RNA–Protein interactions for RNA: ENST00000333496.14

CLN3-201, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,608 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-201ENST00000333496 MUC17Q685J3 4493 aa8.86□□□□□ -0.99
CLN3-201ENST00000333496 KRTAP13-3Q3SY46 172 aa8.86□□□□□ -0.99
CLN3-201ENST00000333496 A0A0G2JQZ4 141 aa8.85□□□□□ -0.99
CLN3-201ENST00000333496 SMIM20Q8N5G0 67 aa8.84□□□□□ -0.99
CLN3-201ENST00000333496 CD164Q04900 197 aa8.83□□□□□ -1
CLN3-201ENST00000333496 A0A1B0GW54 56 aa8.83□□□□□ -1
CLN3-201ENST00000333496 LIMD2Q9BT23 127 aa8.81□□□□□ -1
CLN3-201ENST00000333496 TMEM258P61165 79 aa8.8□□□□□ -1
CLN3-201ENST00000333496 TRAV7A0A075B6U4 112 aa8.77□□□□□ -1.01
CLN3-201ENST00000333496 F8WEM9 126 aa8.77□□□□□ -1.01
CLN3-201ENST00000333496 Q5XG85 94 aa8.76□□□□□ -1.01
CLN3-201ENST00000333496 IGLV8-61A0A075B6I0 122 aa8.75□□□□□ -1.01
CLN3-201ENST00000333496 NREPQ16612 68 aa8.74□□□□□ -1.01
CLN3-201ENST00000333496 J3KT08 172 aa8.72□□□□□ -1.01
CLN3-201ENST00000333496 IGFL1Q6UW32 110 aa8.72□□□□□ -1.01
CLN3-201ENST00000333496 C1orf195Q5TG92 126 aa8.71□□□□□ -1.02
CLN3-201ENST00000333496 CYSTM1Q9H1C7 97 aa8.71□□□□□ -1.02
CLN3-201ENST00000333496 RPS28P62857 69 aaKnown RBP8.7□□□□□ -1.02
CLN3-201ENST00000333496 XP32Q5T750 250 aa8.7□□□□□ -1.02
CLN3-201ENST00000333496 BPY2O14599 106 aa8.69□□□□□ -1.02
CLN3-201ENST00000333496 ASB16-AS1Q495Z4 193 aa8.69□□□□□ -1.02
CLN3-201ENST00000333496 C20orf197Q8N268 126 aa8.69□□□□□ -1.02
CLN3-201ENST00000333496 IGKV4-1P06312 121 aa8.68□□□□□ -1.02
CLN3-201ENST00000333496 KLKP1Q107X0 134 aa8.68□□□□□ -1.02
CLN3-201ENST00000333496 A0A1W2PNM2 257 aa8.67□□□□□ -1.02
CLN3-201ENST00000333496 C9orf92A6NGG3 77 aa8.65□□□□□ -1.02
CLN3-201ENST00000333496 SEC61BP60468 96 aaKnown RBP8.64□□□□□ -1.03
CLN3-201ENST00000333496 KRTAP4-1Q9BYQ7 146 aa8.64□□□□□ -1.03
CLN3-201ENST00000333496 NDUFC1O43677 76 aa8.62□□□□□ -1.03
CLN3-201ENST00000333496 A0A0U1RQV1 116 aa8.62□□□□□ -1.03
CLN3-201ENST00000333496 FAM236DA0A1B0GTK5 79 aa8.61□□□□□ -1.03
CLN3-201ENST00000333496 FAM236CP0DP71 79 aa8.61□□□□□ -1.03
CLN3-201ENST00000333496 FAT4Q6V0I7 4981 aa8.59□□□□□ -1.03
CLN3-201ENST00000333496 H7BZZ5 65 aa8.59□□□□□ -1.03
CLN3-201ENST00000333496 Q8N9L7 120 aa8.59□□□□□ -1.03
CLN3-201ENST00000333496 ATP5EP56381 51 aaPredicted RBP8.57□□□□□ -1.04
CLN3-201ENST00000333496 OCR1Q9BZK8 76 aa8.57□□□□□ -1.04
CLN3-201ENST00000333496 SVIPQ8NHG7 77 aa8.56□□□□□ -1.04
CLN3-201ENST00000333496 A0A087WSZ3 146 aa8.54□□□□□ -1.04
CLN3-201ENST00000333496 TMEM254Q8TBM7 123 aa8.54□□□□□ -1.04
CLN3-201ENST00000333496 LCE2AQ5TA79 106 aaPredicted RBP8.54□□□□□ -1.04
CLN3-201ENST00000333496 SNURFQ9Y675 71 aa8.54□□□□□ -1.04
CLN3-201ENST00000333496 PCOTHQ58A44 107 aa8.53□□□□□ -1.04
CLN3-201ENST00000333496 SERP1Q9Y6X1 66 aa8.52□□□□□ -1.05
CLN3-201ENST00000333496 DSCR10P59022 87 aa8.51□□□□□ -1.05
CLN3-201ENST00000333496 K7EQZ3 153 aa8.48□□□□□ -1.05
CLN3-201ENST00000333496 RPL37P61927 97 aaKnown RBP8.48□□□□□ -1.05
CLN3-201ENST00000333496 Q96NJ1 140 aa8.48□□□□□ -1.05
CLN3-201ENST00000333496 HCG22E2RYF7 251 aa8.47□□□□□ -1.05
CLN3-201ENST00000333496 LINC00472Q9H8W2 130 aa8.42□□□□□ -1.06
CLN3-201ENST00000333496 DEFB116Q30KQ4 102 aa8.4□□□□□ -1.06
CLN3-201ENST00000333496 KRTAP19-2Q3LHN2 52 aa8.4□□□□□ -1.07
CLN3-201ENST00000333496 C5orf47Q569G3 176 aa8.4□□□□□ -1.07
CLN3-201ENST00000333496 LCE2CQ5TA81 110 aa8.38□□□□□ -1.07
CLN3-201ENST00000333496 Q75L30 129 aa8.37□□□□□ -1.07
CLN3-201ENST00000333496 SMIM26A0A096LP01 95 aa8.36□□□□□ -1.07
CLN3-201ENST00000333496 A8MWP4 228 aa8.36□□□□□ -1.07
CLN3-201ENST00000333496 ZCCHC13Q8WW36 166 aaKnown RBP8.36□□□□□ -1.07
CLN3-201ENST00000333496 PRR15Q8IV56 129 aa8.35□□□□□ -1.07
CLN3-201ENST00000333496 WFDC13Q8IUB5 93 aa8.32□□□□□ -1.08
CLN3-201ENST00000333496 C20orf166-AS1Q96NR2 134 aa8.32□□□□□ -1.08
CLN3-201ENST00000333496 NDUFB1O75438 58 aa8.32□□□□□ -1.08
CLN3-201ENST00000333496 A8MUU9 505 aa8.31□□□□□ -1.08
CLN3-201ENST00000333496 MP68P56378 58 aa8.31□□□□□ -1.08
CLN3-201ENST00000333496 CASC2Q6XLA1 102 aa8.31□□□□□ -1.08
CLN3-201ENST00000333496 H3BPC8 53 aa8.3□□□□□ -1.08
CLN3-201ENST00000333496 ATP11AUNQ6ZP68 121 aa8.3□□□□□ -1.08
CLN3-201ENST00000333496 NOTCH2NLQ7Z3S9 236 aa8.29□□□□□ -1.08
CLN3-201ENST00000333496 KRTAP16-1A8MUX0 517 aa8.27□□□□□ -1.09
CLN3-201ENST00000333496 LINC00313P59037 77 aa8.27□□□□□ -1.09
CLN3-201ENST00000333496 C4orf26Q17RF5 130 aa8.26□□□□□ -1.09
CLN3-201ENST00000333496 MMP24-AS1A0A0U1RRL7 71 aa8.25□□□□□ -1.09
CLN3-201ENST00000333496 MT1HP80294 61 aa8.25□□□□□ -1.09
CLN3-201ENST00000333496 A0A1B0GVX0 72 aa8.24□□□□□ -1.09
CLN3-201ENST00000333496 CYP4F30PQ9H0H9 118 aa8.24□□□□□ -1.09
CLN3-201ENST00000333496 TRAV22A0A0B4J277 110 aa8.23□□□□□ -1.09
CLN3-201ENST00000333496 hDV103S1A0JD37 113 aa8.23□□□□□ -1.09
CLN3-201ENST00000333496 FLGP20930 4061 aaPredicted RBP8.23□□□□□ -1.09
CLN3-201ENST00000333496 IGHV6-1A0A0B4J1U7 121 aa8.22□□□□□ -1.09
CLN3-201ENST00000333496 H0Y9P7 68 aa8.22□□□□□ -1.09
CLN3-201ENST00000333496 SPANXA2-OT1Q8N9U9 137 aa8.19□□□□□ -1.1
CLN3-201ENST00000333496 LINC00208Q96KT6 92 aa8.19□□□□□ -1.1
CLN3-201ENST00000333496 KRTAP9-2Q9BYQ4 174 aa8.19□□□□□ -1.1
CLN3-201ENST00000333496 TP53AIP1Q9HCN2 124 aa8.19□□□□□ -1.1
CLN3-201ENST00000333496 C8orf17Q9NRJ1 99 aa8.19□□□□□ -1.1
CLN3-201ENST00000333496 C8orf87E5RJ46 101 aa8.16□□□□□ -1.1
CLN3-201ENST00000333496 COX6B2Q6YFQ2 88 aa8.16□□□□□ -1.1
CLN3-201ENST00000333496 C1orf64Q8NEQ6 169 aa8.16□□□□□ -1.1
CLN3-201ENST00000333496 MRPL34Q9BQ48 92 aaKnown RBP8.09□□□□□ -1.11
CLN3-201ENST00000333496 MPLKIPQ8TAP9 179 aa8.08□□□□□ -1.12
CLN3-201ENST00000333496 Q1T7F1 81 aa8.07□□□□□ -1.12
CLN3-201ENST00000333496 LORP23490 312 aaPredicted RBP8.07□□□□□ -1.12
CLN3-201ENST00000333496 KRTAP10-6P60371 365 aaPredicted RBP8.07□□□□□ -1.12
CLN3-201ENST00000333496 Q8N9P0 234 aaPredicted RBP8.05□□□□□ -1.12
CLN3-201ENST00000333496 M0R2T5 61 aa8.04□□□□□ -1.12
CLN3-201ENST00000333496 V9GYY9 64 aa8.04□□□□□ -1.12
CLN3-201ENST00000333496 NDUFS5O43920 106 aa8.03□□□□□ -1.12
CLN3-201ENST00000333496 PRO0628Q9UI54 55 aa8.03□□□□□ -1.12
CLN3-201ENST00000333496 HRES1P13985 223 aa8.01□□□□□ -1.13
CLN3-201ENST00000333496 LCE2DQ5TA82 110 aaPredicted RBP8.01□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 105.2 ms