RNA–Protein interactions for RNA: ENST00000262554.6

SPTLC1-201, Transcript of serine palmitoyltransferase long chain base subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SPTLC1, Length 1,894 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPTLC1-201ENST00000262554 ASB16-AS1Q495Z4 193 aa7.58□□□□□ -1.2
SPTLC1-201ENST00000262554 H0Y9P7 68 aa7.58□□□□□ -1.2
SPTLC1-201ENST00000262554 H3BPC8 53 aa7.58□□□□□ -1.2
SPTLC1-201ENST00000262554 HYDINQ4G0P3 5121 aa7.57□□□□□ -1.2
SPTLC1-201ENST00000262554 KRTAP13-2Q52LG2 175 aa7.56□□□□□ -1.2
SPTLC1-201ENST00000262554 SPINK6Q6UWN8 80 aa7.56□□□□□ -1.2
SPTLC1-201ENST00000262554 LINC00208Q96KT6 92 aa7.56□□□□□ -1.2
SPTLC1-201ENST00000262554 TP53AIP1Q9HCN2 124 aa7.55□□□□□ -1.2
SPTLC1-201ENST00000262554 TRAV22A0A0B4J277 110 aa7.53□□□□□ -1.2
SPTLC1-201ENST00000262554 KRTAP1-4P0C5Y4 121 aa7.53□□□□□ -1.2
SPTLC1-201ENST00000262554 FAT2Q9NYQ8 4349 aa7.53□□□□□ -1.2
SPTLC1-201ENST00000262554 MRPL34Q9BQ48 92 aaKnown RBP7.52□□□□□ -1.21
SPTLC1-201ENST00000262554 NDUFS5O43920 106 aa7.51□□□□□ -1.21
SPTLC1-201ENST00000262554 Q5XG85 94 aa7.51□□□□□ -1.21
SPTLC1-201ENST00000262554 C1orf64Q8NEQ6 169 aa7.51□□□□□ -1.21
SPTLC1-201ENST00000262554 SVIPQ8NHG7 77 aa7.51□□□□□ -1.21
SPTLC1-201ENST00000262554 NOTCH2NLQ7Z3S9 236 aa7.5□□□□□ -1.21
SPTLC1-201ENST00000262554 A0A1B0GVY2 172 aa7.49□□□□□ -1.21
SPTLC1-201ENST00000262554 C8orf87E5RJ46 101 aa7.48□□□□□ -1.21
SPTLC1-201ENST00000262554 LIMD2Q9BT23 127 aa7.48□□□□□ -1.21
SPTLC1-201ENST00000262554 SMIM26A0A096LP01 95 aa7.47□□□□□ -1.21
SPTLC1-201ENST00000262554 TYMSOSQ8TAI1 123 aa7.47□□□□□ -1.21
SPTLC1-201ENST00000262554 C1orf195Q5TG92 126 aa7.46□□□□□ -1.22
SPTLC1-201ENST00000262554 CYP4F30PQ9H0H9 118 aa7.45□□□□□ -1.22
SPTLC1-201ENST00000262554 SPANXA2-OT1Q8N9U9 137 aa7.44□□□□□ -1.22
SPTLC1-201ENST00000262554 LRP1BQ9NZR2 4599 aa7.44□□□□□ -1.22
SPTLC1-201ENST00000262554 SMR3BP02814 79 aaPredicted RBP7.43□□□□□ -1.22
SPTLC1-201ENST00000262554 LINC00313P59037 77 aa7.43□□□□□ -1.22
SPTLC1-201ENST00000262554 PRR4Q16378 134 aa7.43□□□□□ -1.22
SPTLC1-201ENST00000262554 SPINK1P00995 79 aa7.41□□□□□ -1.22
SPTLC1-201ENST00000262554 SACSQ9NZJ4 4579 aa7.39□□□□□ -1.23
SPTLC1-201ENST00000262554 FP248Q71RG6 208 aaPredicted RBP7.38□□□□□ -1.23
SPTLC1-201ENST00000262554 VPS13BQ7Z7G8 4022 aa7.38□□□□□ -1.23
SPTLC1-201ENST00000262554 C4orf26Q17RF5 130 aa7.38□□□□□ -1.23
SPTLC1-201ENST00000262554 PRR26Q8N8Z3 221 aa7.38□□□□□ -1.23
SPTLC1-201ENST00000262554 PCOTHQ58A44 107 aa7.36□□□□□ -1.23
SPTLC1-201ENST00000262554 LINC00304Q8N9R0 145 aa7.36□□□□□ -1.23
SPTLC1-201ENST00000262554 PKHD1P08F94 4074 aa7.36□□□□□ -1.23
SPTLC1-201ENST00000262554 IGLV7-46A0A075B6I9 117 aa7.35□□□□□ -1.23
SPTLC1-201ENST00000262554 LOC101927531A0A1B0GV80 90 aa7.35□□□□□ -1.23
SPTLC1-201ENST00000262554 RPS29P62273 56 aaKnown RBP7.35□□□□□ -1.23
SPTLC1-201ENST00000262554 XP32Q5T750 250 aa7.35□□□□□ -1.23
SPTLC1-201ENST00000262554 SPAG11AQ6PDA7 123 aa7.35□□□□□ -1.23
SPTLC1-201ENST00000262554 Q5W150 140 aa7.34□□□□□ -1.23
SPTLC1-201ENST00000262554 Q8N9P0 234 aaPredicted RBP7.34□□□□□ -1.23
SPTLC1-201ENST00000262554 KRTAP10-4P60372 401 aaPredicted RBP7.33□□□□□ -1.24
SPTLC1-201ENST00000262554 KRTAP13-3Q3SY46 172 aa7.33□□□□□ -1.24
SPTLC1-201ENST00000262554 KRTAP16-1A8MUX0 517 aa7.31□□□□□ -1.24
SPTLC1-201ENST00000262554 MPLKIPQ8TAP9 179 aa7.31□□□□□ -1.24
SPTLC1-201ENST00000262554 DYNC1H1Q14204 4646 aaKnown RBP7.27□□□□□ -1.25
SPTLC1-201ENST00000262554 Q1T7F1 81 aa7.25□□□□□ -1.25
SPTLC1-201ENST00000262554 RETNLBQ9BQ08 111 aa7.25□□□□□ -1.25
SPTLC1-201ENST00000262554 COA5Q86WW8 74 aa7.24□□□□□ -1.25
SPTLC1-201ENST00000262554 RYR2Q92736 4967 aa7.24□□□□□ -1.25
SPTLC1-201ENST00000262554 IGKV2-30P06310 120 aa7.21□□□□□ -1.26
SPTLC1-201ENST00000262554 V9GYY9 64 aa7.21□□□□□ -1.26
SPTLC1-201ENST00000262554 APOBP04114 4563 aaKnown RBP7.18□□□□□ -1.26
SPTLC1-201ENST00000262554 HRES1P13985 223 aa7.17□□□□□ -1.26
SPTLC1-201ENST00000262554 LOC100996750A0A140TA64 210 aa7.17□□□□□ -1.26
SPTLC1-201ENST00000262554 KRTAP4-6Q9BYQ5 205 aa7.17□□□□□ -1.26
SPTLC1-201ENST00000262554 KMT2CQ8NEZ4 4911 aaKnown RBP7.16□□□□□ -1.26
SPTLC1-201ENST00000262554 Q5VSD8 79 aa7.15□□□□□ -1.27
SPTLC1-201ENST00000262554 IGKV2D-30A0A075B6S6 120 aa7.14□□□□□ -1.27
SPTLC1-201ENST00000262554 ACYP2P14621 99 aa7.13□□□□□ -1.27
SPTLC1-201ENST00000262554 PSPHP1O15172 72 aa7.12□□□□□ -1.27
SPTLC1-201ENST00000262554 DMAC1Q96GE9 116 aa7.12□□□□□ -1.27
SPTLC1-201ENST00000262554 C9orf92A6NGG3 77 aa7.11□□□□□ -1.27
SPTLC1-201ENST00000262554 FAT1Q14517 4588 aa7.1□□□□□ -1.27
SPTLC1-201ENST00000262554 A8MUN3 132 aa7.09□□□□□ -1.28
SPTLC1-201ENST00000262554 C20orf166-AS1Q96NR2 134 aa7.09□□□□□ -1.28
SPTLC1-201ENST00000262554 A8MUU9 505 aa7.08□□□□□ -1.28
SPTLC1-201ENST00000262554 C7orf65Q6ZTY9 151 aa7.08□□□□□ -1.28
SPTLC1-201ENST00000262554 Q8N1X5 172 aa7.07□□□□□ -1.28
SPTLC1-201ENST00000262554 KRTAP10-8P60410 259 aa7.07□□□□□ -1.28
SPTLC1-201ENST00000262554 BRK1Q8WUW1 75 aa7.07□□□□□ -1.28
SPTLC1-201ENST00000262554 KRTAP19-4Q3LI73 84 aa7.06□□□□□ -1.28
SPTLC1-201ENST00000262554 PRO0628Q9UI54 55 aa7.05□□□□□ -1.28
SPTLC1-201ENST00000262554 PKHD1L1Q86WI1 4243 aa7.05□□□□□ -1.28
SPTLC1-201ENST00000262554 CHKB-CPT1BH3BT56 60 aa7.04□□□□□ -1.28
SPTLC1-201ENST00000262554 PRR15LQ9BU68 103 aa7.04□□□□□ -1.28
SPTLC1-201ENST00000262554 Q5VV11 94 aa7.04□□□□□ -1.28
SPTLC1-201ENST00000262554 LINC01558Q9Y6Z2 57 aa7.04□□□□□ -1.28
SPTLC1-201ENST00000262554 FLG2Q5D862 2391 aaPredicted RBP7.03□□□□□ -1.28
SPTLC1-201ENST00000262554 KRTAP23-1A1A580 65 aa6.98□□□□□ -1.29
SPTLC1-201ENST00000262554 Q75L30 129 aa6.98□□□□□ -1.29
SPTLC1-201ENST00000262554 KRTAP17-1Q9BYP8 105 aa6.96□□□□□ -1.29
SPTLC1-201ENST00000262554 RYR3Q15413 4870 aa6.95□□□□□ -1.3
SPTLC1-201ENST00000262554 HSPG2P98160 4391 aa6.94□□□□□ -1.3
SPTLC1-201ENST00000262554 SPINK7P58062 85 aa6.92□□□□□ -1.3
SPTLC1-201ENST00000262554 A6NED7 52 aa6.9□□□□□ -1.3
SPTLC1-201ENST00000262554 RYR1P21817 5038 aa6.89□□□□□ -1.31
SPTLC1-201ENST00000262554 MT1HL1P0DM35 61 aa6.89□□□□□ -1.31
SPTLC1-201ENST00000262554 ATP11AUNQ6ZP68 121 aa6.88□□□□□ -1.31
SPTLC1-201ENST00000262554 LRP1Q07954 4544 aaKnown RBP6.88□□□□□ -1.31
SPTLC1-201ENST00000262554 TNXBP22105 4242 aa6.87□□□□□ -1.31
SPTLC1-201ENST00000262554 A0A1B0GU69 56 aa6.85□□□□□ -1.31
SPTLC1-201ENST00000262554 KRTAP3-1Q9BYR8 98 aa6.85□□□□□ -1.31
SPTLC1-201ENST00000262554 RPL37P61927 97 aaKnown RBP6.84□□□□□ -1.31
SPTLC1-201ENST00000262554 KRTAP19-1Q8IUB9 90 aa6.84□□□□□ -1.31
SPTLC1-201ENST00000262554 DMBT1Q9UGM3 2413 aaPredicted RBP6.84□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 7.8 ms