RNA–Protein interactions for RNA: ENST00000338045.7

LIMS1-202, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 1 (best) BASIC

Gene LIMS1, Length 1,876 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-202ENST00000338045 Q1T7F1 81 aa9.09□□□□□ -0.95
LIMS1-202ENST00000338045 MPLKIPQ8TAP9 179 aa9.08□□□□□ -0.96
LIMS1-202ENST00000338045 HSPG2P98160 4391 aa9.08□□□□□ -0.96
LIMS1-202ENST00000338045 PLA2G1BP04054 148 aaKnown RBP9.07□□□□□ -0.96
LIMS1-202ENST00000338045 PRR26Q8N8Z3 221 aa9.07□□□□□ -0.96
LIMS1-202ENST00000338045 LINC00472Q9H8W2 130 aa9.06□□□□□ -0.96
LIMS1-202ENST00000338045 DSCR10P59022 87 aa9.05□□□□□ -0.96
LIMS1-202ENST00000338045 IGKV4-1P06312 121 aa9.04□□□□□ -0.96
LIMS1-202ENST00000338045 RYR1P21817 5038 aa9.03□□□□□ -0.96
LIMS1-202ENST00000338045 Q8N9L7 120 aa9.03□□□□□ -0.96
LIMS1-202ENST00000338045 FAM229AH3BQW9 127 aa9.02□□□□□ -0.96
LIMS1-202ENST00000338045 DEFB116Q30KQ4 102 aa9.01□□□□□ -0.97
LIMS1-202ENST00000338045 Q96NJ1 140 aa9.01□□□□□ -0.97
LIMS1-202ENST00000338045 K7EQZ3 153 aa8.98□□□□□ -0.97
LIMS1-202ENST00000338045 LCA10Q71F78 164 aa8.98□□□□□ -0.97
LIMS1-202ENST00000338045 TYMSOSQ8TAI1 123 aa8.98□□□□□ -0.97
LIMS1-202ENST00000338045 PKHD1L1Q86WI1 4243 aa8.98□□□□□ -0.97
LIMS1-202ENST00000338045 EPPK1P58107 5090 aaKnown RBP8.98□□□□□ -0.97
LIMS1-202ENST00000338045 Q5VSD8 79 aa8.97□□□□□ -0.97
LIMS1-202ENST00000338045 ASB16-AS1Q495Z4 193 aa8.96□□□□□ -0.97
LIMS1-202ENST00000338045 A8MWP4 228 aa8.95□□□□□ -0.98
LIMS1-202ENST00000338045 KIAA1109Q2LD37 5005 aa8.94□□□□□ -0.98
LIMS1-202ENST00000338045 SNURFQ9Y675 71 aa8.94□□□□□ -0.98
LIMS1-202ENST00000338045 C7orf65Q6ZTY9 151 aa8.93□□□□□ -0.98
LIMS1-202ENST00000338045 ATP11AUNQ6ZP68 121 aa8.91□□□□□ -0.98
LIMS1-202ENST00000338045 KRTAP17-1Q9BYP8 105 aa8.91□□□□□ -0.98
LIMS1-202ENST00000338045 SPINK1P00995 79 aa8.9□□□□□ -0.98
LIMS1-202ENST00000338045 hDV103S1A0JD37 113 aa8.89□□□□□ -0.99
LIMS1-202ENST00000338045 A8MUN3 132 aa8.89□□□□□ -0.99
LIMS1-202ENST00000338045 LIMD2Q9BT23 127 aa8.89□□□□□ -0.99
LIMS1-202ENST00000338045 SPAG11AQ6PDA7 123 aa8.88□□□□□ -0.99
LIMS1-202ENST00000338045 LINC00304Q8N9R0 145 aa8.88□□□□□ -0.99
LIMS1-202ENST00000338045 HCG22E2RYF7 251 aa8.87□□□□□ -0.99
LIMS1-202ENST00000338045 NDUFB1O75438 58 aa8.87□□□□□ -0.99
LIMS1-202ENST00000338045 RPS29P62273 56 aaKnown RBP8.87□□□□□ -0.99
LIMS1-202ENST00000338045 Q8N1X5 172 aa8.87□□□□□ -0.99
LIMS1-202ENST00000338045 A6NN06 94 aa8.87□□□□□ -0.99
LIMS1-202ENST00000338045 TMEM254Q8TBM7 123 aa8.85□□□□□ -0.99
LIMS1-202ENST00000338045 A0A1B0GVX0 72 aa8.83□□□□□ -1
LIMS1-202ENST00000338045 KRTAP29-1A8MX34 341 aaPredicted RBP8.83□□□□□ -1
LIMS1-202ENST00000338045 TRAV22A0A0B4J277 110 aa8.82□□□□□ -1
LIMS1-202ENST00000338045 MMP24-AS1A0A0U1RRL7 71 aa8.81□□□□□ -1
LIMS1-202ENST00000338045 WFDC13Q8IUB5 93 aa8.8□□□□□ -1
LIMS1-202ENST00000338045 OCR1Q9BZK8 76 aa8.8□□□□□ -1
LIMS1-202ENST00000338045 LRP1Q07954 4544 aaKnown RBP8.8□□□□□ -1
LIMS1-202ENST00000338045 CASC2Q6XLA1 102 aa8.79□□□□□ -1
LIMS1-202ENST00000338045 C8orf17Q9NRJ1 99 aa8.79□□□□□ -1
LIMS1-202ENST00000338045 IGHV6-1A0A0B4J1U7 121 aa8.79□□□□□ -1
LIMS1-202ENST00000338045 KRTAP10-8P60410 259 aa8.79□□□□□ -1
LIMS1-202ENST00000338045 FAT3Q8TDW7 4589 aa8.77□□□□□ -1.01
LIMS1-202ENST00000338045 TNXBP22105 4242 aa8.77□□□□□ -1.01
LIMS1-202ENST00000338045 CYP4F30PQ9H0H9 118 aa8.77□□□□□ -1.01
LIMS1-202ENST00000338045 NOTCH2NLQ7Z3S9 236 aa8.75□□□□□ -1.01
LIMS1-202ENST00000338045 PSPHP1O15172 72 aa8.74□□□□□ -1.01
LIMS1-202ENST00000338045 Q5VV11 94 aa8.72□□□□□ -1.01
LIMS1-202ENST00000338045 LINC01554Q52M75 96 aa8.69□□□□□ -1.02
LIMS1-202ENST00000338045 FLG2Q5D862 2391 aaPredicted RBP8.68□□□□□ -1.02
LIMS1-202ENST00000338045 MP68P56378 58 aa8.68□□□□□ -1.02
LIMS1-202ENST00000338045 MRPL34Q9BQ48 92 aaKnown RBP8.68□□□□□ -1.02
LIMS1-202ENST00000338045 LINC00313P59037 77 aa8.68□□□□□ -1.02
LIMS1-202ENST00000338045 C1orf64Q8NEQ6 169 aa8.68□□□□□ -1.02
LIMS1-202ENST00000338045 SPTSSBQ8NFR3 76 aa8.67□□□□□ -1.02
LIMS1-202ENST00000338045 MT1HL1P0DM35 61 aa8.66□□□□□ -1.02
LIMS1-202ENST00000338045 MYCBP2O75592 4640 aa8.66□□□□□ -1.02
LIMS1-202ENST00000338045 BIRC6Q9NR09 4857 aa8.65□□□□□ -1.02
LIMS1-202ENST00000338045 KRTAP4-5Q9BYR2 181 aa8.65□□□□□ -1.02
LIMS1-202ENST00000338045 CHKB-CPT1BH3BT56 60 aa8.64□□□□□ -1.03
LIMS1-202ENST00000338045 Q75L30 129 aa8.64□□□□□ -1.03
LIMS1-202ENST00000338045 CDC42SE1Q9NRR8 79 aa8.64□□□□□ -1.03
LIMS1-202ENST00000338045 KRTAP16-1A8MUX0 517 aa8.62□□□□□ -1.03
LIMS1-202ENST00000338045 TP53AIP1Q9HCN2 124 aa8.62□□□□□ -1.03
LIMS1-202ENST00000338045 Q8N9P0 234 aaPredicted RBP8.6□□□□□ -1.03
LIMS1-202ENST00000338045 A8MU10 97 aa8.59□□□□□ -1.03
LIMS1-202ENST00000338045 LCE2DQ5TA82 110 aaPredicted RBP8.59□□□□□ -1.03
LIMS1-202ENST00000338045 RETNLBQ9BQ08 111 aa8.59□□□□□ -1.03
LIMS1-202ENST00000338045 HERC2O95714 4834 aa8.57□□□□□ -1.04
LIMS1-202ENST00000338045 DMBT1Q9UGM3 2413 aaPredicted RBP8.56□□□□□ -1.04
LIMS1-202ENST00000338045 ZCCHC13Q8WW36 166 aaKnown RBP8.55□□□□□ -1.04
LIMS1-202ENST00000338045 LOC101927531A0A1B0GV80 90 aa8.54□□□□□ -1.04
LIMS1-202ENST00000338045 H0Y9P7 68 aa8.54□□□□□ -1.04
LIMS1-202ENST00000338045 H3BPC8 53 aa8.53□□□□□ -1.04
LIMS1-202ENST00000338045 A6NED7 52 aa8.52□□□□□ -1.05
LIMS1-202ENST00000338045 KRTAP13-3Q3SY46 172 aa8.5□□□□□ -1.05
LIMS1-202ENST00000338045 LINC00208Q96KT6 92 aa8.49□□□□□ -1.05
LIMS1-202ENST00000338045 PRR15LQ9BU68 103 aa8.49□□□□□ -1.05
LIMS1-202ENST00000338045 ABCA13Q86UQ4 5058 aa8.49□□□□□ -1.05
LIMS1-202ENST00000338045 Q5W150 140 aa8.49□□□□□ -1.05
LIMS1-202ENST00000338045 A0A0A0MQY5 61 aa8.48□□□□□ -1.05
LIMS1-202ENST00000338045 C9orf92A6NGG3 77 aa8.47□□□□□ -1.05
LIMS1-202ENST00000338045 C20orf166-AS1Q96NR2 134 aa8.45□□□□□ -1.06
LIMS1-202ENST00000338045 A8MUU9 505 aa8.43□□□□□ -1.06
LIMS1-202ENST00000338045 IGLV7-46A0A075B6I9 117 aa8.43□□□□□ -1.06
LIMS1-202ENST00000338045 SPANXA2-OT1Q8N9U9 137 aa8.4□□□□□ -1.07
LIMS1-202ENST00000338045 J3QL48 77 aa8.34□□□□□ -1.07
LIMS1-202ENST00000338045 IGKV2-30P06310 120 aa8.34□□□□□ -1.07
LIMS1-202ENST00000338045 PRR4Q16378 134 aa8.34□□□□□ -1.07
LIMS1-202ENST00000338045 PRAC1Q96KF2 57 aa8.32□□□□□ -1.08
LIMS1-202ENST00000338045 XP32Q5T750 250 aa8.3□□□□□ -1.08
LIMS1-202ENST00000338045 TPRXLQ17RH7 258 aa8.3□□□□□ -1.08
LIMS1-202ENST00000338045 PCOTHQ58A44 107 aa8.3□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 134.7 ms