RNA–Protein interactions for RNA: ENST00000311487.9

HMGA1-201, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene HMGA1, Length 1,920 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-201ENST00000311487 NREPQ16612 68 aa10.5□□□□□ -0.73
HMGA1-201ENST00000311487 IGFL1Q6UW32 110 aa10.5□□□□□ -0.73
HMGA1-201ENST00000311487 SERP1Q9Y6X1 66 aa10.49□□□□□ -0.73
HMGA1-201ENST00000311487 C4orf48Q5BLP8 95 aa10.48□□□□□ -0.73
HMGA1-201ENST00000311487 FAM236DA0A1B0GTK5 79 aa10.46□□□□□ -0.74
HMGA1-201ENST00000311487 FAM236CP0DP71 79 aa10.46□□□□□ -0.74
HMGA1-201ENST00000311487 RETNLBQ9BQ08 111 aa10.45□□□□□ -0.74
HMGA1-201ENST00000311487 SEC61GP60059 68 aa10.43□□□□□ -0.74
HMGA1-201ENST00000311487 BPY2O14599 106 aa10.42□□□□□ -0.74
HMGA1-201ENST00000311487 V9GYY9 64 aa10.42□□□□□ -0.74
HMGA1-201ENST00000311487 SMIM26A0A096LP01 95 aa10.4□□□□□ -0.74
HMGA1-201ENST00000311487 Q8N9L7 120 aa10.39□□□□□ -0.75
HMGA1-201ENST00000311487 SPINK1P00995 79 aa10.39□□□□□ -0.75
HMGA1-201ENST00000311487 IGKV4-1P06312 121 aa10.39□□□□□ -0.75
HMGA1-201ENST00000311487 SPAG11AQ6PDA7 123 aa10.39□□□□□ -0.75
HMGA1-201ENST00000311487 A0A087WSZ3 146 aa10.35□□□□□ -0.75
HMGA1-201ENST00000311487 C1orf195Q5TG92 126 aa10.34□□□□□ -0.75
HMGA1-201ENST00000311487 ATP5EP56381 51 aaPredicted RBP10.32□□□□□ -0.76
HMGA1-201ENST00000311487 CD164Q04900 197 aa10.32□□□□□ -0.76
HMGA1-201ENST00000311487 DSCR10P59022 87 aa10.31□□□□□ -0.76
HMGA1-201ENST00000311487 PRR4Q16378 134 aa10.3□□□□□ -0.76
HMGA1-201ENST00000311487 C20orf197Q8N268 126 aa10.29□□□□□ -0.76
HMGA1-201ENST00000311487 H7BZZ5 65 aa10.28□□□□□ -0.76
HMGA1-201ENST00000311487 TRAV7A0A075B6U4 112 aa10.27□□□□□ -0.77
HMGA1-201ENST00000311487 KLKP1Q107X0 134 aa10.26□□□□□ -0.77
HMGA1-201ENST00000311487 LIMD2Q9BT23 127 aa10.26□□□□□ -0.77
HMGA1-201ENST00000311487 K7EQZ3 153 aa10.25□□□□□ -0.77
HMGA1-201ENST00000311487 NDUFC1O43677 76 aa10.25□□□□□ -0.77
HMGA1-201ENST00000311487 DEFB116Q30KQ4 102 aa10.25□□□□□ -0.77
HMGA1-201ENST00000311487 FP248Q71RG6 208 aaPredicted RBP10.25□□□□□ -0.77
HMGA1-201ENST00000311487 RPS29P62273 56 aaKnown RBP10.25□□□□□ -0.77
HMGA1-201ENST00000311487 LPAP08519 4548 aa10.23□□□□□ -0.77
HMGA1-201ENST00000311487 LINC00472Q9H8W2 130 aa10.21□□□□□ -0.77
HMGA1-201ENST00000311487 BRK1Q8WUW1 75 aa10.21□□□□□ -0.78
HMGA1-201ENST00000311487 HMCN2Q8NDA2 5059 aa10.19□□□□□ -0.78
HMGA1-201ENST00000311487 IGLV7-46A0A075B6I9 117 aa10.17□□□□□ -0.78
HMGA1-201ENST00000311487 OCR1Q9BZK8 76 aa10.17□□□□□ -0.78
HMGA1-201ENST00000311487 HCG22E2RYF7 251 aa10.14□□□□□ -0.79
HMGA1-201ENST00000311487 Q96NJ1 140 aa10.14□□□□□ -0.79
HMGA1-201ENST00000311487 A0A0U1RQV1 116 aa10.13□□□□□ -0.79
HMGA1-201ENST00000311487 A8MWP4 228 aa10.12□□□□□ -0.79
HMGA1-201ENST00000311487 PRR15Q8IV56 129 aa10.11□□□□□ -0.79
HMGA1-201ENST00000311487 ASB16-AS1Q495Z4 193 aa10.11□□□□□ -0.79
HMGA1-201ENST00000311487 LRP2P98164 4655 aa10.1□□□□□ -0.79
HMGA1-201ENST00000311487 C9orf92A6NGG3 77 aa10.09□□□□□ -0.79
HMGA1-201ENST00000311487 WFDC13Q8IUB5 93 aa10.07□□□□□ -0.8
HMGA1-201ENST00000311487 SNURFQ9Y675 71 aa10.06□□□□□ -0.8
HMGA1-201ENST00000311487 PMAIP1Q13794 54 aa10.05□□□□□ -0.8
HMGA1-201ENST00000311487 TMEM254Q8TBM7 123 aa10.03□□□□□ -0.8
HMGA1-201ENST00000311487 KRTAP13-3Q3SY46 172 aa10.03□□□□□ -0.8
HMGA1-201ENST00000311487 NDUFB1O75438 58 aa10.02□□□□□ -0.81
HMGA1-201ENST00000311487 CASC2Q6XLA1 102 aa10.02□□□□□ -0.81
HMGA1-201ENST00000311487 MMP24-AS1A0A0U1RRL7 71 aa10.01□□□□□ -0.81
HMGA1-201ENST00000311487 TPRXLQ17RH7 258 aa9.99□□□□□ -0.81
HMGA1-201ENST00000311487 IGHV6-1A0A0B4J1U7 121 aa9.97□□□□□ -0.81
HMGA1-201ENST00000311487 NOTCH2NLQ7Z3S9 236 aa9.96□□□□□ -0.81
HMGA1-201ENST00000311487 A0A1B0GVX0 72 aa9.95□□□□□ -0.82
HMGA1-201ENST00000311487 UBR4Q5T4S7 5183 aa9.95□□□□□ -0.82
HMGA1-201ENST00000311487 MPLKIPQ8TAP9 179 aa9.94□□□□□ -0.82
HMGA1-201ENST00000311487 C8orf17Q9NRJ1 99 aa9.94□□□□□ -0.82
HMGA1-201ENST00000311487 hDV103S1A0JD37 113 aa9.93□□□□□ -0.82
HMGA1-201ENST00000311487 XP32Q5T750 250 aa9.92□□□□□ -0.82
HMGA1-201ENST00000311487 ZCCHC13Q8WW36 166 aaKnown RBP9.88□□□□□ -0.83
HMGA1-201ENST00000311487 Q1T7F1 81 aa9.88□□□□□ -0.83
HMGA1-201ENST00000311487 LINC00313P59037 77 aa9.87□□□□□ -0.83
HMGA1-201ENST00000311487 MP68P56378 58 aa9.83□□□□□ -0.84
HMGA1-201ENST00000311487 H0Y9P7 68 aa9.82□□□□□ -0.84
HMGA1-201ENST00000311487 MRPL34Q9BQ48 92 aaKnown RBP9.82□□□□□ -0.84
HMGA1-201ENST00000311487 LINC00208Q96KT6 92 aa9.79□□□□□ -0.84
HMGA1-201ENST00000311487 TP53AIP1Q9HCN2 124 aa9.79□□□□□ -0.84
HMGA1-201ENST00000311487 MUC2Q02817 5179 aa9.79□□□□□ -0.84
HMGA1-201ENST00000311487 KRTAP16-1A8MUX0 517 aa9.78□□□□□ -0.84
HMGA1-201ENST00000311487 H3BPC8 53 aa9.78□□□□□ -0.84
HMGA1-201ENST00000311487 RNF213Q63HN8 5207 aa9.77□□□□□ -0.84
HMGA1-201ENST00000311487 TRAV22A0A0B4J277 110 aa9.77□□□□□ -0.85
HMGA1-201ENST00000311487 C8orf87E5RJ46 101 aa9.77□□□□□ -0.85
HMGA1-201ENST00000311487 NDUFS5O43920 106 aa9.76□□□□□ -0.85
HMGA1-201ENST00000311487 PCOTHQ58A44 107 aa9.74□□□□□ -0.85
HMGA1-201ENST00000311487 RPL37P61927 97 aaKnown RBP9.72□□□□□ -0.85
HMGA1-201ENST00000311487 C1orf64Q8NEQ6 169 aa9.72□□□□□ -0.85
HMGA1-201ENST00000311487 KTN1-AS1Q86SY8 53 aa9.7□□□□□ -0.86
HMGA1-201ENST00000311487 C20orf166-AS1Q96NR2 134 aa9.7□□□□□ -0.86
HMGA1-201ENST00000311487 A8MUU9 505 aa9.68□□□□□ -0.86
HMGA1-201ENST00000311487 Q75L30 129 aa9.68□□□□□ -0.86
HMGA1-201ENST00000311487 SEC61BP60468 96 aaKnown RBP9.66□□□□□ -0.86
HMGA1-201ENST00000311487 CYP4F30PQ9H0H9 118 aa9.66□□□□□ -0.86
HMGA1-201ENST00000311487 ATP11AUNQ6ZP68 121 aa9.64□□□□□ -0.87
HMGA1-201ENST00000311487 KRTAP4-1Q9BYQ7 146 aa9.64□□□□□ -0.87
HMGA1-201ENST00000311487 MUC17Q685J3 4493 aa9.63□□□□□ -0.87
HMGA1-201ENST00000311487 Q5W150 140 aa9.62□□□□□ -0.87
HMGA1-201ENST00000311487 Q8N9P0 234 aaPredicted RBP9.62□□□□□ -0.87
HMGA1-201ENST00000311487 RBM12B-AS1Q9P1G2 102 aa9.62□□□□□ -0.87
HMGA1-201ENST00000311487 PSPHP1O15172 72 aa9.6□□□□□ -0.87
HMGA1-201ENST00000311487 SPANXA2-OT1Q8N9U9 137 aa9.59□□□□□ -0.87
HMGA1-201ENST00000311487 LOC101927531A0A1B0GV80 90 aa9.54□□□□□ -0.88
HMGA1-201ENST00000311487 Q5VV11 94 aa9.54□□□□□ -0.88
HMGA1-201ENST00000311487 A8MUN3 132 aa9.53□□□□□ -0.88
HMGA1-201ENST00000311487 CHKB-CPT1BH3BT56 60 aa9.46□□□□□ -0.9
HMGA1-201ENST00000311487 A6NN06 94 aa9.44□□□□□ -0.9
HMGA1-201ENST00000311487 C7orf65Q6ZTY9 151 aa9.43□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 73 ms