RNA–Protein interactions for RNA: ENST00000224237.9

VIM-201, Transcript of vimentin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VIM, Length 1,868 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-201ENST00000224237 SPINK1P00995 79 aa10.47□□□□□ -0.73
VIM-201ENST00000224237 LINC00304Q8N9R0 145 aa10.46□□□□□ -0.74
VIM-201ENST00000224237 NDUFC1O43677 76 aa10.45□□□□□ -0.74
VIM-201ENST00000224237 RPS28P62857 69 aaKnown RBP10.44□□□□□ -0.74
VIM-201ENST00000224237 SPAG11AQ6PDA7 123 aa10.44□□□□□ -0.74
VIM-201ENST00000224237 H7BZZ5 65 aa10.44□□□□□ -0.74
VIM-201ENST00000224237 TMEM254Q8TBM7 123 aa10.44□□□□□ -0.74
VIM-201ENST00000224237 SNURFQ9Y675 71 aa10.43□□□□□ -0.74
VIM-201ENST00000224237 RPS29P62273 56 aaKnown RBP10.42□□□□□ -0.74
VIM-201ENST00000224237 A0A1B0GVX0 72 aa10.42□□□□□ -0.74
VIM-201ENST00000224237 WFDC13Q8IUB5 93 aa10.4□□□□□ -0.74
VIM-201ENST00000224237 Q8N1X5 172 aa10.4□□□□□ -0.75
VIM-201ENST00000224237 C1orf195Q5TG92 126 aa10.39□□□□□ -0.75
VIM-201ENST00000224237 CASC2Q6XLA1 102 aa10.39□□□□□ -0.75
VIM-201ENST00000224237 IGHV6-1A0A0B4J1U7 121 aa10.38□□□□□ -0.75
VIM-201ENST00000224237 MMP24-AS1A0A0U1RRL7 71 aa10.38□□□□□ -0.75
VIM-201ENST00000224237 KRTAP29-1A8MX34 341 aaPredicted RBP10.38□□□□□ -0.75
VIM-201ENST00000224237 A0A0U1RQV1 116 aa10.38□□□□□ -0.75
VIM-201ENST00000224237 LRP1Q07954 4544 aaKnown RBP10.37□□□□□ -0.75
VIM-201ENST00000224237 C8orf17Q9NRJ1 99 aa10.36□□□□□ -0.75
VIM-201ENST00000224237 FLG2Q5D862 2391 aaPredicted RBP10.35□□□□□ -0.75
VIM-201ENST00000224237 hDV103S1A0JD37 113 aa10.34□□□□□ -0.75
VIM-201ENST00000224237 C5orf47Q569G3 176 aa10.34□□□□□ -0.75
VIM-201ENST00000224237 FAM236DA0A1B0GTK5 79 aa10.34□□□□□ -0.75
VIM-201ENST00000224237 FAM236CP0DP71 79 aa10.34□□□□□ -0.75
VIM-201ENST00000224237 C8orf87E5RJ46 101 aa10.3□□□□□ -0.76
VIM-201ENST00000224237 ATP5EP56381 51 aaPredicted RBP10.28□□□□□ -0.76
VIM-201ENST00000224237 KRTAP4-5Q9BYR2 181 aa10.27□□□□□ -0.76
VIM-201ENST00000224237 TNXBP22105 4242 aa10.27□□□□□ -0.77
VIM-201ENST00000224237 KRTAP10-8P60410 259 aa10.27□□□□□ -0.77
VIM-201ENST00000224237 NOTCH2NLQ7Z3S9 236 aa10.27□□□□□ -0.77
VIM-201ENST00000224237 FAT3Q8TDW7 4589 aa10.26□□□□□ -0.77
VIM-201ENST00000224237 MYCBP2O75592 4640 aa10.26□□□□□ -0.77
VIM-201ENST00000224237 MRPL34Q9BQ48 92 aaKnown RBP10.25□□□□□ -0.77
VIM-201ENST00000224237 ZCCHC13Q8WW36 166 aaKnown RBP10.24□□□□□ -0.77
VIM-201ENST00000224237 LINC00313P59037 77 aa10.23□□□□□ -0.77
VIM-201ENST00000224237 SERP1Q9Y6X1 66 aa10.23□□□□□ -0.77
VIM-201ENST00000224237 MP68P56378 58 aa10.21□□□□□ -0.77
VIM-201ENST00000224237 TP53AIP1Q9HCN2 124 aa10.19□□□□□ -0.78
VIM-201ENST00000224237 BIRC6Q9NR09 4857 aa10.19□□□□□ -0.78
VIM-201ENST00000224237 H3BPC8 53 aa10.19□□□□□ -0.78
VIM-201ENST00000224237 NDUFS5O43920 106 aa10.17□□□□□ -0.78
VIM-201ENST00000224237 OXTP01178 125 aa10.17□□□□□ -0.78
VIM-201ENST00000224237 MT1HL1P0DM35 61 aa10.15□□□□□ -0.79
VIM-201ENST00000224237 RETNLBQ9BQ08 111 aa10.13□□□□□ -0.79
VIM-201ENST00000224237 TRAV22A0A0B4J277 110 aa10.12□□□□□ -0.79
VIM-201ENST00000224237 H0Y9P7 68 aa10.12□□□□□ -0.79
VIM-201ENST00000224237 LINC00208Q96KT6 92 aa10.12□□□□□ -0.79
VIM-201ENST00000224237 KRTAP16-1A8MUX0 517 aa10.11□□□□□ -0.79
VIM-201ENST00000224237 DMBT1Q9UGM3 2413 aaPredicted RBP10.11□□□□□ -0.79
VIM-201ENST00000224237 Q8N9P0 234 aaPredicted RBP10.1□□□□□ -0.79
VIM-201ENST00000224237 HERC2O95714 4834 aa10.09□□□□□ -0.79
VIM-201ENST00000224237 ABCA13Q86UQ4 5058 aa10.07□□□□□ -0.8
VIM-201ENST00000224237 C1orf64Q8NEQ6 169 aa10.04□□□□□ -0.8
VIM-201ENST00000224237 SMIM26A0A096LP01 95 aa10.04□□□□□ -0.8
VIM-201ENST00000224237 FP248Q71RG6 208 aaPredicted RBP10.02□□□□□ -0.81
VIM-201ENST00000224237 CYP4F30PQ9H0H9 118 aa10.02□□□□□ -0.81
VIM-201ENST00000224237 SPANXA2-OT1Q8N9U9 137 aa10□□□□□ -0.81
VIM-201ENST00000224237 C9orf92A6NGG3 77 aa9.99□□□□□ -0.81
VIM-201ENST00000224237 KRTAP13-3Q3SY46 172 aa9.97□□□□□ -0.81
VIM-201ENST00000224237 Q5W150 140 aa9.97□□□□□ -0.81
VIM-201ENST00000224237 C20orf166-AS1Q96NR2 134 aa9.92□□□□□ -0.82
VIM-201ENST00000224237 LOC101927531A0A1B0GV80 90 aa9.91□□□□□ -0.82
VIM-201ENST00000224237 IGLV7-46A0A075B6I9 117 aa9.9□□□□□ -0.82
VIM-201ENST00000224237 A8MUU9 505 aa9.9□□□□□ -0.82
VIM-201ENST00000224237 C4orf26Q17RF5 130 aa9.9□□□□□ -0.82
VIM-201ENST00000224237 PRR4Q16378 134 aa9.89□□□□□ -0.83
VIM-201ENST00000224237 J3QL48 77 aa9.83□□□□□ -0.84
VIM-201ENST00000224237 Q75L30 129 aa9.83□□□□□ -0.84
VIM-201ENST00000224237 PCOTHQ58A44 107 aa9.82□□□□□ -0.84
VIM-201ENST00000224237 IGKV2-30P06310 120 aa9.81□□□□□ -0.84
VIM-201ENST00000224237 MPLKIPQ8TAP9 179 aa9.76□□□□□ -0.85
VIM-201ENST00000224237 Q1T7F1 81 aa9.75□□□□□ -0.85
VIM-201ENST00000224237 PCLOQ9Y6V0 5065 aa9.75□□□□□ -0.85
VIM-201ENST00000224237 IGKV2D-30A0A075B6S6 120 aa9.74□□□□□ -0.85
VIM-201ENST00000224237 XP32Q5T750 250 aa9.74□□□□□ -0.85
VIM-201ENST00000224237 TPRXLQ17RH7 258 aa9.73□□□□□ -0.85
VIM-201ENST00000224237 RPL37P61927 97 aaKnown RBP9.72□□□□□ -0.85
VIM-201ENST00000224237 C7orf65Q6ZTY9 151 aa9.72□□□□□ -0.85
VIM-201ENST00000224237 ATP11AUNQ6ZP68 121 aa9.69□□□□□ -0.86
VIM-201ENST00000224237 V9GYY9 64 aa9.69□□□□□ -0.86
VIM-201ENST00000224237 COA5Q86WW8 74 aa9.68□□□□□ -0.86
VIM-201ENST00000224237 HRES1P13985 223 aa9.67□□□□□ -0.86
VIM-201ENST00000224237 LPAP08519 4548 aa9.65□□□□□ -0.86
VIM-201ENST00000224237 PRO0628Q9UI54 55 aa9.62□□□□□ -0.87
VIM-201ENST00000224237 SPINK7P58062 85 aa9.59□□□□□ -0.87
VIM-201ENST00000224237 ACYP2P14621 99 aa9.57□□□□□ -0.88
VIM-201ENST00000224237 LRP2P98164 4655 aa9.56□□□□□ -0.88
VIM-201ENST00000224237 DMAC1Q96GE9 116 aa9.55□□□□□ -0.88
VIM-201ENST00000224237 HERC1Q15751 4861 aa9.53□□□□□ -0.88
VIM-201ENST00000224237 PSPHP1O15172 72 aa9.51□□□□□ -0.89
VIM-201ENST00000224237 A8MUN3 132 aa9.48□□□□□ -0.89
VIM-201ENST00000224237 BRK1Q8WUW1 75 aa9.45□□□□□ -0.9
VIM-201ENST00000224237 LINC01558Q9Y6Z2 57 aa9.45□□□□□ -0.9
VIM-201ENST00000224237 Q5VV11 94 aa9.44□□□□□ -0.9
VIM-201ENST00000224237 PRR15LQ9BU68 103 aa9.42□□□□□ -0.9
VIM-201ENST00000224237 CHKB-CPT1BH3BT56 60 aa9.4□□□□□ -0.9
VIM-201ENST00000224237 SEC61BP60468 96 aaKnown RBP9.39□□□□□ -0.91
VIM-201ENST00000224237 HMCN2Q8NDA2 5059 aa9.37□□□□□ -0.91
VIM-201ENST00000224237 COX6B2Q6YFQ2 88 aa9.36□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 73.5 ms