RNA–Protein interactions for RNA: ENST00000636759.1

SCN1A-213, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 3,606 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-213ENST00000636759 OXLD1Q5BKU9 147 aa4.4□□□□□ -1.71
SCN1A-213ENST00000636759 PLAC8Q9NZF1 115 aa4.39□□□□□ -1.71
SCN1A-213ENST00000636759 ITPR2Q14571 2701 aa4.39□□□□□ -1.71
SCN1A-213ENST00000636759 EGFEM1PQ0D2K5 195 aa4.38□□□□□ -1.71
SCN1A-213ENST00000636759 H0Y9J4 135 aa4.38□□□□□ -1.71
SCN1A-213ENST00000636759 A0A087WSZ3 146 aa4.37□□□□□ -1.71
SCN1A-213ENST00000636759 DNAH9Q9NYC9 4486 aa4.37□□□□□ -1.71
SCN1A-213ENST00000636759 UNC79Q9P2D8 2635 aa4.37□□□□□ -1.71
SCN1A-213ENST00000636759 RPL37AP61513 92 aaKnown RBP4.37□□□□□ -1.71
SCN1A-213ENST00000636759 FN1P02751 2386 aaKnown RBP4.37□□□□□ -1.71
SCN1A-213ENST00000636759 GCN1Q92616 2671 aaKnown RBP4.37□□□□□ -1.71
SCN1A-213ENST00000636759 TNP2Q05952 138 aa4.36□□□□□ -1.71
SCN1A-213ENST00000636759 CSAG1Q6PB30 78 aa4.36□□□□□ -1.71
SCN1A-213ENST00000636759 IGLV1-50A0A075B6I6 118 aa4.36□□□□□ -1.71
SCN1A-213ENST00000636759 KRTAP29-1A8MX34 341 aaPredicted RBP4.36□□□□□ -1.71
SCN1A-213ENST00000636759 TLN2Q9Y4G6 2542 aa4.36□□□□□ -1.71
SCN1A-213ENST00000636759 Q6ZRX8 168 aa4.35□□□□□ -1.71
SCN1A-213ENST00000636759 A0A087X002 238 aa4.35□□□□□ -1.71
SCN1A-213ENST00000636759 C1orf134Q5TEV5 83 aa4.34□□□□□ -1.71
SCN1A-213ENST00000636759 JMJD1CQ15652 2540 aa4.34□□□□□ -1.71
SCN1A-213ENST00000636759 HELZ2Q9BYK8 2649 aaKnown RBP4.34□□□□□ -1.71
SCN1A-213ENST00000636759 INAFM1C9JVW0 142 aa4.34□□□□□ -1.71
SCN1A-213ENST00000636759 PRKDCP78527 4128 aaKnown RBP4.33□□□□□ -1.72
SCN1A-213ENST00000636759 RTL8CO15255 209 aa4.33□□□□□ -1.72
SCN1A-213ENST00000636759 HRES1P13985 223 aa4.33□□□□□ -1.72
SCN1A-213ENST00000636759 TENM1Q9UKZ4 2725 aa4.33□□□□□ -1.72
SCN1A-213ENST00000636759 HIVEP1P15822 2718 aa4.32□□□□□ -1.72
SCN1A-213ENST00000636759 MYO9AB2RTY4 2548 aa4.32□□□□□ -1.72
SCN1A-213ENST00000636759 IGLV5-37A0A075B6J1 123 aa4.32□□□□□ -1.72
SCN1A-213ENST00000636759 RPL37AP8A6NKH3 93 aa4.32□□□□□ -1.72
SCN1A-213ENST00000636759 A8MWP4 228 aa4.32□□□□□ -1.72
SCN1A-213ENST00000636759 LCE2DQ5TA82 110 aaPredicted RBP4.32□□□□□ -1.72
SCN1A-213ENST00000636759 A0A0G2JQZ4 141 aa4.31□□□□□ -1.72
SCN1A-213ENST00000636759 A0A1W2PNN7 141 aa4.31□□□□□ -1.72
SCN1A-213ENST00000636759 X6R8D5 127 aa4.31□□□□□ -1.72
SCN1A-213ENST00000636759 IGFL1Q6UW32 110 aa4.31□□□□□ -1.72
SCN1A-213ENST00000636759 A0A1B0GU69 56 aa4.31□□□□□ -1.72
SCN1A-213ENST00000636759 LELP1Q5T871 98 aa4.31□□□□□ -1.72
SCN1A-213ENST00000636759 TP53AIP1Q9HCN2 124 aa4.31□□□□□ -1.72
SCN1A-213ENST00000636759 DNAH10Q8IVF4 4471 aa4.3□□□□□ -1.72
SCN1A-213ENST00000636759 HTN3P15516 51 aa4.3□□□□□ -1.72
SCN1A-213ENST00000636759 Q6ZR54 194 aa4.3□□□□□ -1.72
SCN1A-213ENST00000636759 NBEAL2Q6ZNJ1 2754 aa4.3□□□□□ -1.72
SCN1A-213ENST00000636759 MIR22HGQ0VDD5 57 aa4.29□□□□□ -1.72
SCN1A-213ENST00000636759 PRR34Q9NV39 138 aa4.29□□□□□ -1.72
SCN1A-213ENST00000636759 SONP18583 2426 aaKnown RBP4.29□□□□□ -1.72
SCN1A-213ENST00000636759 DEFB131BA0A096LNP1 70 aa4.29□□□□□ -1.72
SCN1A-213ENST00000636759 HUWE1Q7Z6Z7 4374 aaKnown RBP4.29□□□□□ -1.72
SCN1A-213ENST00000636759 IGHV6-1A0A0B4J1U7 121 aa4.28□□□□□ -1.72
SCN1A-213ENST00000636759 UQCR11O14957 56 aa4.28□□□□□ -1.72
SCN1A-213ENST00000636759 FASNP49327 2511 aaKnown RBP4.28□□□□□ -1.72
SCN1A-213ENST00000636759 ACANP16112 2415 aa4.28□□□□□ -1.72
SCN1A-213ENST00000636759 SPATA8Q6RVD6 105 aa4.28□□□□□ -1.72
SCN1A-213ENST00000636759 REG3GQ6UW15 175 aa4.28□□□□□ -1.72
SCN1A-213ENST00000636759 NSD1Q96L73 2696 aaPredicted RBP4.28□□□□□ -1.72
SCN1A-213ENST00000636759 PKD1L1Q8TDX9 2849 aa4.27□□□□□ -1.73
SCN1A-213ENST00000636759 F8P00451 2351 aa4.27□□□□□ -1.73
SCN1A-213ENST00000636759 IGKV2-24A0A0C4DH68 120 aa4.27□□□□□ -1.73
SCN1A-213ENST00000636759 KRTAP3-3Q9BYR6 98 aa4.26□□□□□ -1.73
SCN1A-213ENST00000636759 KRTAP3-2Q9BYR7 98 aa4.26□□□□□ -1.73
SCN1A-213ENST00000636759 ACYP2P14621 99 aa4.26□□□□□ -1.73
SCN1A-213ENST00000636759 CCDC168Q8NDH2 2452 aa4.26□□□□□ -1.73
SCN1A-213ENST00000636759 HECTD4Q9Y4D8 3996 aa4.25□□□□□ -1.73
SCN1A-213ENST00000636759 ROMO1P60602 79 aa4.25□□□□□ -1.73
SCN1A-213ENST00000636759 MMP24-AS1A0A0U1RRL7 71 aa4.25□□□□□ -1.73
SCN1A-213ENST00000636759 DEFB4AO15263 64 aa4.25□□□□□ -1.73
SCN1A-213ENST00000636759 KRTAP26-1Q6PEX3 210 aa4.25□□□□□ -1.73
SCN1A-213ENST00000636759 SPRR1AP35321 89 aa4.24□□□□□ -1.73
SCN1A-213ENST00000636759 FRAS1Q86XX4 4008 aa4.24□□□□□ -1.73
SCN1A-213ENST00000636759 KRTAP4-16G5E9R7 235 aaPredicted RBP4.23□□□□□ -1.73
SCN1A-213ENST00000636759 HIVEP2P31629 2446 aa4.23□□□□□ -1.73
SCN1A-213ENST00000636759 C15orf56Q8N910 161 aa4.23□□□□□ -1.73
SCN1A-213ENST00000636759 LINC00472Q9H8W2 130 aa4.22□□□□□ -1.73
SCN1A-213ENST00000636759 DEFB135Q30KP9 77 aa4.22□□□□□ -1.73
SCN1A-213ENST00000636759 HECTD1Q9ULT8 2610 aa4.22□□□□□ -1.73
SCN1A-213ENST00000636759 CDK2AP2O75956 126 aa4.21□□□□□ -1.73
SCN1A-213ENST00000636759 KRTAP10-11P60412 298 aa4.21□□□□□ -1.73
SCN1A-213ENST00000636759 MTORP42345 2549 aa4.21□□□□□ -1.74
SCN1A-213ENST00000636759 IGLV8-61A0A075B6I0 122 aa4.21□□□□□ -1.74
SCN1A-213ENST00000636759 KRTAP24-1Q3LI83 254 aa4.21□□□□□ -1.74
SCN1A-213ENST00000636759 FBN1P35555 2871 aaKnown RBP4.2□□□□□ -1.74
SCN1A-213ENST00000636759 PLA2G2DQ9UNK4 145 aa4.2□□□□□ -1.74
SCN1A-213ENST00000636759 A0A0A0MQY5 61 aa4.2□□□□□ -1.74
SCN1A-213ENST00000636759 FAM168BA1KXE4 195 aa4.2□□□□□ -1.74
SCN1A-213ENST00000636759 BAHCC1Q9P281 2608 aa4.19□□□□□ -1.74
SCN1A-213ENST00000636759 A0A096LNI7 61 aa4.19□□□□□ -1.74
SCN1A-213ENST00000636759 SETD2Q9BYW2 2564 aaPredicted RBP4.19□□□□□ -1.74
SCN1A-213ENST00000636759 TEP1Q99973 2627 aaKnown RBP4.19□□□□□ -1.74
SCN1A-213ENST00000636759 DNAH2Q9P225 4427 aa4.19□□□□□ -1.74
SCN1A-213ENST00000636759 PRLHP81277 87 aa4.19□□□□□ -1.74
SCN1A-213ENST00000636759 C8orf17Q9NRJ1 99 aa4.19□□□□□ -1.74
SCN1A-213ENST00000636759 VPS13DQ5THJ4 4388 aa4.18□□□□□ -1.74
SCN1A-213ENST00000636759 SPART-AS1P0CW21 52 aa4.18□□□□□ -1.74
SCN1A-213ENST00000636759 TENM3Q9P273 2699 aa4.18□□□□□ -1.74
SCN1A-213ENST00000636759 ZNF861PO60384 105 aa4.18□□□□□ -1.74
SCN1A-213ENST00000636759 DNAH6Q9C0G6 4158 aa4.18□□□□□ -1.74
SCN1A-213ENST00000636759 KRTAP25-1Q3LHN0 102 aa4.17□□□□□ -1.74
SCN1A-213ENST00000636759 H3BNG1 76 aa4.17□□□□□ -1.74
SCN1A-213ENST00000636759 MRPL34Q9BQ48 92 aaKnown RBP4.16□□□□□ -1.74
SCN1A-213ENST00000636759 TLX1NBP0CAT3 122 aa4.16□□□□□ -1.74
Retrieved 100 of 20,778 RNA–protein pairs in 97 ms