RNA–Protein interactions for RNA: ENST00000642141.1

SCN1A-222, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

Gene SCN1A, Length 921 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-222ENST00000642141 TMEM238LA0A1B0GVL6 79 aa5.71□□□□□ -1.5
SCN1A-222ENST00000642141 A6NJY4 79 aa5.71□□□□□ -1.5
SCN1A-222ENST00000642141 RPS29P62273 56 aaKnown RBP5.71□□□□□ -1.5
SCN1A-222ENST00000642141 PCP2Q8IVA1 136 aa5.71□□□□□ -1.5
SCN1A-222ENST00000642141 FABP2P12104 132 aa5.7□□□□□ -1.5
SCN1A-222ENST00000642141 ELOF1P60002 83 aaKnown RBP5.7□□□□□ -1.5
SCN1A-222ENST00000642141 KRTAP9-2Q9BYQ4 174 aa5.7□□□□□ -1.5
SCN1A-222ENST00000642141 LAMTOR3Q9UHA4 124 aa5.7□□□□□ -1.5
SCN1A-222ENST00000642141 A0A0G2JQZ4 141 aa5.69□□□□□ -1.5
SCN1A-222ENST00000642141 H7C2G1 150 aa5.69□□□□□ -1.5
SCN1A-222ENST00000642141 SPRR1BP22528 89 aa5.69□□□□□ -1.5
SCN1A-222ENST00000642141 SEC61BP60468 96 aaKnown RBP5.69□□□□□ -1.5
SCN1A-222ENST00000642141 LYRM7Q5U5X0 104 aa5.69□□□□□ -1.5
SCN1A-222ENST00000642141 MUSTN1Q8IVN3 82 aa5.69□□□□□ -1.5
SCN1A-222ENST00000642141 CEND1Q8N111 149 aa5.69□□□□□ -1.5
SCN1A-222ENST00000642141 A0A1B0GWB2 263 aa5.68□□□□□ -1.5
SCN1A-222ENST00000642141 A0A1W2PPM0 123 aa5.68□□□□□ -1.5
SCN1A-222ENST00000642141 C9orf92A6NGG3 77 aa5.68□□□□□ -1.5
SCN1A-222ENST00000642141 K7EP34 96 aa5.68□□□□□ -1.5
SCN1A-222ENST00000642141 XP32Q5T750 250 aa5.68□□□□□ -1.5
SCN1A-222ENST00000642141 F8W1H4 67 aa5.67□□□□□ -1.5
SCN1A-222ENST00000642141 J3QR89 54 aa5.67□□□□□ -1.5
SCN1A-222ENST00000642141 TEX49A0A1B0GTD5 131 aa5.66□□□□□ -1.5
SCN1A-222ENST00000642141 OCIAD2Q56VL3 154 aa5.66□□□□□ -1.5
SCN1A-222ENST00000642141 IFITM1P13164 125 aa5.65□□□□□ -1.5
SCN1A-222ENST00000642141 LIMD2Q9BT23 127 aa5.65□□□□□ -1.5
SCN1A-222ENST00000642141 TRBV7-6A0A0J9YX20 115 aa5.64□□□□□ -1.51
SCN1A-222ENST00000642141 H3BUT2 72 aa5.64□□□□□ -1.51
SCN1A-222ENST00000642141 SMIM29Q86T20 159 aa5.64□□□□□ -1.51
SCN1A-222ENST00000642141 SMIM11BQ8TCY0 68 aa5.64□□□□□ -1.51
SCN1A-222ENST00000642141 COPS9Q8WXC6 57 aa5.64□□□□□ -1.51
SCN1A-222ENST00000642141 HIST1H4GQ99525 98 aa5.64□□□□□ -1.51
SCN1A-222ENST00000642141 SPCS1Q9Y6A9 102 aa5.64□□□□□ -1.51
SCN1A-222ENST00000642141 LINC01547P58512 204 aaPredicted RBP5.63□□□□□ -1.51
SCN1A-222ENST00000642141 Q6ZVH6 145 aa5.63□□□□□ -1.51
SCN1A-222ENST00000642141 TRBV20-1A0A075B6N2 111 aa5.62□□□□□ -1.51
SCN1A-222ENST00000642141 PCOTHQ58A44 107 aa5.62□□□□□ -1.51
SCN1A-222ENST00000642141 TRAV13-2A0A0B4J235 113 aa5.61□□□□□ -1.51
SCN1A-222ENST00000642141 FXYD2P54710 66 aa5.61□□□□□ -1.51
SCN1A-222ENST00000642141 NHP2Q9NX24 153 aaKnown RBP5.61□□□□□ -1.51
SCN1A-222ENST00000642141 IGLV5-48A0A075B6I7 105 aa5.6□□□□□ -1.51
SCN1A-222ENST00000642141 CD164Q04900 197 aa5.6□□□□□ -1.51
SCN1A-222ENST00000642141 VPS25Q9BRG1 176 aa5.6□□□□□ -1.51
SCN1A-222ENST00000642141 IGLV8-61A0A075B6I0 122 aa5.59□□□□□ -1.51
SCN1A-222ENST00000642141 A4D1N5 150 aa5.59□□□□□ -1.51
SCN1A-222ENST00000642141 SCGB1A1P11684 91 aa5.59□□□□□ -1.51
SCN1A-222ENST00000642141 PCP4P48539 62 aa5.59□□□□□ -1.51
SCN1A-222ENST00000642141 C1orf195Q5TG92 126 aa5.59□□□□□ -1.51
SCN1A-222ENST00000642141 RAB37Q96AX2 223 aa5.58□□□□□ -1.52
SCN1A-222ENST00000642141 H3BMG7 143 aa5.56□□□□□ -1.52
SCN1A-222ENST00000642141 LINC00575Q6W349 94 aa5.56□□□□□ -1.52
SCN1A-222ENST00000642141 PRO1854Q9UHT4 67 aa5.56□□□□□ -1.52
SCN1A-222ENST00000642141 A0A0B4J2C4 111 aa5.55□□□□□ -1.52
SCN1A-222ENST00000642141 F8WEM9 126 aa5.55□□□□□ -1.52
SCN1A-222ENST00000642141 Q6ZQY7 126 aa5.55□□□□□ -1.52
SCN1A-222ENST00000642141 hADV29S1A0JD25 119 aa5.54□□□□□ -1.52
SCN1A-222ENST00000642141 KRTAP19-2Q3LHN2 52 aa5.53□□□□□ -1.52
SCN1A-222ENST00000642141 Q5XG85 94 aa5.53□□□□□ -1.52
SCN1A-222ENST00000642141 KRTAP9-6A0A140TA67 174 aa5.52□□□□□ -1.53
SCN1A-222ENST00000642141 TCL1BO95988 128 aa5.52□□□□□ -1.53
SCN1A-222ENST00000642141 MTURNQ8N3F0 131 aa5.52□□□□□ -1.53
SCN1A-222ENST00000642141 COX6CP09669 75 aa5.51□□□□□ -1.53
SCN1A-222ENST00000642141 IGFL1Q6UW32 110 aa5.51□□□□□ -1.53
SCN1A-222ENST00000642141 SIGMAR1Q99720 223 aa5.51□□□□□ -1.53
SCN1A-222ENST00000642141 PRO0461Q9UI25 63 aa5.51□□□□□ -1.53
SCN1A-222ENST00000642141 K7ERJ3 54 aa5.5□□□□□ -1.53
SCN1A-222ENST00000642141 CFC1BP0CG36 223 aa5.5□□□□□ -1.53
SCN1A-222ENST00000642141 CFC1P0CG37 223 aa5.5□□□□□ -1.53
SCN1A-222ENST00000642141 TEN1Q86WV5 123 aa5.5□□□□□ -1.53
SCN1A-222ENST00000642141 PPDPFLQ8WWR9 84 aa5.5□□□□□ -1.53
SCN1A-222ENST00000642141 RPL37P61927 97 aaKnown RBP5.49□□□□□ -1.53
SCN1A-222ENST00000642141 MT1HP80294 61 aa5.49□□□□□ -1.53
SCN1A-222ENST00000642141 TRBV7-7A0A0K0K1E9 115 aa5.48□□□□□ -1.53
SCN1A-222ENST00000642141 SCGB1C2P0DMR2 95 aa5.48□□□□□ -1.53
SCN1A-222ENST00000642141 ATXN8Q156A1 80 aa5.48□□□□□ -1.53
SCN1A-222ENST00000642141 Q6JHZ5 121 aa5.48□□□□□ -1.53
SCN1A-222ENST00000642141 CLEC2BQ92478 149 aa5.48□□□□□ -1.53
SCN1A-222ENST00000642141 PSMB2P49721 201 aa5.47□□□□□ -1.53
SCN1A-222ENST00000642141 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP5.47□□□□□ -1.53
SCN1A-222ENST00000642141 NAA38Q9BRA0 125 aaKnown RBP5.47□□□□□ -1.53
SCN1A-222ENST00000642141 ETDBQ3ZM63 59 aa5.46□□□□□ -1.54
SCN1A-222ENST00000642141 OBSCN-AS1Q96MR7 158 aa5.46□□□□□ -1.54
SCN1A-222ENST00000642141 H3BT86 120 aa5.45□□□□□ -1.54
SCN1A-222ENST00000642141 COX6B2Q6YFQ2 88 aa5.44□□□□□ -1.54
SCN1A-222ENST00000642141 FAM218AQ96MZ4 157 aa5.44□□□□□ -1.54
SCN1A-222ENST00000642141 M0R2T5 61 aa5.43□□□□□ -1.54
SCN1A-222ENST00000642141 ANKRD29Q8N6D5 301 aa5.43□□□□□ -1.54
SCN1A-222ENST00000642141 FAM240AA0A1B0GVK7 77 aa5.42□□□□□ -1.54
SCN1A-222ENST00000642141 LST1O00453 97 aa5.42□□□□□ -1.54
SCN1A-222ENST00000642141 FSIP2Q5CZC0 6907 aa5.41□□□□□ -1.54
SCN1A-222ENST00000642141 A0A1B0GV72 72 aa5.41□□□□□ -1.54
SCN1A-222ENST00000642141 ACYP1P07311 99 aa5.41□□□□□ -1.54
SCN1A-222ENST00000642141 NDUFV3P56181 108 aaKnown RBP5.41□□□□□ -1.54
SCN1A-222ENST00000642141 Q6Q795 121 aa5.41□□□□□ -1.54
SCN1A-222ENST00000642141 H0YGX0 51 aa5.4□□□□□ -1.54
SCN1A-222ENST00000642141 SNCGO76070 127 aa5.4□□□□□ -1.54
SCN1A-222ENST00000642141 ATP11AUNQ6ZP68 121 aa5.4□□□□□ -1.54
SCN1A-222ENST00000642141 Q96NJ1 140 aa5.4□□□□□ -1.54
SCN1A-222ENST00000642141 C9JAW5 83 aa5.39□□□□□ -1.55
SCN1A-222ENST00000642141 TRACP01848 142 aa5.39□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 12.8 ms