RNA–Protein interactions for RNA: ENST00000265081.6

MSH3-201, Transcript of mutS homolog 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene MSH3, Length 4,092 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3-201ENST00000265081 KRTAP13-3Q3SY46 172 aa6.52□□□□□ -1.37
MSH3-201ENST00000265081 PKHD1P08F94 4074 aa6.52□□□□□ -1.37
MSH3-201ENST00000265081 C1orf64Q8NEQ6 169 aa6.5□□□□□ -1.37
MSH3-201ENST00000265081 KRTAP1-4P0C5Y4 121 aa6.5□□□□□ -1.37
MSH3-201ENST00000265081 KRTAP13-2Q52LG2 175 aa6.5□□□□□ -1.37
MSH3-201ENST00000265081 APOBP04114 4563 aaKnown RBP6.49□□□□□ -1.37
MSH3-201ENST00000265081 LINC00208Q96KT6 92 aa6.48□□□□□ -1.37
MSH3-201ENST00000265081 TGP01266 2768 aa6.48□□□□□ -1.37
MSH3-201ENST00000265081 HRCT1Q6UXD1 115 aa6.48□□□□□ -1.37
MSH3-201ENST00000265081 MRPL34Q9BQ48 92 aaKnown RBP6.48□□□□□ -1.37
MSH3-201ENST00000265081 Q1T7F1 81 aa6.47□□□□□ -1.37
MSH3-201ENST00000265081 A0A087X002 238 aa6.47□□□□□ -1.37
MSH3-201ENST00000265081 NOTCH2NLQ7Z3S9 236 aa6.47□□□□□ -1.37
MSH3-201ENST00000265081 IGLV7-46A0A075B6I9 117 aa6.46□□□□□ -1.38
MSH3-201ENST00000265081 DYNC1H1Q14204 4646 aaKnown RBP6.45□□□□□ -1.38
MSH3-201ENST00000265081 C8orf87E5RJ46 101 aa6.45□□□□□ -1.38
MSH3-201ENST00000265081 IGHV6-1A0A0B4J1U7 121 aa6.44□□□□□ -1.38
MSH3-201ENST00000265081 KRTAP16-1A8MUX0 517 aa6.41□□□□□ -1.38
MSH3-201ENST00000265081 Q8N9P0 234 aaPredicted RBP6.41□□□□□ -1.38
MSH3-201ENST00000265081 C1orf195Q5TG92 126 aa6.4□□□□□ -1.39
MSH3-201ENST00000265081 A0A1B0GVY2 172 aa6.4□□□□□ -1.39
MSH3-201ENST00000265081 CDK2AP2O75956 126 aa6.4□□□□□ -1.39
MSH3-201ENST00000265081 RYR2Q92736 4967 aa6.39□□□□□ -1.39
MSH3-201ENST00000265081 RPS29P62273 56 aaKnown RBP6.38□□□□□ -1.39
MSH3-201ENST00000265081 Q5W150 140 aa6.37□□□□□ -1.39
MSH3-201ENST00000265081 LOC101927531A0A1B0GV80 90 aa6.36□□□□□ -1.39
MSH3-201ENST00000265081 KRTAP10-4P60372 401 aaPredicted RBP6.36□□□□□ -1.39
MSH3-201ENST00000265081 LINC00336Q6ZUF6 198 aa6.36□□□□□ -1.39
MSH3-201ENST00000265081 SPINK6Q6UWN8 80 aa6.35□□□□□ -1.39
MSH3-201ENST00000265081 LIMD2Q9BT23 127 aa6.34□□□□□ -1.39
MSH3-201ENST00000265081 PRR4Q16378 134 aa6.32□□□□□ -1.4
MSH3-201ENST00000265081 V9GYY9 64 aa6.32□□□□□ -1.4
MSH3-201ENST00000265081 LINC00313P59037 77 aa6.31□□□□□ -1.4
MSH3-201ENST00000265081 PRO0628Q9UI54 55 aa6.31□□□□□ -1.4
MSH3-201ENST00000265081 MPLKIPQ8TAP9 179 aa6.31□□□□□ -1.4
MSH3-201ENST00000265081 SPINK1P00995 79 aa6.3□□□□□ -1.4
MSH3-201ENST00000265081 COA5Q86WW8 74 aa6.3□□□□□ -1.4
MSH3-201ENST00000265081 NDUFS5O43920 106 aa6.29□□□□□ -1.4
MSH3-201ENST00000265081 FAM229AH3BQW9 127 aa6.28□□□□□ -1.4
MSH3-201ENST00000265081 PCOTHQ58A44 107 aa6.27□□□□□ -1.41
MSH3-201ENST00000265081 PLA2G1BP04054 148 aaKnown RBP6.26□□□□□ -1.41
MSH3-201ENST00000265081 HRES1P13985 223 aa6.26□□□□□ -1.41
MSH3-201ENST00000265081 IGKV2-30P06310 120 aa6.26□□□□□ -1.41
MSH3-201ENST00000265081 TNXBP22105 4242 aa6.26□□□□□ -1.41
MSH3-201ENST00000265081 PRR26Q8N8Z3 221 aa6.25□□□□□ -1.41
MSH3-201ENST00000265081 Q5VV11 94 aa6.25□□□□□ -1.41
MSH3-201ENST00000265081 TYMSOSQ8TAI1 123 aa6.25□□□□□ -1.41
MSH3-201ENST00000265081 SEC61GP60059 68 aa6.24□□□□□ -1.41
MSH3-201ENST00000265081 DMAC1Q96GE9 116 aa6.24□□□□□ -1.41
MSH3-201ENST00000265081 SPAG11AQ6PDA7 123 aa6.24□□□□□ -1.41
MSH3-201ENST00000265081 HSPG2P98160 4391 aa6.23□□□□□ -1.41
MSH3-201ENST00000265081 LINC01558Q9Y6Z2 57 aa6.22□□□□□ -1.41
MSH3-201ENST00000265081 Q75L30 129 aa6.21□□□□□ -1.42
MSH3-201ENST00000265081 KMT2CQ8NEZ4 4911 aaKnown RBP6.21□□□□□ -1.42
MSH3-201ENST00000265081 FAT1Q14517 4588 aa6.2□□□□□ -1.42
MSH3-201ENST00000265081 LINC00304Q8N9R0 145 aa6.2□□□□□ -1.42
MSH3-201ENST00000265081 A8MUN3 132 aa6.19□□□□□ -1.42
MSH3-201ENST00000265081 PSPHP1O15172 72 aa6.16□□□□□ -1.42
MSH3-201ENST00000265081 C4orf48Q5BLP8 95 aa6.16□□□□□ -1.42
MSH3-201ENST00000265081 FAT3Q8TDW7 4589 aa6.16□□□□□ -1.42
MSH3-201ENST00000265081 ACYP2P14621 99 aa6.15□□□□□ -1.42
MSH3-201ENST00000265081 BRK1Q8WUW1 75 aa6.15□□□□□ -1.42
MSH3-201ENST00000265081 C20orf166-AS1Q96NR2 134 aa6.15□□□□□ -1.43
MSH3-201ENST00000265081 A8MUU9 505 aa6.13□□□□□ -1.43
MSH3-201ENST00000265081 IGKV2D-30A0A075B6S6 120 aa6.1□□□□□ -1.43
MSH3-201ENST00000265081 PRR15LQ9BU68 103 aa6.1□□□□□ -1.43
MSH3-201ENST00000265081 SMR3BP02814 79 aaPredicted RBP6.09□□□□□ -1.43
MSH3-201ENST00000265081 RYR3Q15413 4870 aa6.08□□□□□ -1.44
MSH3-201ENST00000265081 RYR1P21817 5038 aa6.05□□□□□ -1.44
MSH3-201ENST00000265081 LCA10Q71F78 164 aa6.05□□□□□ -1.44
MSH3-201ENST00000265081 RETNLBQ9BQ08 111 aa6.05□□□□□ -1.44
MSH3-201ENST00000265081 KRTAP10-8P60410 259 aa6.04□□□□□ -1.44
MSH3-201ENST00000265081 C7orf65Q6ZTY9 151 aa6.04□□□□□ -1.44
MSH3-201ENST00000265081 CHKB-CPT1BH3BT56 60 aa6.04□□□□□ -1.44
MSH3-201ENST00000265081 CDC42SE1Q9NRR8 79 aa6.03□□□□□ -1.44
MSH3-201ENST00000265081 A8MU10 97 aa6.03□□□□□ -1.44
MSH3-201ENST00000265081 LRP1Q07954 4544 aaKnown RBP5.99□□□□□ -1.45
MSH3-201ENST00000265081 SPINK7P58062 85 aa5.98□□□□□ -1.45
MSH3-201ENST00000265081 ATP11AUNQ6ZP68 121 aa5.98□□□□□ -1.45
MSH3-201ENST00000265081 KRTAP17-1Q9BYP8 105 aa5.97□□□□□ -1.45
MSH3-201ENST00000265081 Q8N1X5 172 aa5.96□□□□□ -1.45
MSH3-201ENST00000265081 KRTAP3-1Q9BYR8 98 aa5.96□□□□□ -1.46
MSH3-201ENST00000265081 A6NED7 52 aa5.95□□□□□ -1.46
MSH3-201ENST00000265081 C9orf92A6NGG3 77 aa5.93□□□□□ -1.46
MSH3-201ENST00000265081 FLG2Q5D862 2391 aaPredicted RBP5.93□□□□□ -1.46
MSH3-201ENST00000265081 A6NN06 94 aa5.92□□□□□ -1.46
MSH3-201ENST00000265081 Q5VSD8 79 aa5.92□□□□□ -1.46
MSH3-201ENST00000265081 SPATA8Q6RVD6 105 aa5.9□□□□□ -1.46
MSH3-201ENST00000265081 H3BS24 57 aa5.9□□□□□ -1.47
MSH3-201ENST00000265081 A0A1B0GU69 56 aa5.89□□□□□ -1.47
MSH3-201ENST00000265081 MT1HL1P0DM35 61 aa5.88□□□□□ -1.47
MSH3-201ENST00000265081 RPL37P61927 97 aaKnown RBP5.85□□□□□ -1.47
MSH3-201ENST00000265081 PMAIP1Q13794 54 aa5.84□□□□□ -1.47
MSH3-201ENST00000265081 COX6B2Q6YFQ2 88 aa5.83□□□□□ -1.48
MSH3-201ENST00000265081 SPTSSBQ8NFR3 76 aa5.82□□□□□ -1.48
MSH3-201ENST00000265081 XP32Q5T750 250 aa5.82□□□□□ -1.48
MSH3-201ENST00000265081 EPPK1P58107 5090 aaKnown RBP5.8□□□□□ -1.48
MSH3-201ENST00000265081 UQCR11O14957 56 aa5.8□□□□□ -1.48
MSH3-201ENST00000265081 KTN1-AS1Q86SY8 53 aa5.79□□□□□ -1.48
MSH3-201ENST00000265081 MYCBP2O75592 4640 aa5.79□□□□□ -1.48
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms