RNA–Protein interactions for RNA: ENST00000230085.12

SNX3-201, Transcript of sorting nexin 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SNX3, Length 1,755 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX3-201ENST00000230085 LRP1BQ9NZR2 4599 aa12.48□□□□□ -0.41
SNX3-201ENST00000230085 DYNC1H1Q14204 4646 aaKnown RBP12.47□□□□□ -0.41
SNX3-201ENST00000230085 PHF5AQ7RTV0 110 aaKnown RBP12.46□□□□□ -0.41
SNX3-201ENST00000230085 Q75L30 129 aa12.45□□□□□ -0.42
SNX3-201ENST00000230085 KRTAP10-1P60331 282 aa12.44□□□□□ -0.42
SNX3-201ENST00000230085 Q96NJ1 140 aa12.43□□□□□ -0.42
SNX3-201ENST00000230085 SEC61GP60059 68 aa12.41□□□□□ -0.42
SNX3-201ENST00000230085 LINC00483Q53H64 154 aa12.4□□□□□ -0.42
SNX3-201ENST00000230085 COA5Q86WW8 74 aa12.4□□□□□ -0.42
SNX3-201ENST00000230085 CHTF8P0CG12 524 aa12.37□□□□□ -0.43
SNX3-201ENST00000230085 PLAC8Q9NZF1 115 aa12.37□□□□□ -0.43
SNX3-201ENST00000230085 DNAH8Q96JB1 4490 aa12.34□□□□□ -0.43
SNX3-201ENST00000230085 CHKB-CPT1BH3BT56 60 aa12.34□□□□□ -0.43
SNX3-201ENST00000230085 C8orf17Q9NRJ1 99 aa12.34□□□□□ -0.43
SNX3-201ENST00000230085 PRR15LQ9BU68 103 aa12.33□□□□□ -0.44
SNX3-201ENST00000230085 ATP11AUNQ6ZP68 121 aa12.33□□□□□ -0.44
SNX3-201ENST00000230085 LINC01558Q9Y6Z2 57 aa12.33□□□□□ -0.44
SNX3-201ENST00000230085 APOBP04114 4563 aaKnown RBP12.32□□□□□ -0.44
SNX3-201ENST00000230085 BIRC6Q9NR09 4857 aa12.32□□□□□ -0.44
SNX3-201ENST00000230085 PANO1I0J062 215 aa12.32□□□□□ -0.44
SNX3-201ENST00000230085 Q6ZSA8 131 aa12.31□□□□□ -0.44
SNX3-201ENST00000230085 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP12.31□□□□□ -0.44
SNX3-201ENST00000230085 CD164Q04900 197 aa12.3□□□□□ -0.44
SNX3-201ENST00000230085 A0A1B0GVX0 72 aa12.29□□□□□ -0.44
SNX3-201ENST00000230085 ZNF706Q9Y5V0 76 aaPredicted RBP12.28□□□□□ -0.44
SNX3-201ENST00000230085 KIAA1109Q2LD37 5005 aa12.27□□□□□ -0.45
SNX3-201ENST00000230085 SPACA4Q8TDM5 124 aa12.25□□□□□ -0.45
SNX3-201ENST00000230085 CDC42SE1Q9NRR8 79 aa12.25□□□□□ -0.45
SNX3-201ENST00000230085 CDK2AP2O75956 126 aa12.24□□□□□ -0.45
SNX3-201ENST00000230085 LCA10Q71F78 164 aa12.24□□□□□ -0.45
SNX3-201ENST00000230085 HSPG2P98160 4391 aa12.24□□□□□ -0.45
SNX3-201ENST00000230085 CIRBP-AS1Q8TBR5 109 aa12.23□□□□□ -0.45
SNX3-201ENST00000230085 MRPL34Q9BQ48 92 aaKnown RBP12.23□□□□□ -0.45
SNX3-201ENST00000230085 A8MU10 97 aa12.22□□□□□ -0.45
SNX3-201ENST00000230085 RYR1P21817 5038 aa12.21□□□□□ -0.46
SNX3-201ENST00000230085 KTN1-AS1Q86SY8 53 aa12.2□□□□□ -0.46
SNX3-201ENST00000230085 A6NED7 52 aa12.18□□□□□ -0.46
SNX3-201ENST00000230085 PCOTHQ58A44 107 aa12.18□□□□□ -0.46
SNX3-201ENST00000230085 SMR3BP02814 79 aaPredicted RBP12.15□□□□□ -0.46
SNX3-201ENST00000230085 HRES1P13985 223 aa12.15□□□□□ -0.46
SNX3-201ENST00000230085 IGLV9-49A0A0B4J1Y8 123 aa12.15□□□□□ -0.46
SNX3-201ENST00000230085 A6NN06 94 aa12.15□□□□□ -0.46
SNX3-201ENST00000230085 NDUFS5O43920 106 aa12.15□□□□□ -0.46
SNX3-201ENST00000230085 KRTAP13-3Q3SY46 172 aa12.13□□□□□ -0.47
SNX3-201ENST00000230085 SRRM2Q9UQ35 2752 aaKnown RBP12.13□□□□□ -0.47
SNX3-201ENST00000230085 FAT1Q14517 4588 aa12.12□□□□□ -0.47
SNX3-201ENST00000230085 KRTAP17-1Q9BYP8 105 aa12.12□□□□□ -0.47
SNX3-201ENST00000230085 IGHV6-1A0A0B4J1U7 121 aa12.11□□□□□ -0.47
SNX3-201ENST00000230085 VPS13BQ7Z7G8 4022 aa12.08□□□□□ -0.48
SNX3-201ENST00000230085 ZNF861PO60384 105 aa12.06□□□□□ -0.48
SNX3-201ENST00000230085 SPAG11AQ6PDA7 123 aa12.06□□□□□ -0.48
SNX3-201ENST00000230085 HERC2O95714 4834 aa12.02□□□□□ -0.48
SNX3-201ENST00000230085 Q8N1X5 172 aa12.02□□□□□ -0.48
SNX3-201ENST00000230085 PSORS1C2Q9UIG4 136 aa12.02□□□□□ -0.48
SNX3-201ENST00000230085 C8orf87E5RJ46 101 aa12.02□□□□□ -0.49
SNX3-201ENST00000230085 SPTSSBQ8NFR3 76 aa12.02□□□□□ -0.49
SNX3-201ENST00000230085 A0A087X002 238 aa12□□□□□ -0.49
SNX3-201ENST00000230085 NOTCH2NLQ7Z3S9 236 aa12□□□□□ -0.49
SNX3-201ENST00000230085 FAM229AH3BQW9 127 aa11.99□□□□□ -0.49
SNX3-201ENST00000230085 Q5VSD8 79 aa11.99□□□□□ -0.49
SNX3-201ENST00000230085 ACYP2P14621 99 aa11.96□□□□□ -0.49
SNX3-201ENST00000230085 KRTAP4-5Q9BYR2 181 aa11.96□□□□□ -0.49
SNX3-201ENST00000230085 C7orf65Q6ZTY9 151 aa11.95□□□□□ -0.5
SNX3-201ENST00000230085 Q5W150 140 aa11.95□□□□□ -0.5
SNX3-201ENST00000230085 SPINK7P58062 85 aa11.94□□□□□ -0.5
SNX3-201ENST00000230085 DMAC1Q96GE9 116 aa11.93□□□□□ -0.5
SNX3-201ENST00000230085 KRTAP10-4P60372 401 aaPredicted RBP11.92□□□□□ -0.5
SNX3-201ENST00000230085 PLA2G1BP04054 148 aaKnown RBP11.92□□□□□ -0.5
SNX3-201ENST00000230085 SSBP3-AS1Q7Z2R9 100 aa11.91□□□□□ -0.5
SNX3-201ENST00000230085 RBM12B-AS1Q9P1G2 102 aa11.9□□□□□ -0.51
SNX3-201ENST00000230085 PRR26Q8N8Z3 221 aa11.88□□□□□ -0.51
SNX3-201ENST00000230085 IGLV7-43P04211 117 aa11.85□□□□□ -0.51
SNX3-201ENST00000230085 ANAPC11Q9NYG5 84 aa11.82□□□□□ -0.52
SNX3-201ENST00000230085 ABCA13Q86UQ4 5058 aa11.8□□□□□ -0.52
SNX3-201ENST00000230085 IGKV2-30P06310 120 aa11.77□□□□□ -0.52
SNX3-201ENST00000230085 SPINK6Q6UWN8 80 aa11.76□□□□□ -0.53
SNX3-201ENST00000230085 LINC00313P59037 77 aa11.74□□□□□ -0.53
SNX3-201ENST00000230085 FLG2Q5D862 2391 aaPredicted RBP11.74□□□□□ -0.53
SNX3-201ENST00000230085 PKHD1L1Q86WI1 4243 aa11.73□□□□□ -0.53
SNX3-201ENST00000230085 SPATA8Q6RVD6 105 aa11.72□□□□□ -0.53
SNX3-201ENST00000230085 PCLOQ9Y6V0 5065 aa11.71□□□□□ -0.54
SNX3-201ENST00000230085 MYCBP2O75592 4640 aa11.7□□□□□ -0.54
SNX3-201ENST00000230085 KRTAP16-1A8MUX0 517 aa11.68□□□□□ -0.54
SNX3-201ENST00000230085 LCE2DQ5TA82 110 aaPredicted RBP11.68□□□□□ -0.54
SNX3-201ENST00000230085 LRP1Q07954 4544 aaKnown RBP11.66□□□□□ -0.54
SNX3-201ENST00000230085 A0A1B0GU69 56 aa11.66□□□□□ -0.54
SNX3-201ENST00000230085 FAT3Q8TDW7 4589 aa11.59□□□□□ -0.55
SNX3-201ENST00000230085 UQCR11O14957 56 aa11.56□□□□□ -0.56
SNX3-201ENST00000230085 KRTAP13-2Q52LG2 175 aa11.56□□□□□ -0.56
SNX3-201ENST00000230085 KRTAP1-4P0C5Y4 121 aa11.54□□□□□ -0.56
SNX3-201ENST00000230085 IGKV2D-30A0A075B6S6 120 aa11.52□□□□□ -0.57
SNX3-201ENST00000230085 MIR22HGQ0VDD5 57 aa11.51□□□□□ -0.57
SNX3-201ENST00000230085 TNXBP22105 4242 aa11.48□□□□□ -0.57
SNX3-201ENST00000230085 MT1HL1P0DM35 61 aa11.44□□□□□ -0.58
SNX3-201ENST00000230085 J3QL48 77 aa11.42□□□□□ -0.58
SNX3-201ENST00000230085 KRTAP10-8P60410 259 aa11.41□□□□□ -0.58
SNX3-201ENST00000230085 RETNLBQ9BQ08 111 aa11.39□□□□□ -0.59
SNX3-201ENST00000230085 DMBT1Q9UGM3 2413 aaPredicted RBP11.36□□□□□ -0.59
SNX3-201ENST00000230085 RPS29P62273 56 aaKnown RBP11.36□□□□□ -0.59
SNX3-201ENST00000230085 SPINK1P00995 79 aa11.35□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 40.1 ms