RNA–Protein interactions for RNA: ENST00000350028.4

SAMM50-201, Transcript of SAMM50 sorting and assembly machinery component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SAMM50, Length 1,717 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SAMM50-201ENST00000350028 LRP1BQ9NZR2 4599 aa9.76□□□□□ -0.85
SAMM50-201ENST00000350028 OXTP01178 125 aa9.76□□□□□ -0.85
SAMM50-201ENST00000350028 H0Y9P7 68 aa9.75□□□□□ -0.85
SAMM50-201ENST00000350028 TP53AIP1Q9HCN2 124 aa9.74□□□□□ -0.85
SAMM50-201ENST00000350028 KRTAP1-4P0C5Y4 121 aa9.73□□□□□ -0.85
SAMM50-201ENST00000350028 LINC00208Q96KT6 92 aa9.73□□□□□ -0.85
SAMM50-201ENST00000350028 Q5XG85 94 aa9.72□□□□□ -0.85
SAMM50-201ENST00000350028 SPINK6Q6UWN8 80 aa9.72□□□□□ -0.85
SAMM50-201ENST00000350028 MRPL34Q9BQ48 92 aaKnown RBP9.7□□□□□ -0.86
SAMM50-201ENST00000350028 TRAV22A0A0B4J277 110 aa9.7□□□□□ -0.86
SAMM50-201ENST00000350028 EPPK1P58107 5090 aaKnown RBP9.69□□□□□ -0.86
SAMM50-201ENST00000350028 C8orf87E5RJ46 101 aa9.67□□□□□ -0.86
SAMM50-201ENST00000350028 PLA2G1BP04054 148 aaKnown RBP9.66□□□□□ -0.86
SAMM50-201ENST00000350028 NOTCH2NLQ7Z3S9 236 aa9.66□□□□□ -0.86
SAMM50-201ENST00000350028 C1orf64Q8NEQ6 169 aa9.66□□□□□ -0.86
SAMM50-201ENST00000350028 APOBP04114 4563 aaKnown RBP9.65□□□□□ -0.86
SAMM50-201ENST00000350028 NDUFS5O43920 106 aa9.65□□□□□ -0.87
SAMM50-201ENST00000350028 LIMD2Q9BT23 127 aa9.65□□□□□ -0.87
SAMM50-201ENST00000350028 C4orf48Q5BLP8 95 aa9.63□□□□□ -0.87
SAMM50-201ENST00000350028 C1orf195Q5TG92 126 aa9.63□□□□□ -0.87
SAMM50-201ENST00000350028 TYMSOSQ8TAI1 123 aa9.62□□□□□ -0.87
SAMM50-201ENST00000350028 SMIM26A0A096LP01 95 aa9.62□□□□□ -0.87
SAMM50-201ENST00000350028 CYP4F30PQ9H0H9 118 aa9.62□□□□□ -0.87
SAMM50-201ENST00000350028 SPANXA2-OT1Q8N9U9 137 aa9.59□□□□□ -0.87
SAMM50-201ENST00000350028 SPINK1P00995 79 aa9.57□□□□□ -0.88
SAMM50-201ENST00000350028 LINC00313P59037 77 aa9.57□□□□□ -0.88
SAMM50-201ENST00000350028 SMR3BP02814 79 aaPredicted RBP9.56□□□□□ -0.88
SAMM50-201ENST00000350028 VPS13BQ7Z7G8 4022 aa9.53□□□□□ -0.88
SAMM50-201ENST00000350028 RPS29P62273 56 aaKnown RBP9.51□□□□□ -0.89
SAMM50-201ENST00000350028 PRR4Q16378 134 aa9.51□□□□□ -0.89
SAMM50-201ENST00000350028 SPAG11AQ6PDA7 123 aa9.51□□□□□ -0.89
SAMM50-201ENST00000350028 PRR26Q8N8Z3 221 aa9.51□□□□□ -0.89
SAMM50-201ENST00000350028 FAT1Q14517 4588 aa9.51□□□□□ -0.89
SAMM50-201ENST00000350028 FP248Q71RG6 208 aaPredicted RBP9.5□□□□□ -0.89
SAMM50-201ENST00000350028 LINC00304Q8N9R0 145 aa9.5□□□□□ -0.89
SAMM50-201ENST00000350028 HSPG2P98160 4391 aa9.5□□□□□ -0.89
SAMM50-201ENST00000350028 KRTAP10-4P60372 401 aaPredicted RBP9.49□□□□□ -0.89
SAMM50-201ENST00000350028 KIAA1109Q2LD37 5005 aa9.49□□□□□ -0.89
SAMM50-201ENST00000350028 Q8N9P0 234 aaPredicted RBP9.48□□□□□ -0.89
SAMM50-201ENST00000350028 IGLV7-46A0A075B6I9 117 aa9.48□□□□□ -0.89
SAMM50-201ENST00000350028 LOC101927531A0A1B0GV80 90 aa9.48□□□□□ -0.89
SAMM50-201ENST00000350028 KRTAP13-3Q3SY46 172 aa9.48□□□□□ -0.89
SAMM50-201ENST00000350028 RYR1P21817 5038 aa9.47□□□□□ -0.89
SAMM50-201ENST00000350028 C4orf26Q17RF5 130 aa9.47□□□□□ -0.89
SAMM50-201ENST00000350028 PCOTHQ58A44 107 aa9.46□□□□□ -0.89
SAMM50-201ENST00000350028 Q5W150 140 aa9.46□□□□□ -0.89
SAMM50-201ENST00000350028 KRTAP16-1A8MUX0 517 aa9.44□□□□□ -0.9
SAMM50-201ENST00000350028 FAM229AH3BQW9 127 aa9.44□□□□□ -0.9
SAMM50-201ENST00000350028 KRTAP17-1Q9BYP8 105 aa9.39□□□□□ -0.91
SAMM50-201ENST00000350028 MPLKIPQ8TAP9 179 aa9.36□□□□□ -0.91
SAMM50-201ENST00000350028 BIRC6Q9NR09 4857 aa9.35□□□□□ -0.91
SAMM50-201ENST00000350028 Q1T7F1 81 aa9.33□□□□□ -0.92
SAMM50-201ENST00000350028 COA5Q86WW8 74 aa9.31□□□□□ -0.92
SAMM50-201ENST00000350028 IGKV2-30P06310 120 aa9.31□□□□□ -0.92
SAMM50-201ENST00000350028 RETNLBQ9BQ08 111 aa9.31□□□□□ -0.92
SAMM50-201ENST00000350028 V9GYY9 64 aa9.28□□□□□ -0.92
SAMM50-201ENST00000350028 PKHD1L1Q86WI1 4243 aa9.24□□□□□ -0.93
SAMM50-201ENST00000350028 HRES1P13985 223 aa9.24□□□□□ -0.93
SAMM50-201ENST00000350028 Q5VSD8 79 aa9.21□□□□□ -0.94
SAMM50-201ENST00000350028 HERC2O95714 4834 aa9.21□□□□□ -0.94
SAMM50-201ENST00000350028 ACYP2P14621 99 aa9.19□□□□□ -0.94
SAMM50-201ENST00000350028 IGKV2D-30A0A075B6S6 120 aa9.17□□□□□ -0.94
SAMM50-201ENST00000350028 KRTAP10-8P60410 259 aa9.17□□□□□ -0.94
SAMM50-201ENST00000350028 DMAC1Q96GE9 116 aa9.17□□□□□ -0.94
SAMM50-201ENST00000350028 A8MUU9 505 aa9.16□□□□□ -0.94
SAMM50-201ENST00000350028 Q8N1X5 172 aa9.16□□□□□ -0.94
SAMM50-201ENST00000350028 C20orf166-AS1Q96NR2 134 aa9.16□□□□□ -0.94
SAMM50-201ENST00000350028 C9orf92A6NGG3 77 aa9.14□□□□□ -0.95
SAMM50-201ENST00000350028 KRTAP4-5Q9BYR2 181 aa9.14□□□□□ -0.95
SAMM50-201ENST00000350028 LRP1Q07954 4544 aaKnown RBP9.14□□□□□ -0.95
SAMM50-201ENST00000350028 PSPHP1O15172 72 aa9.12□□□□□ -0.95
SAMM50-201ENST00000350028 C7orf65Q6ZTY9 151 aa9.11□□□□□ -0.95
SAMM50-201ENST00000350028 ABCA13Q86UQ4 5058 aa9.11□□□□□ -0.95
SAMM50-201ENST00000350028 MYCBP2O75592 4640 aa9.11□□□□□ -0.95
SAMM50-201ENST00000350028 A8MUN3 132 aa9.1□□□□□ -0.95
SAMM50-201ENST00000350028 FAT3Q8TDW7 4589 aa9.09□□□□□ -0.95
SAMM50-201ENST00000350028 LINC01558Q9Y6Z2 57 aa9.08□□□□□ -0.96
SAMM50-201ENST00000350028 CHKB-CPT1BH3BT56 60 aa9.05□□□□□ -0.96
SAMM50-201ENST00000350028 PRR15LQ9BU68 103 aa9.05□□□□□ -0.96
SAMM50-201ENST00000350028 FLG2Q5D862 2391 aaPredicted RBP9.05□□□□□ -0.96
SAMM50-201ENST00000350028 Q5VV11 94 aa9.05□□□□□ -0.96
SAMM50-201ENST00000350028 PRO0628Q9UI54 55 aa9.05□□□□□ -0.96
SAMM50-201ENST00000350028 BRK1Q8WUW1 75 aa9.04□□□□□ -0.96
SAMM50-201ENST00000350028 Q75L30 129 aa9.02□□□□□ -0.97
SAMM50-201ENST00000350028 TNXBP22105 4242 aa9.01□□□□□ -0.97
SAMM50-201ENST00000350028 PCLOQ9Y6V0 5065 aa8.93□□□□□ -0.98
SAMM50-201ENST00000350028 MT1HL1P0DM35 61 aa8.91□□□□□ -0.98
SAMM50-201ENST00000350028 SPINK7P58062 85 aa8.91□□□□□ -0.98
SAMM50-201ENST00000350028 ATP11AUNQ6ZP68 121 aa8.87□□□□□ -0.99
SAMM50-201ENST00000350028 A6NED7 52 aa8.85□□□□□ -0.99
SAMM50-201ENST00000350028 RPL37P61927 97 aaKnown RBP8.85□□□□□ -0.99
SAMM50-201ENST00000350028 XP32Q5T750 250 aa8.82□□□□□ -1
SAMM50-201ENST00000350028 A0A1B0GU69 56 aa8.8□□□□□ -1
SAMM50-201ENST00000350028 SPTSSBQ8NFR3 76 aa8.8□□□□□ -1
SAMM50-201ENST00000350028 KRTAP3-1Q9BYR8 98 aa8.79□□□□□ -1
SAMM50-201ENST00000350028 DMBT1Q9UGM3 2413 aaPredicted RBP8.78□□□□□ -1
SAMM50-201ENST00000350028 COX6B2Q6YFQ2 88 aa8.77□□□□□ -1.01
SAMM50-201ENST00000350028 LCA10Q71F78 164 aa8.76□□□□□ -1.01
SAMM50-201ENST00000350028 CDC42SE1Q9NRR8 79 aa8.76□□□□□ -1.01
SAMM50-201ENST00000350028 A8MU10 97 aa8.72□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 69.4 ms