N9U9 137 aa10.51□□□□□ -0.73
CLN3-205ENST00000359984 PMAIP1Q13794 54 aa10.5□□□□□ -0.73
CLN3-205ENST00000359984 SEC61BP60468 96 aaKnown RBP10.48□□□□□ -0.73
CLN3-205ENST00000359984 IGKV2-30P06310 120 aa10.43□□□□□ -0.74
CLN3-205ENST00000359984 IGKV2D-30A0A075B6S6 120 aa10.42□□□□□ -0.74
CLN3-205ENST00000359984 LOC101927531A0A1B0GV80 90 aa10.42□□□□□ -0.74
CLN3-205ENST00000359984 SPINK7P58062 85 aa10.39□□□□□ -0.75
CLN3-205ENST00000359984 MUC17Q685J3 4493 aa10.39□□□□□ -0.75
CLN3-205ENST00000359984 C7orf65Q6ZTY9 151 aa10.37□□□□□ -0.75
CLN3-205ENST00000359984 KRTAP4-1Q9BYQ7 146 aa10.32□□□□□ -0.76
CLN3-205ENST00000359984 UBR4Q5T4S7 5183 aa10.24□□□□□ -0.77
CLN3-205ENST00000359984 MPLKIPQ8TAP9 179 aa10.23□□□□□ -0.77
CLN3-205ENST00000359984 Q1T7F1 81 aa10.23□□□□□ -0.77
CLN3-205ENST00000359984 HRES1P13985 223 aa10.22□□□□□ -0.77
CLN3-205ENST00000359984 COA5Q86WW8 74 aa10.21□□□□□ -0.78
CLN3-205ENST00000359984 MUC2Q02817 5179 aa10.14□□□□□ -0.79
CLN3-205ENST00000359984 RNF213Q63HN8 5207 aa10.13□□□□□ -0.79
CLN3-205ENST00000359984 DMAC1Q96GE9 116 aa10.12□□□□□ -0.79
CLN3-205ENST00000359984 KTN1-AS1Q86SY8 53 aa10.08□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 64.9 ms