RNA–Protein interactions for RNA: ENST00000292538.8

CUX1-202, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 2,930 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-202ENST00000292538 PLA2G1BP04054 148 aaKnown RBP6.75□□□□□ -1.33
CUX1-202ENST00000292538 MP68P56378 58 aa6.74□□□□□ -1.33
CUX1-202ENST00000292538 MMP24-AS1A0A0U1RRL7 71 aa6.74□□□□□ -1.33
CUX1-202ENST00000292538 KRTAP29-1A8MX34 341 aaPredicted RBP6.74□□□□□ -1.33
CUX1-202ENST00000292538 LCE6AA0A183 80 aa6.73□□□□□ -1.33
CUX1-202ENST00000292538 KRTAP13-2Q52LG2 175 aa6.73□□□□□ -1.33
CUX1-202ENST00000292538 H0Y9P7 68 aa6.73□□□□□ -1.33
CUX1-202ENST00000292538 NDUFC1O43677 76 aa6.73□□□□□ -1.33
CUX1-202ENST00000292538 KMT2CQ8NEZ4 4911 aaKnown RBP6.72□□□□□ -1.33
CUX1-202ENST00000292538 C8orf17Q9NRJ1 99 aa6.72□□□□□ -1.33
CUX1-202ENST00000292538 A0A1B0GVX0 72 aa6.71□□□□□ -1.33
CUX1-202ENST00000292538 SSBP3-AS1Q7Z2R9 100 aa6.7□□□□□ -1.34
CUX1-202ENST00000292538 TYMSOSQ8TAI1 123 aa6.68□□□□□ -1.34
CUX1-202ENST00000292538 RETNLBQ9BQ08 111 aa6.68□□□□□ -1.34
CUX1-202ENST00000292538 FAT1Q14517 4588 aa6.68□□□□□ -1.34
CUX1-202ENST00000292538 C1orf64Q8NEQ6 169 aa6.68□□□□□ -1.34
CUX1-202ENST00000292538 PCOTHQ58A44 107 aa6.67□□□□□ -1.34
CUX1-202ENST00000292538 SERP1Q9Y6X1 66 aa6.67□□□□□ -1.34
CUX1-202ENST00000292538 KRTAP1-4P0C5Y4 121 aa6.66□□□□□ -1.34
CUX1-202ENST00000292538 BRK1Q8WUW1 75 aa6.66□□□□□ -1.34
CUX1-202ENST00000292538 TRAV22A0A0B4J277 110 aa6.65□□□□□ -1.34
CUX1-202ENST00000292538 DYNC1H1Q14204 4646 aaKnown RBP6.65□□□□□ -1.35
CUX1-202ENST00000292538 MRPL34Q9BQ48 92 aaKnown RBP6.64□□□□□ -1.35
CUX1-202ENST00000292538 ZCCHC13Q8WW36 166 aaKnown RBP6.63□□□□□ -1.35
CUX1-202ENST00000292538 SMIM26A0A096LP01 95 aa6.62□□□□□ -1.35
CUX1-202ENST00000292538 MPLKIPQ8TAP9 179 aa6.62□□□□□ -1.35
CUX1-202ENST00000292538 FP248Q71RG6 208 aaPredicted RBP6.61□□□□□ -1.35
CUX1-202ENST00000292538 FAM229BQ4G0N7 80 aa6.61□□□□□ -1.35
CUX1-202ENST00000292538 LINC00313P59037 77 aa6.6□□□□□ -1.35
CUX1-202ENST00000292538 RBM12B-AS1Q9P1G2 102 aa6.6□□□□□ -1.35
CUX1-202ENST00000292538 A0A1B0GVY2 172 aa6.59□□□□□ -1.35
CUX1-202ENST00000292538 RYR2Q92736 4967 aa6.59□□□□□ -1.35
CUX1-202ENST00000292538 J3QL48 77 aa6.58□□□□□ -1.36
CUX1-202ENST00000292538 ATP5EP56381 51 aaPredicted RBP6.58□□□□□ -1.36
CUX1-202ENST00000292538 TP53AIP1Q9HCN2 124 aa6.58□□□□□ -1.36
CUX1-202ENST00000292538 C8orf87E5RJ46 101 aa6.57□□□□□ -1.36
CUX1-202ENST00000292538 Q5W150 140 aa6.56□□□□□ -1.36
CUX1-202ENST00000292538 LIMD2Q9BT23 127 aa6.56□□□□□ -1.36
CUX1-202ENST00000292538 ASB16-AS1Q495Z4 193 aa6.55□□□□□ -1.36
CUX1-202ENST00000292538 LINC00304Q8N9R0 145 aa6.55□□□□□ -1.36
CUX1-202ENST00000292538 FLG2Q5D862 2391 aaPredicted RBP6.54□□□□□ -1.36
CUX1-202ENST00000292538 APOBP04114 4563 aaKnown RBP6.52□□□□□ -1.37
CUX1-202ENST00000292538 SPINK1P00995 79 aa6.52□□□□□ -1.37
CUX1-202ENST00000292538 H3BPC8 53 aa6.52□□□□□ -1.37
CUX1-202ENST00000292538 C9orf92A6NGG3 77 aa6.49□□□□□ -1.37
CUX1-202ENST00000292538 RYR3Q15413 4870 aa6.49□□□□□ -1.37
CUX1-202ENST00000292538 DMBT1Q9UGM3 2413 aaPredicted RBP6.49□□□□□ -1.37
CUX1-202ENST00000292538 Q8N9P0 234 aaPredicted RBP6.48□□□□□ -1.37
CUX1-202ENST00000292538 IGKV2D-30A0A075B6S6 120 aa6.46□□□□□ -1.37
CUX1-202ENST00000292538 FAM229AH3BQW9 127 aa6.46□□□□□ -1.37
CUX1-202ENST00000292538 IGKV2-30P06310 120 aa6.46□□□□□ -1.37
CUX1-202ENST00000292538 PSPHP1O15172 72 aa6.44□□□□□ -1.38
CUX1-202ENST00000292538 KRTAP10-4P60372 401 aaPredicted RBP6.44□□□□□ -1.38
CUX1-202ENST00000292538 CYP4F30PQ9H0H9 118 aa6.44□□□□□ -1.38
CUX1-202ENST00000292538 IGLV7-46A0A075B6I9 117 aa6.43□□□□□ -1.38
CUX1-202ENST00000292538 SPANXA2-OT1Q8N9U9 137 aa6.43□□□□□ -1.38
CUX1-202ENST00000292538 LRP1Q07954 4544 aaKnown RBP6.43□□□□□ -1.38
CUX1-202ENST00000292538 LOC101927531A0A1B0GV80 90 aa6.43□□□□□ -1.38
CUX1-202ENST00000292538 Q5VSD8 79 aa6.42□□□□□ -1.38
CUX1-202ENST00000292538 SPAG11AQ6PDA7 123 aa6.42□□□□□ -1.38
CUX1-202ENST00000292538 COA5Q86WW8 74 aa6.42□□□□□ -1.38
CUX1-202ENST00000292538 KRTAP16-1A8MUX0 517 aa6.4□□□□□ -1.38
CUX1-202ENST00000292538 KRTAP13-3Q3SY46 172 aa6.38□□□□□ -1.39
CUX1-202ENST00000292538 HRES1P13985 223 aa6.38□□□□□ -1.39
CUX1-202ENST00000292538 KTN1-AS1Q86SY8 53 aa6.37□□□□□ -1.39
CUX1-202ENST00000292538 KIAA1109Q2LD37 5005 aa6.37□□□□□ -1.39
CUX1-202ENST00000292538 HSPG2P98160 4391 aa6.36□□□□□ -1.39
CUX1-202ENST00000292538 Q8N1X5 172 aa6.36□□□□□ -1.39
CUX1-202ENST00000292538 A8MUN3 132 aa6.34□□□□□ -1.39
CUX1-202ENST00000292538 PKHD1L1Q86WI1 4243 aa6.33□□□□□ -1.4
CUX1-202ENST00000292538 MYCBP2O75592 4640 aa6.33□□□□□ -1.4
CUX1-202ENST00000292538 CHKB-CPT1BH3BT56 60 aa6.32□□□□□ -1.4
CUX1-202ENST00000292538 KRTAP17-1Q9BYP8 105 aa6.32□□□□□ -1.4
CUX1-202ENST00000292538 Q75L30 129 aa6.32□□□□□ -1.4
CUX1-202ENST00000292538 PRR15LQ9BU68 103 aa6.31□□□□□ -1.4
CUX1-202ENST00000292538 RPS29P62273 56 aaKnown RBP6.3□□□□□ -1.4
CUX1-202ENST00000292538 Q1T7F1 81 aa6.29□□□□□ -1.4
CUX1-202ENST00000292538 EPPK1P58107 5090 aaKnown RBP6.29□□□□□ -1.4
CUX1-202ENST00000292538 C7orf65Q6ZTY9 151 aa6.29□□□□□ -1.4
CUX1-202ENST00000292538 ACYP2P14621 99 aa6.28□□□□□ -1.4
CUX1-202ENST00000292538 RYR1P21817 5038 aa6.27□□□□□ -1.41
CUX1-202ENST00000292538 TNXBP22105 4242 aa6.22□□□□□ -1.41
CUX1-202ENST00000292538 KRTAP10-8P60410 259 aa6.22□□□□□ -1.41
CUX1-202ENST00000292538 DMAC1Q96GE9 116 aa6.22□□□□□ -1.41
CUX1-202ENST00000292538 Q5VV11 94 aa6.2□□□□□ -1.42
CUX1-202ENST00000292538 LCA10Q71F78 164 aa6.19□□□□□ -1.42
CUX1-202ENST00000292538 A8MU10 97 aa6.19□□□□□ -1.42
CUX1-202ENST00000292538 FAT3Q8TDW7 4589 aa6.19□□□□□ -1.42
CUX1-202ENST00000292538 SPINK7P58062 85 aa6.19□□□□□ -1.42
CUX1-202ENST00000292538 C20orf166-AS1Q96NR2 134 aa6.19□□□□□ -1.42
CUX1-202ENST00000292538 A6NED7 52 aa6.18□□□□□ -1.42
CUX1-202ENST00000292538 A8MUU9 505 aa6.18□□□□□ -1.42
CUX1-202ENST00000292538 ATP11AUNQ6ZP68 121 aa6.15□□□□□ -1.42
CUX1-202ENST00000292538 KRTAP4-5Q9BYR2 181 aa6.14□□□□□ -1.43
CUX1-202ENST00000292538 LINC01558Q9Y6Z2 57 aa6.12□□□□□ -1.43
CUX1-202ENST00000292538 SPTSSBQ8NFR3 76 aa6.11□□□□□ -1.43
CUX1-202ENST00000292538 MT1HL1P0DM35 61 aa6.11□□□□□ -1.43
CUX1-202ENST00000292538 A0A1B0GU69 56 aa6.09□□□□□ -1.43
CUX1-202ENST00000292538 LINC01554Q52M75 96 aa6.09□□□□□ -1.43
CUX1-202ENST00000292538 XP32Q5T750 250 aa6.07□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 18.2 ms