RNA–Protein interactions for RNA: ENST00000254950.12

VPS4A-201, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS4A, Length 4,100 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-201ENST00000254950 SMIM26A0A096LP01 95 aa6.73□□□□□ -1.33
VPS4A-201ENST00000254950 SPTSSBQ8NFR3 76 aa6.73□□□□□ -1.33
VPS4A-201ENST00000254950 A0A1B0GVY2 172 aa6.72□□□□□ -1.33
VPS4A-201ENST00000254950 ASB16-AS1Q495Z4 193 aa6.72□□□□□ -1.33
VPS4A-201ENST00000254950 V9GYY9 64 aa6.72□□□□□ -1.33
VPS4A-201ENST00000254950 C7orf65Q6ZTY9 151 aa6.72□□□□□ -1.33
VPS4A-201ENST00000254950 ACYP2P14621 99 aa6.7□□□□□ -1.34
VPS4A-201ENST00000254950 RPS29P62273 56 aaKnown RBP6.69□□□□□ -1.34
VPS4A-201ENST00000254950 H7BZZ5 65 aa6.69□□□□□ -1.34
VPS4A-201ENST00000254950 Q8N1X5 172 aa6.69□□□□□ -1.34
VPS4A-201ENST00000254950 OXTP01178 125 aa6.69□□□□□ -1.34
VPS4A-201ENST00000254950 Q5XG85 94 aa6.68□□□□□ -1.34
VPS4A-201ENST00000254950 KRTAP1-4P0C5Y4 121 aa6.68□□□□□ -1.34
VPS4A-201ENST00000254950 PSPHP1O15172 72 aa6.65□□□□□ -1.34
VPS4A-201ENST00000254950 KRTAP29-1A8MX34 341 aaPredicted RBP6.65□□□□□ -1.35
VPS4A-201ENST00000254950 PRR15LQ9BU68 103 aa6.65□□□□□ -1.35
VPS4A-201ENST00000254950 DNAH9Q9NYC9 4486 aa6.64□□□□□ -1.35
VPS4A-201ENST00000254950 FP248Q71RG6 208 aaPredicted RBP6.64□□□□□ -1.35
VPS4A-201ENST00000254950 RPS28P62857 69 aaKnown RBP6.62□□□□□ -1.35
VPS4A-201ENST00000254950 ZCCHC13Q8WW36 166 aaKnown RBP6.62□□□□□ -1.35
VPS4A-201ENST00000254950 SPANXA2-OT1Q8N9U9 137 aa6.6□□□□□ -1.35
VPS4A-201ENST00000254950 NOTCH2NLQ7Z3S9 236 aa6.6□□□□□ -1.35
VPS4A-201ENST00000254950 COA5Q86WW8 74 aa6.57□□□□□ -1.36
VPS4A-201ENST00000254950 Q5W150 140 aa6.57□□□□□ -1.36
VPS4A-201ENST00000254950 CYP4F30PQ9H0H9 118 aa6.55□□□□□ -1.36
VPS4A-201ENST00000254950 Q8N9P0 234 aaPredicted RBP6.54□□□□□ -1.36
VPS4A-201ENST00000254950 A6NED7 52 aa6.52□□□□□ -1.36
VPS4A-201ENST00000254950 HRES1P13985 223 aa6.52□□□□□ -1.36
VPS4A-201ENST00000254950 ANK2Q01484 3957 aa6.51□□□□□ -1.37
VPS4A-201ENST00000254950 DNHD1Q96M86 4753 aa6.51□□□□□ -1.37
VPS4A-201ENST00000254950 RBM12B-AS1Q9P1G2 102 aa6.51□□□□□ -1.37
VPS4A-201ENST00000254950 SPINK7P58062 85 aa6.49□□□□□ -1.37
VPS4A-201ENST00000254950 COX6B2Q6YFQ2 88 aa6.48□□□□□ -1.37
VPS4A-201ENST00000254950 A0A1B0GU69 56 aa6.47□□□□□ -1.37
VPS4A-201ENST00000254950 SEC61BP60468 96 aaKnown RBP6.47□□□□□ -1.37
VPS4A-201ENST00000254950 A8MUN3 132 aa6.45□□□□□ -1.38
VPS4A-201ENST00000254950 Q75L30 129 aa6.41□□□□□ -1.38
VPS4A-201ENST00000254950 K7ERS5 55 aa6.41□□□□□ -1.38
VPS4A-201ENST00000254950 PLECQ15149 4684 aaKnown RBP6.41□□□□□ -1.38
VPS4A-201ENST00000254950 KRTAP10-8P60410 259 aa6.4□□□□□ -1.38
VPS4A-201ENST00000254950 PRKDCP78527 4128 aaKnown RBP6.39□□□□□ -1.39
VPS4A-201ENST00000254950 A8MU10 97 aa6.38□□□□□ -1.39
VPS4A-201ENST00000254950 DNAH3Q8TD57 4116 aa6.38□□□□□ -1.39
VPS4A-201ENST00000254950 A8MUU9 505 aa6.37□□□□□ -1.39
VPS4A-201ENST00000254950 C20orf166-AS1Q96NR2 134 aa6.36□□□□□ -1.39
VPS4A-201ENST00000254950 H3BS24 57 aa6.36□□□□□ -1.39
VPS4A-201ENST00000254950 RPL37P61927 97 aaKnown RBP6.36□□□□□ -1.39
VPS4A-201ENST00000254950 LYSTQ99698 3801 aa6.35□□□□□ -1.39
VPS4A-201ENST00000254950 ALMS1Q8TCU4 4167 aa6.35□□□□□ -1.39
VPS4A-201ENST00000254950 VPS13DQ5THJ4 4388 aa6.33□□□□□ -1.4
VPS4A-201ENST00000254950 DMAC1Q96GE9 116 aa6.33□□□□□ -1.4
VPS4A-201ENST00000254950 STARD9Q9P2P6 4700 aa6.31□□□□□ -1.4
VPS4A-201ENST00000254950 PMAIP1Q13794 54 aa6.31□□□□□ -1.4
VPS4A-201ENST00000254950 CMYA5Q8N3K9 4069 aa6.3□□□□□ -1.4
VPS4A-201ENST00000254950 PRO0628Q9UI54 55 aa6.3□□□□□ -1.4
VPS4A-201ENST00000254950 DNAH10Q8IVF4 4471 aa6.29□□□□□ -1.4
VPS4A-201ENST00000254950 KRTAP16-1A8MUX0 517 aa6.29□□□□□ -1.4
VPS4A-201ENST00000254950 KRTAP10-4P60372 401 aaPredicted RBP6.27□□□□□ -1.4
VPS4A-201ENST00000254950 XP32Q5T750 250 aa6.27□□□□□ -1.41
VPS4A-201ENST00000254950 DNAH1Q9P2D7 4330 aa6.27□□□□□ -1.41
VPS4A-201ENST00000254950 UQCR11O14957 56 aa6.26□□□□□ -1.41
VPS4A-201ENST00000254950 TPRXLQ17RH7 258 aa6.26□□□□□ -1.41
VPS4A-201ENST00000254950 S4R3F8 94 aa6.26□□□□□ -1.41
VPS4A-201ENST00000254950 Q1T7F1 81 aa6.25□□□□□ -1.41
VPS4A-201ENST00000254950 KRTAP13-3Q3SY46 172 aa6.23□□□□□ -1.41
VPS4A-201ENST00000254950 CSAG1Q6PB30 78 aa6.23□□□□□ -1.41
VPS4A-201ENST00000254950 LINC01558Q9Y6Z2 57 aa6.21□□□□□ -1.42
VPS4A-201ENST00000254950 MIR22HGQ0VDD5 57 aa6.17□□□□□ -1.42
VPS4A-201ENST00000254950 DNAH17Q9UFH2 4485 aa6.16□□□□□ -1.42
VPS4A-201ENST00000254950 H1FX-AS1Q4G0G2 97 aa6.15□□□□□ -1.42
VPS4A-201ENST00000254950 DNAH11Q96DT5 4516 aa6.15□□□□□ -1.43
VPS4A-201ENST00000254950 M0R2T5 61 aa6.15□□□□□ -1.43
VPS4A-201ENST00000254950 MT1HL1P0DM35 61 aa6.15□□□□□ -1.43
VPS4A-201ENST00000254950 DNAH5Q8TE73 4624 aa6.14□□□□□ -1.43
VPS4A-201ENST00000254950 A0A0A0MQY5 61 aa6.12□□□□□ -1.43
VPS4A-201ENST00000254950 A0A1B0GU33 70 aa6.12□□□□□ -1.43
VPS4A-201ENST00000254950 DYNC2H1Q8NCM8 4307 aaKnown RBP6.09□□□□□ -1.43
VPS4A-201ENST00000254950 KRTAP4-5Q9BYR2 181 aa6.08□□□□□ -1.44
VPS4A-201ENST00000254950 Q5VV11 94 aa6.06□□□□□ -1.44
VPS4A-201ENST00000254950 DYNC1H1Q14204 4646 aaKnown RBP6.06□□□□□ -1.44
VPS4A-201ENST00000254950 CDC42SE1Q9NRR8 79 aa6.06□□□□□ -1.44
VPS4A-201ENST00000254950 KMT2AQ03164 3969 aa6.05□□□□□ -1.44
VPS4A-201ENST00000254950 LINC01554Q52M75 96 aa6.05□□□□□ -1.44
VPS4A-201ENST00000254950 A0A0D9SG42 100 aa6.04□□□□□ -1.44
VPS4A-201ENST00000254950 DNAH2Q9P225 4427 aa6.03□□□□□ -1.44
VPS4A-201ENST00000254950 PRAC1Q96KF2 57 aa6.03□□□□□ -1.44
VPS4A-201ENST00000254950 LRP1BQ9NZR2 4599 aa6.02□□□□□ -1.45
VPS4A-201ENST00000254950 DNAH7Q8WXX0 4024 aa6.02□□□□□ -1.45
VPS4A-201ENST00000254950 LCA10Q71F78 164 aa5.99□□□□□ -1.45
VPS4A-201ENST00000254950 SPINT4Q6UDR6 99 aa5.97□□□□□ -1.45
VPS4A-201ENST00000254950 R4GN34 69 aa5.97□□□□□ -1.45
VPS4A-201ENST00000254950 ADM2Q7Z4H4 148 aa5.97□□□□□ -1.45
VPS4A-201ENST00000254950 CRIPTQ9P021 101 aa5.95□□□□□ -1.46
VPS4A-201ENST00000254950 DNAH6Q9C0G6 4158 aa5.95□□□□□ -1.46
VPS4A-201ENST00000254950 FAT1Q14517 4588 aa5.94□□□□□ -1.46
VPS4A-201ENST00000254950 FRAS1Q86XX4 4008 aa5.94□□□□□ -1.46
VPS4A-201ENST00000254950 SACSQ9NZJ4 4579 aa5.94□□□□□ -1.46
VPS4A-201ENST00000254950 FAT2Q9NYQ8 4349 aa5.9□□□□□ -1.46
VPS4A-201ENST00000254950 M0QZ58 72 aa5.9□□□□□ -1.47
VPS4A-201ENST00000254950 RYR2Q92736 4967 aa5.89□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 111.3 ms