RNA–Protein interactions for RNA: ENST00000599833.1

SHKBP1-221, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 761 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-221ENST00000599833 SLC25A20O43772 301 aa11.04□□□□□ -0.64
SHKBP1-221ENST00000599833 PRO1933Q9H354 126 aa11.04□□□□□ -0.64
SHKBP1-221ENST00000599833 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP11.02□□□□□ -0.65
SHKBP1-221ENST00000599833 TRIAP1O43715 76 aa11.01□□□□□ -0.65
SHKBP1-221ENST00000599833 A0A0G2JQZ4 141 aa11□□□□□ -0.65
SHKBP1-221ENST00000599833 H0YGX0 51 aa10.99□□□□□ -0.65
SHKBP1-221ENST00000599833 MUC2Q02817 5179 aa10.99□□□□□ -0.65
SHKBP1-221ENST00000599833 IGLV8-61A0A075B6I0 122 aa10.96□□□□□ -0.65
SHKBP1-221ENST00000599833 IGLV7-46A0A075B6I9 117 aa10.96□□□□□ -0.65
SHKBP1-221ENST00000599833 TPRXLQ17RH7 258 aa10.96□□□□□ -0.65
SHKBP1-221ENST00000599833 FP248Q71RG6 208 aaPredicted RBP10.96□□□□□ -0.65
SHKBP1-221ENST00000599833 CD164Q04900 197 aa10.95□□□□□ -0.66
SHKBP1-221ENST00000599833 HRCT1Q6UXD1 115 aa10.94□□□□□ -0.66
SHKBP1-221ENST00000599833 PPDPFLQ8WWR9 84 aa10.94□□□□□ -0.66
SHKBP1-221ENST00000599833 A0A1B0GX51 115 aa10.92□□□□□ -0.66
SHKBP1-221ENST00000599833 CLEC2BQ92478 149 aa10.91□□□□□ -0.66
SHKBP1-221ENST00000599833 KRTAP13-3Q3SY46 172 aa10.9□□□□□ -0.66
SHKBP1-221ENST00000599833 Q5XG85 94 aa10.89□□□□□ -0.67
SHKBP1-221ENST00000599833 OCIAD2Q56VL3 154 aa10.88□□□□□ -0.67
SHKBP1-221ENST00000599833 IGFL1Q6UW32 110 aa10.88□□□□□ -0.67
SHKBP1-221ENST00000599833 F8WEM9 126 aa10.85□□□□□ -0.67
SHKBP1-221ENST00000599833 LIMD2Q9BT23 127 aa10.85□□□□□ -0.67
SHKBP1-221ENST00000599833 PSMB2P49721 201 aa10.84□□□□□ -0.67
SHKBP1-221ENST00000599833 H3BUT2 72 aa10.83□□□□□ -0.68
SHKBP1-221ENST00000599833 Q6JHZ5 121 aa10.83□□□□□ -0.68
SHKBP1-221ENST00000599833 SNHG12Q9BXW3 62 aa10.82□□□□□ -0.68
SHKBP1-221ENST00000599833 M0R143 59 aa10.81□□□□□ -0.68
SHKBP1-221ENST00000599833 NDUFV3P56181 108 aaKnown RBP10.81□□□□□ -0.68
SHKBP1-221ENST00000599833 TSTD3H0UI37 97 aa10.8□□□□□ -0.68
SHKBP1-221ENST00000599833 LST1O00453 97 aa10.79□□□□□ -0.68
SHKBP1-221ENST00000599833 SNCGO76070 127 aa10.79□□□□□ -0.68
SHKBP1-221ENST00000599833 C1orf195Q5TG92 126 aa10.79□□□□□ -0.68
SHKBP1-221ENST00000599833 COX6CP09669 75 aa10.78□□□□□ -0.68
SHKBP1-221ENST00000599833 CDIP1Q9H305 208 aa10.78□□□□□ -0.68
SHKBP1-221ENST00000599833 TRBV7-7A0A0K0K1E9 115 aa10.77□□□□□ -0.69
SHKBP1-221ENST00000599833 TRACP01848 142 aa10.75□□□□□ -0.69
SHKBP1-221ENST00000599833 ASB16-AS1Q495Z4 193 aa10.74□□□□□ -0.69
SHKBP1-221ENST00000599833 Q6Q795 121 aa10.74□□□□□ -0.69
SHKBP1-221ENST00000599833 NAA38Q9BRA0 125 aaKnown RBP10.74□□□□□ -0.69
SHKBP1-221ENST00000599833 ORMDL1Q9P0S3 153 aa10.74□□□□□ -0.69
SHKBP1-221ENST00000599833 FABP2P12104 132 aa10.73□□□□□ -0.69
SHKBP1-221ENST00000599833 DNAL4O96015 105 aa10.72□□□□□ -0.69
SHKBP1-221ENST00000599833 H3BMG7 143 aa10.71□□□□□ -0.69
SHKBP1-221ENST00000599833 GHRHP01286 108 aa10.71□□□□□ -0.69
SHKBP1-221ENST00000599833 FAT4Q6V0I7 4981 aa10.71□□□□□ -0.7
SHKBP1-221ENST00000599833 SCGB1C2P0DMR2 95 aa10.7□□□□□ -0.7
SHKBP1-221ENST00000599833 XP32Q5T750 250 aa10.7□□□□□ -0.7
SHKBP1-221ENST00000599833 A0A1W2PNM2 257 aa10.68□□□□□ -0.7
SHKBP1-221ENST00000599833 H3BQ85 93 aa10.68□□□□□ -0.7
SHKBP1-221ENST00000599833 TMEM256-PLSCR3K7ERE1 68 aa10.68□□□□□ -0.7
SHKBP1-221ENST00000599833 TCL1BO95988 128 aa10.68□□□□□ -0.7
SHKBP1-221ENST00000599833 UBE2V1Q13404 147 aa10.67□□□□□ -0.7
SHKBP1-221ENST00000599833 TEN1Q86WV5 123 aa10.66□□□□□ -0.7
SHKBP1-221ENST00000599833 BATFQ16520 125 aa10.64□□□□□ -0.71
SHKBP1-221ENST00000599833 TAX1BP3O14907 124 aa10.62□□□□□ -0.71
SHKBP1-221ENST00000599833 A0A1B0GV72 72 aa10.61□□□□□ -0.71
SHKBP1-221ENST00000599833 C9orf92A6NGG3 77 aa10.61□□□□□ -0.71
SHKBP1-221ENST00000599833 Q96NJ1 140 aa10.61□□□□□ -0.71
SHKBP1-221ENST00000599833 KRTAP4-1Q9BYQ7 146 aa10.6□□□□□ -0.71
SHKBP1-221ENST00000599833 A0A087WSZ3 146 aa10.59□□□□□ -0.71
SHKBP1-221ENST00000599833 TRBV7-4A0A0J9YYF1 115 aa10.59□□□□□ -0.71
SHKBP1-221ENST00000599833 BAALC-AS2P0C853 105 aa10.59□□□□□ -0.71
SHKBP1-221ENST00000599833 ATXN8Q156A1 80 aa10.59□□□□□ -0.71
SHKBP1-221ENST00000599833 ANKRD29Q8N6D5 301 aa10.58□□□□□ -0.72
SHKBP1-221ENST00000599833 C9orf118A6NHY6 69 aa10.57□□□□□ -0.72
SHKBP1-221ENST00000599833 SS18L2Q9UHA2 77 aa10.55□□□□□ -0.72
SHKBP1-221ENST00000599833 TRBV20-1A0A075B6N2 111 aa10.52□□□□□ -0.73
SHKBP1-221ENST00000599833 A0A1W2PPM0 123 aa10.52□□□□□ -0.73
SHKBP1-221ENST00000599833 SEC61BP60468 96 aaKnown RBP10.52□□□□□ -0.73
SHKBP1-221ENST00000599833 CCKP06307 115 aa10.51□□□□□ -0.73
SHKBP1-221ENST00000599833 RBM3P98179 157 aaKnown RBP10.51□□□□□ -0.73
SHKBP1-221ENST00000599833 LYRM7Q5U5X0 104 aa10.5□□□□□ -0.73
SHKBP1-221ENST00000599833 OBSCN-AS1Q96MR7 158 aa10.47□□□□□ -0.73
SHKBP1-221ENST00000599833 C9JAW5 83 aa10.46□□□□□ -0.73
SHKBP1-221ENST00000599833 RPL37P61927 97 aaKnown RBP10.46□□□□□ -0.73
SHKBP1-221ENST00000599833 LINC00472Q9H8W2 130 aa10.46□□□□□ -0.73
SHKBP1-221ENST00000599833 DSCR8Q96T75 97 aa10.45□□□□□ -0.74
SHKBP1-221ENST00000599833 PCOTHQ58A44 107 aa10.44□□□□□ -0.74
SHKBP1-221ENST00000599833 Q6ZQT0 140 aa10.44□□□□□ -0.74
SHKBP1-221ENST00000599833 LOC110117498A0A087WWA1 95 aa10.42□□□□□ -0.74
SHKBP1-221ENST00000599833 JMJD7-PLA2G4BH0Y9G9 81 aa10.41□□□□□ -0.74
SHKBP1-221ENST00000599833 COL5A1-AS1Q5SY13 56 aa10.39□□□□□ -0.75
SHKBP1-221ENST00000599833 MTURNQ8N3F0 131 aa10.39□□□□□ -0.75
SHKBP1-221ENST00000599833 H3BT86 120 aa10.38□□□□□ -0.75
SHKBP1-221ENST00000599833 VPS25Q9BRG1 176 aa10.38□□□□□ -0.75
SHKBP1-221ENST00000599833 DEFB116Q30KQ4 102 aa10.37□□□□□ -0.75
SHKBP1-221ENST00000599833 LCE2AQ5TA79 106 aaPredicted RBP10.37□□□□□ -0.75
SHKBP1-221ENST00000599833 C14orf132Q9NPU4 83 aa10.37□□□□□ -0.75
SHKBP1-221ENST00000599833 IGKV4-1P06312 121 aa10.36□□□□□ -0.75
SHKBP1-221ENST00000599833 Q75L30 129 aa10.35□□□□□ -0.75
SHKBP1-221ENST00000599833 SPCS1Q9Y6A9 102 aa10.35□□□□□ -0.75
SHKBP1-221ENST00000599833 SMCPP49901 116 aaPredicted RBP10.34□□□□□ -0.75
SHKBP1-221ENST00000599833 KRTAP19-2Q3LHN2 52 aa10.34□□□□□ -0.75
SHKBP1-221ENST00000599833 C20orf166-AS1Q96NR2 134 aa10.34□□□□□ -0.75
SHKBP1-221ENST00000599833 SIGMAR1Q99720 223 aa10.34□□□□□ -0.75
SHKBP1-221ENST00000599833 KRTAP16-1A8MUX0 517 aa10.33□□□□□ -0.76
SHKBP1-221ENST00000599833 A0A0U1RQV1 116 aa10.32□□□□□ -0.76
SHKBP1-221ENST00000599833 PCP4L1A6NKN8 68 aa10.32□□□□□ -0.76
SHKBP1-221ENST00000599833 DSCR10P59022 87 aa10.32□□□□□ -0.76
SHKBP1-221ENST00000599833 NOTCH2NLQ7Z3S9 236 aa10.32□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 101.5 ms