RNA–Protein interactions for RNA: ENST00000637239.2

TCF4-285, Transcript of transcription factor 4, human

TSL 5

Gene TCF4, Length 7,771 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TCF4-285	ENST00000637239	GIG44	P09565	113 aa	Predicted RBP	4.22	□□□□□ -1.73
TCF4-285	ENST00000637239	NBEAL1	Q6ZS30	2694 aa		4.22	□□□□□ -1.73
TCF4-285	ENST00000637239	CDC42SE1	Q9NRR8	79 aa		4.21	□□□□□ -1.74
TCF4-285	ENST00000637239	ITPR2	Q14571	2701 aa		4.2	□□□□□ -1.74
TCF4-285	ENST00000637239		A0A0D9SG42	100 aa		4.2	□□□□□ -1.74
TCF4-285	ENST00000637239	CAMK2N1	Q7Z7J9	78 aa		4.2	□□□□□ -1.74
TCF4-285	ENST00000637239		Q1T7F1	81 aa		4.19	□□□□□ -1.74
TCF4-285	ENST00000637239	EIF4EBP3	O60516	100 aa	Predicted RBP	4.19	□□□□□ -1.74
TCF4-285	ENST00000637239	LINC00483	Q53H64	154 aa		4.19	□□□□□ -1.74
TCF4-285	ENST00000637239	PLAC8	Q9NZF1	115 aa		4.19	□□□□□ -1.74
TCF4-285	ENST00000637239	FLNC	Q14315	2725 aa		4.18	□□□□□ -1.74
TCF4-285	ENST00000637239	RANBP2	P49792	3224 aa	Known RBP	4.18	□□□□□ -1.74
TCF4-285	ENST00000637239		S4R3F8	94 aa		4.18	□□□□□ -1.74
TCF4-285	ENST00000637239	NSD1	Q96L73	2696 aa	Predicted RBP	4.17	□□□□□ -1.74
TCF4-285	ENST00000637239		Q8N1X5	172 aa		4.17	□□□□□ -1.74
TCF4-285	ENST00000637239		Q5XG85	94 aa		4.17	□□□□□ -1.74
TCF4-285	ENST00000637239	IGLV5-48	A0A075B6I7	105 aa		4.17	□□□□□ -1.74
TCF4-285	ENST00000637239	SPANXA2-OT1	Q8N9U9	137 aa		4.16	□□□□□ -1.74
TCF4-285	ENST00000637239	CSAG1	Q6PB30	78 aa		4.16	□□□□□ -1.74
TCF4-285	ENST00000637239	CELSR3	Q9NYQ7	3312 aa		4.15	□□□□□ -1.74
TCF4-285	ENST00000637239	AFDN-AS1	Q9Y6Z5	254 aa	Predicted RBP	4.15	□□□□□ -1.74
TCF4-285	ENST00000637239	AKAP13	Q12802	2813 aa		4.14	□□□□□ -1.75
TCF4-285	ENST00000637239	FP248	Q71RG6	208 aa	Predicted RBP	4.14	□□□□□ -1.75
TCF4-285	ENST00000637239	FAM104A	Q969W3	186 aa		4.13	□□□□□ -1.75
TCF4-285	ENST00000637239	HTT	P42858	3142 aa		4.13	□□□□□ -1.75
TCF4-285	ENST00000637239	MAP1A	P78559	2803 aa	Predicted RBP	4.12	□□□□□ -1.75
TCF4-285	ENST00000637239		A0A0C4DFX4	3053 aa		4.12	□□□□□ -1.75
TCF4-285	ENST00000637239	UBR5	O95071	2799 aa	Predicted RBP	4.12	□□□□□ -1.75
TCF4-285	ENST00000637239	PLAC4	Q8WY50	150 aa		4.11	□□□□□ -1.75
TCF4-285	ENST00000637239	BRCA2	P51587	3418 aa		4.11	□□□□□ -1.75
TCF4-285	ENST00000637239	STAB2	Q8WWQ8	2551 aa		4.11	□□□□□ -1.75
TCF4-285	ENST00000637239		Q75L30	129 aa		4.1	□□□□□ -1.75
TCF4-285	ENST00000637239	MGA	Q8IWI9	3026 aa		4.1	□□□□□ -1.75
TCF4-285	ENST00000637239	TRIO	O75962	3097 aa		4.1	□□□□□ -1.75
TCF4-285	ENST00000637239	REV3L	O60673	3130 aa		4.1	□□□□□ -1.75
TCF4-285	ENST00000637239	ZCCHC13	Q8WW36	166 aa	Known RBP	4.1	□□□□□ -1.75
TCF4-285	ENST00000637239		A0A1W2PNM2	257 aa		4.09	□□□□□ -1.75
TCF4-285	ENST00000637239	PRUNE2	Q8WUY3	3088 aa		4.09	□□□□□ -1.75
TCF4-285	ENST00000637239	DNAH14	Q0VDD8	3507 aa		4.09	□□□□□ -1.75
TCF4-285	ENST00000637239	LUZP6	Q538Z0	58 aa		4.09	□□□□□ -1.75
TCF4-285	ENST00000637239	HIVEP1	P15822	2718 aa		4.09	□□□□□ -1.75
TCF4-285	ENST00000637239	OCR1	Q9BZK8	76 aa		4.09	□□□□□ -1.75
TCF4-285	ENST00000637239	KRTAP10-1	P60331	282 aa		4.08	□□□□□ -1.76
TCF4-285	ENST00000637239	CYSTM1	Q9H1C7	97 aa		4.07	□□□□□ -1.76
TCF4-285	ENST00000637239	LAMA3	Q16787	3333 aa		4.05	□□□□□ -1.76
TCF4-285	ENST00000637239	PRAC1	Q96KF2	57 aa		4.05	□□□□□ -1.76
TCF4-285	ENST00000637239		R4GN34	69 aa		4.04	□□□□□ -1.76
TCF4-285	ENST00000637239	ITPR1	Q14643	2758 aa		4.04	□□□□□ -1.76
TCF4-285	ENST00000637239	KRTAP10-2	P60368	255 aa		4.04	□□□□□ -1.76
TCF4-285	ENST00000637239	DMBT1	Q9UGM3	2413 aa	Predicted RBP	4.04	□□□□□ -1.76
TCF4-285	ENST00000637239	TENM4	Q6N022	2769 aa		4.04	□□□□□ -1.76
TCF4-285	ENST00000637239	VPS13A	Q96RL7	3174 aa		4.03	□□□□□ -1.76
TCF4-285	ENST00000637239		Q5VV11	94 aa		4.03	□□□□□ -1.76
TCF4-285	ENST00000637239		Q8N9P0	234 aa	Predicted RBP	4.03	□□□□□ -1.76
TCF4-285	ENST00000637239	FREM2	Q5SZK8	3169 aa		4.03	□□□□□ -1.77
TCF4-285	ENST00000637239	CDH23	Q9H251	3354 aa		4.02	□□□□□ -1.77
TCF4-285	ENST00000637239		A0A1B0GU33	70 aa		4.02	□□□□□ -1.77
TCF4-285	ENST00000637239	LINC01558	Q9Y6Z2	57 aa		4.01	□□□□□ -1.77
TCF4-285	ENST00000637239	DMAC1	Q96GE9	116 aa		3.99	□□□□□ -1.77
TCF4-285	ENST00000637239	SPINK7	P58062	85 aa		3.99	□□□□□ -1.77
TCF4-285	ENST00000637239	TNRC18	O15417	2968 aa	Predicted RBP	3.98	□□□□□ -1.77
TCF4-285	ENST00000637239		A0A0A0MQY5	61 aa		3.98	□□□□□ -1.77
TCF4-285	ENST00000637239	APC	P25054	2843 aa		3.98	□□□□□ -1.77
TCF4-285	ENST00000637239	UNC80	Q8N2C7	3258 aa		3.98	□□□□□ -1.77
TCF4-285	ENST00000637239	WDFY4	Q6ZS81	3184 aa		3.97	□□□□□ -1.77
TCF4-285	ENST00000637239		Q6ZR54	194 aa		3.97	□□□□□ -1.77
TCF4-285	ENST00000637239	NIPBL	Q6KC79	2804 aa	eCLIP	3.96	□□□□□ -1.78
TCF4-285	ENST00000637239	UTP20	O75691	2785 aa	Known RBP	3.95	□□□□□ -1.78
TCF4-285	ENST00000637239	FRY	Q5TBA9	3013 aa		3.95	□□□□□ -1.78
TCF4-285	ENST00000637239	FRYL	O94915	3013 aa		3.94	□□□□□ -1.78
TCF4-285	ENST00000637239		M0QZ58	72 aa		3.94	□□□□□ -1.78
TCF4-285	ENST00000637239	COL6A3	P12111	3177 aa		3.94	□□□□□ -1.78
TCF4-285	ENST00000637239	SZT2	Q5T011	3432 aa		3.94	□□□□□ -1.78
TCF4-285	ENST00000637239	MMP24-AS1	A0A0U1RRL7	71 aa		3.94	□□□□□ -1.78
TCF4-285	ENST00000637239	LAMA1	P25391	3075 aa		3.93	□□□□□ -1.78
TCF4-285	ENST00000637239	KRTAP1-5	Q9BYS1	174 aa		3.93	□□□□□ -1.78
TCF4-285	ENST00000637239	RPS29	P62273	56 aa	Known RBP	3.93	□□□□□ -1.78
TCF4-285	ENST00000637239	SPRR1B	P22528	89 aa		3.93	□□□□□ -1.78
TCF4-285	ENST00000637239		Q5W150	140 aa		3.92	□□□□□ -1.78
TCF4-285	ENST00000637239	SPRR1A	P35321	89 aa		3.91	□□□□□ -1.78
TCF4-285	ENST00000637239	ASH1L	Q9NR48	2969 aa	Known RBP	3.91	□□□□□ -1.78
TCF4-285	ENST00000637239		Q8NDZ9	215 aa		3.91	□□□□□ -1.78
TCF4-285	ENST00000637239	ASB16-AS1	Q495Z4	193 aa		3.9	□□□□□ -1.78
TCF4-285	ENST00000637239	SPEG	Q15772	3267 aa		3.89	□□□□□ -1.79
TCF4-285	ENST00000637239	KALRN	O60229	2985 aa		3.89	□□□□□ -1.79
TCF4-285	ENST00000637239	ADM2	Q7Z4H4	148 aa		3.89	□□□□□ -1.79
TCF4-285	ENST00000637239	KRTAP16-1	A8MUX0	517 aa		3.89	□□□□□ -1.79
TCF4-285	ENST00000637239	H1FX-AS1	Q4G0G2	97 aa		3.89	□□□□□ -1.79
TCF4-285	ENST00000637239	VCAN	P13611	3396 aa		3.88	□□□□□ -1.79
TCF4-285	ENST00000637239	LINC00472	Q9H8W2	130 aa		3.88	□□□□□ -1.79
TCF4-285	ENST00000637239	LRBA	P50851	2863 aa		3.85	□□□□□ -1.79
TCF4-285	ENST00000637239	USP34	Q70CQ2	3546 aa		3.85	□□□□□ -1.79
TCF4-285	ENST00000637239	ROMO1	P60602	79 aa		3.85	□□□□□ -1.79
TCF4-285	ENST00000637239	C20orf166-AS1	Q96NR2	134 aa		3.85	□□□□□ -1.79
TCF4-285	ENST00000637239	CFAP47	Q6ZTR5	3102 aa		3.84	□□□□□ -1.79
TCF4-285	ENST00000637239		A6NN06	94 aa		3.83	□□□□□ -1.8
TCF4-285	ENST00000637239	KRTAP26-1	Q6PEX3	210 aa		3.83	□□□□□ -1.8
TCF4-285	ENST00000637239	RPL37	P61927	97 aa	Known RBP	3.83	□□□□□ -1.8
TCF4-285	ENST00000637239	NBEA	Q8NFP9	2946 aa		3.83	□□□□□ -1.8
TCF4-285	ENST00000637239	COL12A1	Q99715	3063 aa		3.82	□□□□□ -1.8

Retrieved 100 of 20,778 RNA–protein pairs in 78.9 ms