RNA–Protein interactions for RNA: ENST00000261415.11

COL4A3BP-201, Transcript of collagen type IV alpha 3 binding protein, humanhuman

TSL 1 (best) BASIC

Gene COL4A3BP, Length 2,262 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A3BP-201ENST00000261415 IGLV7-46A0A075B6I9 117 aa11.67□□□□□ -0.54
COL4A3BP-201ENST00000261415 KRTAP10-1P60331 282 aa11.67□□□□□ -0.54
COL4A3BP-201ENST00000261415 PLAC8Q9NZF1 115 aa11.67□□□□□ -0.54
COL4A3BP-201ENST00000261415 RPL37AP8A6NKH3 93 aa11.67□□□□□ -0.54
COL4A3BP-201ENST00000261415 IGLV1-50A0A075B6I6 118 aa11.66□□□□□ -0.54
COL4A3BP-201ENST00000261415 H3BS24 57 aa11.66□□□□□ -0.54
COL4A3BP-201ENST00000261415 KRTAP29-1A8MX34 341 aaPredicted RBP11.65□□□□□ -0.54
COL4A3BP-201ENST00000261415 DEFB116Q30KQ4 102 aa11.65□□□□□ -0.55
COL4A3BP-201ENST00000261415 Q6ZRX8 168 aa11.65□□□□□ -0.55
COL4A3BP-201ENST00000261415 CASC2Q6XLA1 102 aa11.63□□□□□ -0.55
COL4A3BP-201ENST00000261415 Q6ZSA8 131 aa11.63□□□□□ -0.55
COL4A3BP-201ENST00000261415 LRP1BQ9NZR2 4599 aa11.59□□□□□ -0.55
COL4A3BP-201ENST00000261415 LINC00313P59037 77 aa11.59□□□□□ -0.55
COL4A3BP-201ENST00000261415 DYNC1H1Q14204 4646 aaKnown RBP11.58□□□□□ -0.56
COL4A3BP-201ENST00000261415 KRTAP11-1Q8IUC1 163 aa11.58□□□□□ -0.56
COL4A3BP-201ENST00000261415 LINC01554Q52M75 96 aa11.57□□□□□ -0.56
COL4A3BP-201ENST00000261415 SPAG11AQ6PDA7 123 aa11.57□□□□□ -0.56
COL4A3BP-201ENST00000261415 CIRBP-AS1Q8TBR5 109 aa11.57□□□□□ -0.56
COL4A3BP-201ENST00000261415 SPRR1AP35321 89 aa11.56□□□□□ -0.56
COL4A3BP-201ENST00000261415 REG3GQ6UW15 175 aa11.56□□□□□ -0.56
COL4A3BP-201ENST00000261415 KRTAP4-16G5E9R7 235 aaPredicted RBP11.55□□□□□ -0.56
COL4A3BP-201ENST00000261415 SPINK7P58062 85 aa11.55□□□□□ -0.56
COL4A3BP-201ENST00000261415 ASB16-AS1Q495Z4 193 aa11.55□□□□□ -0.56
COL4A3BP-201ENST00000261415 PLA2G1BP04054 148 aaKnown RBP11.52□□□□□ -0.57
COL4A3BP-201ENST00000261415 A0A087X002 238 aa11.49□□□□□ -0.57
COL4A3BP-201ENST00000261415 IGFL1Q6UW32 110 aa11.47□□□□□ -0.57
COL4A3BP-201ENST00000261415 A0A087WSZ3 146 aa11.46□□□□□ -0.57
COL4A3BP-201ENST00000261415 PSORS1C2Q9UIG4 136 aa11.46□□□□□ -0.57
COL4A3BP-201ENST00000261415 APOBP04114 4563 aaKnown RBP11.46□□□□□ -0.58
COL4A3BP-201ENST00000261415 RPL37AP61513 92 aaKnown RBP11.46□□□□□ -0.58
COL4A3BP-201ENST00000261415 PRAC1Q96KF2 57 aa11.45□□□□□ -0.58
COL4A3BP-201ENST00000261415 PRLHP81277 87 aa11.44□□□□□ -0.58
COL4A3BP-201ENST00000261415 A8MWP4 228 aa11.44□□□□□ -0.58
COL4A3BP-201ENST00000261415 IGLV8-61A0A075B6I0 122 aa11.42□□□□□ -0.58
COL4A3BP-201ENST00000261415 H0Y9J4 135 aa11.4□□□□□ -0.58
COL4A3BP-201ENST00000261415 KRTAP13-1Q8IUC0 172 aa11.39□□□□□ -0.59
COL4A3BP-201ENST00000261415 PCOTHQ58A44 107 aa11.38□□□□□ -0.59
COL4A3BP-201ENST00000261415 TP53AIP1Q9HCN2 124 aa11.38□□□□□ -0.59
COL4A3BP-201ENST00000261415 SRRM2Q9UQ35 2752 aaKnown RBP11.38□□□□□ -0.59
COL4A3BP-201ENST00000261415 EPPK1P58107 5090 aaKnown RBP11.36□□□□□ -0.59
COL4A3BP-201ENST00000261415 HRES1P13985 223 aa11.35□□□□□ -0.59
COL4A3BP-201ENST00000261415 PRR26Q8N8Z3 221 aa11.35□□□□□ -0.59
COL4A3BP-201ENST00000261415 VPS13BQ7Z7G8 4022 aa11.34□□□□□ -0.59
COL4A3BP-201ENST00000261415 A0A0G2JQZ4 141 aa11.33□□□□□ -0.6
COL4A3BP-201ENST00000261415 IGLV7-43P04211 117 aa11.32□□□□□ -0.6
COL4A3BP-201ENST00000261415 LINC00472Q9H8W2 130 aa11.32□□□□□ -0.6
COL4A3BP-201ENST00000261415 ADM2Q7Z4H4 148 aa11.31□□□□□ -0.6
COL4A3BP-201ENST00000261415 ZNF861PO60384 105 aa11.3□□□□□ -0.6
COL4A3BP-201ENST00000261415 MMP24-AS1A0A0U1RRL7 71 aa11.3□□□□□ -0.6
COL4A3BP-201ENST00000261415 SMR3BP02814 79 aaPredicted RBP11.29□□□□□ -0.6
COL4A3BP-201ENST00000261415 CDK2AP2O75956 126 aa11.26□□□□□ -0.61
COL4A3BP-201ENST00000261415 FAT1Q14517 4588 aa11.26□□□□□ -0.61
COL4A3BP-201ENST00000261415 HSPG2P98160 4391 aa11.23□□□□□ -0.61
COL4A3BP-201ENST00000261415 RYR1P21817 5038 aa11.23□□□□□ -0.61
COL4A3BP-201ENST00000261415 KIAA1109Q2LD37 5005 aa11.19□□□□□ -0.62
COL4A3BP-201ENST00000261415 SPATA8Q6RVD6 105 aa11.19□□□□□ -0.62
COL4A3BP-201ENST00000261415 RETNLBQ9BQ08 111 aa11.18□□□□□ -0.62
COL4A3BP-201ENST00000261415 ZNF706Q9Y5V0 76 aaPredicted RBP11.18□□□□□ -0.62
COL4A3BP-201ENST00000261415 SPRR1BP22528 89 aa11.18□□□□□ -0.62
COL4A3BP-201ENST00000261415 KRTAP10-4P60372 401 aaPredicted RBP11.16□□□□□ -0.62
COL4A3BP-201ENST00000261415 LINC00483Q53H64 154 aa11.14□□□□□ -0.63
COL4A3BP-201ENST00000261415 FAM229AH3BQW9 127 aa11.12□□□□□ -0.63
COL4A3BP-201ENST00000261415 ACYP2P14621 99 aa11.11□□□□□ -0.63
COL4A3BP-201ENST00000261415 SPINK6Q6UWN8 80 aa11.1□□□□□ -0.63
COL4A3BP-201ENST00000261415 ANAPC11Q9NYG5 84 aa11.1□□□□□ -0.63
COL4A3BP-201ENST00000261415 Q5VSD8 79 aa11.09□□□□□ -0.63
COL4A3BP-201ENST00000261415 C8orf17Q9NRJ1 99 aa11.08□□□□□ -0.64
COL4A3BP-201ENST00000261415 A0A1B0GU69 56 aa11.07□□□□□ -0.64
COL4A3BP-201ENST00000261415 CSAG1Q6PB30 78 aa11.07□□□□□ -0.64
COL4A3BP-201ENST00000261415 MIR22HGQ0VDD5 57 aa11.05□□□□□ -0.64
COL4A3BP-201ENST00000261415 PKHD1L1Q86WI1 4243 aa11.05□□□□□ -0.64
COL4A3BP-201ENST00000261415 KRTAP17-1Q9BYP8 105 aa11.05□□□□□ -0.64
COL4A3BP-201ENST00000261415 UQCR11O14957 56 aa11.04□□□□□ -0.64
COL4A3BP-201ENST00000261415 KRTAP1-4P0C5Y4 121 aa11.04□□□□□ -0.64
COL4A3BP-201ENST00000261415 IGLV9-49A0A0B4J1Y8 123 aa11.03□□□□□ -0.64
COL4A3BP-201ENST00000261415 Q8N1X5 172 aa11.01□□□□□ -0.65
COL4A3BP-201ENST00000261415 MRPL34Q9BQ48 92 aaKnown RBP11□□□□□ -0.65
COL4A3BP-201ENST00000261415 BIRC6Q9NR09 4857 aa10.98□□□□□ -0.65
COL4A3BP-201ENST00000261415 Q96NJ1 140 aa10.97□□□□□ -0.65
COL4A3BP-201ENST00000261415 A0A1B0GVX0 72 aa10.95□□□□□ -0.66
COL4A3BP-201ENST00000261415 KRTAP13-2Q52LG2 175 aa10.94□□□□□ -0.66
COL4A3BP-201ENST00000261415 IGHV6-1A0A0B4J1U7 121 aa10.92□□□□□ -0.66
COL4A3BP-201ENST00000261415 DMAC1Q96GE9 116 aa10.92□□□□□ -0.66
COL4A3BP-201ENST00000261415 SSBP3-AS1Q7Z2R9 100 aa10.88□□□□□ -0.67
COL4A3BP-201ENST00000261415 TYMSOSQ8TAI1 123 aa10.84□□□□□ -0.67
COL4A3BP-201ENST00000261415 LRP1Q07954 4544 aaKnown RBP10.83□□□□□ -0.68
COL4A3BP-201ENST00000261415 FLG2Q5D862 2391 aaPredicted RBP10.82□□□□□ -0.68
COL4A3BP-201ENST00000261415 KRTAP13-3Q3SY46 172 aa10.82□□□□□ -0.68
COL4A3BP-201ENST00000261415 ROMO1P60602 79 aa10.81□□□□□ -0.68
COL4A3BP-201ENST00000261415 KRTAP4-5Q9BYR2 181 aa10.81□□□□□ -0.68
COL4A3BP-201ENST00000261415 HERC2O95714 4834 aa10.81□□□□□ -0.68
COL4A3BP-201ENST00000261415 FAT3Q8TDW7 4589 aa10.8□□□□□ -0.68
COL4A3BP-201ENST00000261415 Q5W150 140 aa10.77□□□□□ -0.69
COL4A3BP-201ENST00000261415 MYCBP2O75592 4640 aa10.76□□□□□ -0.69
COL4A3BP-201ENST00000261415 TNXBP22105 4242 aa10.73□□□□□ -0.69
COL4A3BP-201ENST00000261415 KRTAP25-1Q3LHN0 102 aa10.73□□□□□ -0.69
COL4A3BP-201ENST00000261415 LINC00304Q8N9R0 145 aa10.72□□□□□ -0.69
COL4A3BP-201ENST00000261415 ABCA13Q86UQ4 5058 aa10.71□□□□□ -0.69
COL4A3BP-201ENST00000261415 NOTCH2NLQ7Z3S9 236 aa10.7□□□□□ -0.7
COL4A3BP-201ENST00000261415 KRTAP10-8P60410 259 aa10.69□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms