RNA–Protein interactions for RNA: ENST00000638142.2

SYNGAP1-227, Transcript of synaptic Ras GTPase activating protein 1, humanhuman

TSL 5

Gene SYNGAP1, Length 2,499 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNGAP1-227ENST00000638142 IGLV2-33A0A075B6J2 118 aaPredicted RBP12.63□□□□□ -0.39
SYNGAP1-227ENST00000638142 K7EIL1 84 aa12.62□□□□□ -0.39
SYNGAP1-227ENST00000638142 C1orf64Q8NEQ6 169 aa12.62□□□□□ -0.39
SYNGAP1-227ENST00000638142 KRTAP1-5Q9BYS1 174 aa12.62□□□□□ -0.39
SYNGAP1-227ENST00000638142 A0A087WSZ3 146 aa12.61□□□□□ -0.39
SYNGAP1-227ENST00000638142 HUWE1Q7Z6Z7 4374 aaKnown RBP12.59□□□□□ -0.39
SYNGAP1-227ENST00000638142 UBE2AP49459 152 aa12.59□□□□□ -0.39
SYNGAP1-227ENST00000638142 CYP4F30PQ9H0H9 118 aa12.59□□□□□ -0.39
SYNGAP1-227ENST00000638142 PKIGQ9Y2B9 76 aa12.58□□□□□ -0.4
SYNGAP1-227ENST00000638142 Q1T7F1 81 aa12.57□□□□□ -0.4
SYNGAP1-227ENST00000638142 DEFB116Q30KQ4 102 aa12.57□□□□□ -0.4
SYNGAP1-227ENST00000638142 H0Y9J4 135 aa12.55□□□□□ -0.4
SYNGAP1-227ENST00000638142 C14orf177Q52M58 125 aa12.55□□□□□ -0.4
SYNGAP1-227ENST00000638142 SPRR1BP22528 89 aa12.55□□□□□ -0.4
SYNGAP1-227ENST00000638142 NDUFB1O75438 58 aa12.54□□□□□ -0.4
SYNGAP1-227ENST00000638142 WFDC13Q8IUB5 93 aa12.53□□□□□ -0.4
SYNGAP1-227ENST00000638142 PHF5AQ7RTV0 110 aaKnown RBP12.52□□□□□ -0.41
SYNGAP1-227ENST00000638142 DNHD1Q96M86 4753 aa12.51□□□□□ -0.41
SYNGAP1-227ENST00000638142 NBEAL1Q6ZS30 2694 aa12.5□□□□□ -0.41
SYNGAP1-227ENST00000638142 LRCOL1A6NCL2 159 aa12.5□□□□□ -0.41
SYNGAP1-227ENST00000638142 MP68P56378 58 aa12.5□□□□□ -0.41
SYNGAP1-227ENST00000638142 KRTAP11-1Q8IUC1 163 aa12.5□□□□□ -0.41
SYNGAP1-227ENST00000638142 MDFIQ99750 246 aa12.5□□□□□ -0.41
SYNGAP1-227ENST00000638142 KRTAP29-1A8MX34 341 aaPredicted RBP12.5□□□□□ -0.41
SYNGAP1-227ENST00000638142 UBE2DNLQ8IWF7 75 aa12.5□□□□□ -0.41
SYNGAP1-227ENST00000638142 CHTF8P0CG12 524 aa12.49□□□□□ -0.41
SYNGAP1-227ENST00000638142 RPL37AP61513 92 aaKnown RBP12.48□□□□□ -0.41
SYNGAP1-227ENST00000638142 DNAH10Q8IVF4 4471 aa12.47□□□□□ -0.41
SYNGAP1-227ENST00000638142 PRR15Q8IV56 129 aa12.46□□□□□ -0.41
SYNGAP1-227ENST00000638142 TRAV22A0A0B4J277 110 aa12.46□□□□□ -0.42
SYNGAP1-227ENST00000638142 C1orf195Q5TG92 126 aa12.46□□□□□ -0.42
SYNGAP1-227ENST00000638142 APLNQ9ULZ1 77 aa12.45□□□□□ -0.42
SYNGAP1-227ENST00000638142 PRR4Q16378 134 aa12.44□□□□□ -0.42
SYNGAP1-227ENST00000638142 CASC2Q6XLA1 102 aa12.44□□□□□ -0.42
SYNGAP1-227ENST00000638142 A8MWP4 228 aa12.44□□□□□ -0.42
SYNGAP1-227ENST00000638142 KRTAP21-3Q3LHN1 58 aa12.44□□□□□ -0.42
SYNGAP1-227ENST00000638142 C9orf163Q8N9P6 203 aa12.44□□□□□ -0.42
SYNGAP1-227ENST00000638142 LINC00472Q9H8W2 130 aa12.44□□□□□ -0.42
SYNGAP1-227ENST00000638142 B9D2Q9BPU9 175 aa12.43□□□□□ -0.42
SYNGAP1-227ENST00000638142 H3BPC8 53 aa12.42□□□□□ -0.42
SYNGAP1-227ENST00000638142 LINC00208Q96KT6 92 aa12.4□□□□□ -0.42
SYNGAP1-227ENST00000638142 SPANXA2-OT1Q8N9U9 137 aa12.38□□□□□ -0.43
SYNGAP1-227ENST00000638142 DNAH9Q9NYC9 4486 aa12.38□□□□□ -0.43
SYNGAP1-227ENST00000638142 H0Y9P7 68 aa12.38□□□□□ -0.43
SYNGAP1-227ENST00000638142 LYSTQ99698 3801 aa12.38□□□□□ -0.43
SYNGAP1-227ENST00000638142 V9GYY9 64 aa12.37□□□□□ -0.43
SYNGAP1-227ENST00000638142 PSPHP1O15172 72 aa12.36□□□□□ -0.43
SYNGAP1-227ENST00000638142 KRTAP13-1Q8IUC0 172 aa12.35□□□□□ -0.43
SYNGAP1-227ENST00000638142 STAB2Q8WWQ8 2551 aa12.35□□□□□ -0.43
SYNGAP1-227ENST00000638142 SRRM2Q9UQ35 2752 aaKnown RBP12.3□□□□□ -0.44
SYNGAP1-227ENST00000638142 NBDYA0A0U1RRE5 68 aa12.3□□□□□ -0.44
SYNGAP1-227ENST00000638142 MMP24-AS1A0A0U1RRL7 71 aa12.29□□□□□ -0.44
SYNGAP1-227ENST00000638142 PANO1I0J062 215 aa12.29□□□□□ -0.44
SYNGAP1-227ENST00000638142 MGAM2Q2M2H8 2515 aa12.28□□□□□ -0.44
SYNGAP1-227ENST00000638142 Q6ZRN7 208 aaPredicted RBP12.27□□□□□ -0.45
SYNGAP1-227ENST00000638142 A8MUN3 132 aa12.27□□□□□ -0.45
SYNGAP1-227ENST00000638142 DYNC2H1Q8NCM8 4307 aaKnown RBP12.26□□□□□ -0.45
SYNGAP1-227ENST00000638142 COL7A1Q02388 2944 aa12.26□□□□□ -0.45
SYNGAP1-227ENST00000638142 SPACA4Q8TDM5 124 aa12.23□□□□□ -0.45
SYNGAP1-227ENST00000638142 Q5VV11 94 aa12.22□□□□□ -0.45
SYNGAP1-227ENST00000638142 Q96NJ1 140 aa12.21□□□□□ -0.45
SYNGAP1-227ENST00000638142 IGLV9-49A0A0B4J1Y8 123 aa12.21□□□□□ -0.45
SYNGAP1-227ENST00000638142 Q8N9P0 234 aaPredicted RBP12.21□□□□□ -0.45
SYNGAP1-227ENST00000638142 LIMD2Q9BT23 127 aa12.21□□□□□ -0.45
SYNGAP1-227ENST00000638142 LINC00483Q53H64 154 aa12.2□□□□□ -0.46
SYNGAP1-227ENST00000638142 MOBPQ13875 183 aa12.19□□□□□ -0.46
SYNGAP1-227ENST00000638142 ASB16-AS1Q495Z4 193 aa12.19□□□□□ -0.46
SYNGAP1-227ENST00000638142 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP12.19□□□□□ -0.46
SYNGAP1-227ENST00000638142 NUPR2A6NF83 97 aa12.19□□□□□ -0.46
SYNGAP1-227ENST00000638142 TP53AIP1Q9HCN2 124 aa12.18□□□□□ -0.46
SYNGAP1-227ENST00000638142 DNAH7Q8WXX0 4024 aa12.17□□□□□ -0.46
SYNGAP1-227ENST00000638142 ZNF706Q9Y5V0 76 aaPredicted RBP12.16□□□□□ -0.46
SYNGAP1-227ENST00000638142 PMAIP1Q13794 54 aa12.15□□□□□ -0.46
SYNGAP1-227ENST00000638142 IGLV7-46A0A075B6I9 117 aa12.15□□□□□ -0.46
SYNGAP1-227ENST00000638142 FBN3Q75N90 2809 aa12.14□□□□□ -0.47
SYNGAP1-227ENST00000638142 C8orf17Q9NRJ1 99 aa12.13□□□□□ -0.47
SYNGAP1-227ENST00000638142 CSMD3Q7Z407 3707 aa12.13□□□□□ -0.47
SYNGAP1-227ENST00000638142 TENM2Q9NT68 2774 aa12.13□□□□□ -0.47
SYNGAP1-227ENST00000638142 PLECQ15149 4684 aaKnown RBP12.11□□□□□ -0.47
SYNGAP1-227ENST00000638142 COA5Q86WW8 74 aa12.11□□□□□ -0.47
SYNGAP1-227ENST00000638142 WWC2-AS2Q96NR7 200 aa12.1□□□□□ -0.47
SYNGAP1-227ENST00000638142 CHKB-CPT1BH3BT56 60 aa12.1□□□□□ -0.47
SYNGAP1-227ENST00000638142 A0A087WTM6 91 aa12.09□□□□□ -0.47
SYNGAP1-227ENST00000638142 Q6ZR54 194 aa12.09□□□□□ -0.47
SYNGAP1-227ENST00000638142 PRR15LQ9BU68 103 aa12.09□□□□□ -0.47
SYNGAP1-227ENST00000638142 A0A1B0GVX0 72 aa12.09□□□□□ -0.47
SYNGAP1-227ENST00000638142 IGLV5-52A0A0A0MRZ9 124 aa12.07□□□□□ -0.48
SYNGAP1-227ENST00000638142 SEC61GP60059 68 aa12.06□□□□□ -0.48
SYNGAP1-227ENST00000638142 PSORS1C2Q9UIG4 136 aa12.06□□□□□ -0.48
SYNGAP1-227ENST00000638142 LOC101927531A0A1B0GV80 90 aa12.05□□□□□ -0.48
SYNGAP1-227ENST00000638142 A8MU10 97 aa12.05□□□□□ -0.48
SYNGAP1-227ENST00000638142 IGHV6-1A0A0B4J1U7 121 aa12.05□□□□□ -0.48
SYNGAP1-227ENST00000638142 CDK2AP2O75956 126 aa12.05□□□□□ -0.48
SYNGAP1-227ENST00000638142 Q75L30 129 aa12.04□□□□□ -0.48
SYNGAP1-227ENST00000638142 PCOTHQ58A44 107 aa12.03□□□□□ -0.48
SYNGAP1-227ENST00000638142 RTL8CO15255 209 aa12.02□□□□□ -0.48
SYNGAP1-227ENST00000638142 ZNF861PO60384 105 aa12.02□□□□□ -0.48
SYNGAP1-227ENST00000638142 CD164Q04900 197 aa12.02□□□□□ -0.48
SYNGAP1-227ENST00000638142 MRPL34Q9BQ48 92 aaKnown RBP12.01□□□□□ -0.49
SYNGAP1-227ENST00000638142 PLAC8Q9NZF1 115 aa12.01□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 10.8 ms