RNA–Protein interactions for RNA: ENST00000574799.5

CCDC40-212, Transcript of coiled-coil domain containing 40, humanhuman

TSL 1 (best)

Gene CCDC40, Length 3,795 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-212ENST00000574799 Q8NAQ8 132 aa6.25□□□□□ -1.41
CCDC40-212ENST00000574799 H0Y9J4 135 aa6.24□□□□□ -1.41
CCDC40-212ENST00000574799 RBM12B-AS1Q9P1G2 102 aa6.24□□□□□ -1.41
CCDC40-212ENST00000574799 PLECQ15149 4684 aaKnown RBP6.24□□□□□ -1.41
CCDC40-212ENST00000574799 DSCR10P59022 87 aa6.24□□□□□ -1.41
CCDC40-212ENST00000574799 DNHD1Q96M86 4753 aa6.24□□□□□ -1.41
CCDC40-212ENST00000574799 Q5VV11 94 aa6.24□□□□□ -1.41
CCDC40-212ENST00000574799 NOTCH1P46531 2555 aa6.24□□□□□ -1.41
CCDC40-212ENST00000574799 CYP4F30PQ9H0H9 118 aa6.23□□□□□ -1.41
CCDC40-212ENST00000574799 A0A096LNI7 61 aa6.23□□□□□ -1.41
CCDC40-212ENST00000574799 RPL37AP61513 92 aaKnown RBP6.23□□□□□ -1.41
CCDC40-212ENST00000574799 PCOTHQ58A44 107 aa6.23□□□□□ -1.41
CCDC40-212ENST00000574799 CASC2Q6XLA1 102 aa6.23□□□□□ -1.41
CCDC40-212ENST00000574799 STARD9Q9P2P6 4700 aa6.22□□□□□ -1.41
CCDC40-212ENST00000574799 IGLV5-48A0A075B6I7 105 aa6.22□□□□□ -1.41
CCDC40-212ENST00000574799 KRTAP24-1Q3LI83 254 aa6.22□□□□□ -1.41
CCDC40-212ENST00000574799 NDUFS5O43920 106 aa6.22□□□□□ -1.41
CCDC40-212ENST00000574799 SERTAD4-AS1Q5TG53 156 aa6.22□□□□□ -1.41
CCDC40-212ENST00000574799 Q6ZRX8 168 aa6.22□□□□□ -1.41
CCDC40-212ENST00000574799 PRR34Q9NV39 138 aa6.22□□□□□ -1.41
CCDC40-212ENST00000574799 A0A1B0GW54 56 aa6.22□□□□□ -1.41
CCDC40-212ENST00000574799 C16orf90A8MZG2 172 aa6.22□□□□□ -1.41
CCDC40-212ENST00000574799 SPAG11AQ6PDA7 123 aa6.21□□□□□ -1.42
CCDC40-212ENST00000574799 LINC00476Q8WZB0 136 aa6.2□□□□□ -1.42
CCDC40-212ENST00000574799 ATP11AUNQ6ZP68 121 aa6.2□□□□□ -1.42
CCDC40-212ENST00000574799 KCNQ1DNQ9H478 68 aa6.2□□□□□ -1.42
CCDC40-212ENST00000574799 Q8N9P0 234 aaPredicted RBP6.19□□□□□ -1.42
CCDC40-212ENST00000574799 ZCCHC13Q8WW36 166 aaKnown RBP6.19□□□□□ -1.42
CCDC40-212ENST00000574799 LINC00588Q9Y4M8 146 aa6.19□□□□□ -1.42
CCDC40-212ENST00000574799 OXLD1Q5BKU9 147 aa6.18□□□□□ -1.42
CCDC40-212ENST00000574799 FAM168BA1KXE4 195 aa6.18□□□□□ -1.42
CCDC40-212ENST00000574799 COA5Q86WW8 74 aa6.18□□□□□ -1.42
CCDC40-212ENST00000574799 IGKV2-24A0A0C4DH68 120 aa6.17□□□□□ -1.42
CCDC40-212ENST00000574799 C15orf56Q8N910 161 aa6.17□□□□□ -1.42
CCDC40-212ENST00000574799 KMT2AQ03164 3969 aa6.16□□□□□ -1.42
CCDC40-212ENST00000574799 Q9BRP9 147 aa6.16□□□□□ -1.42
CCDC40-212ENST00000574799 HECTD4Q9Y4D8 3996 aa6.16□□□□□ -1.42
CCDC40-212ENST00000574799 PRLHP81277 87 aa6.15□□□□□ -1.42
CCDC40-212ENST00000574799 DNAH2Q9P225 4427 aa6.15□□□□□ -1.42
CCDC40-212ENST00000574799 LOC101927531A0A1B0GV80 90 aa6.15□□□□□ -1.43
CCDC40-212ENST00000574799 LCE6AA0A183 80 aa6.14□□□□□ -1.43
CCDC40-212ENST00000574799 REG3GQ6UW15 175 aa6.14□□□□□ -1.43
CCDC40-212ENST00000574799 SPRR4Q96PI1 79 aa6.14□□□□□ -1.43
CCDC40-212ENST00000574799 IGFL1Q6UW32 110 aa6.13□□□□□ -1.43
CCDC40-212ENST00000574799 C7orf65Q6ZTY9 151 aa6.13□□□□□ -1.43
CCDC40-212ENST00000574799 CDK2AP2O75956 126 aa6.12□□□□□ -1.43
CCDC40-212ENST00000574799 LCA10Q71F78 164 aa6.12□□□□□ -1.43
CCDC40-212ENST00000574799 SPANXA2-OT1Q8N9U9 137 aa6.12□□□□□ -1.43
CCDC40-212ENST00000574799 H3BPC8 53 aa6.12□□□□□ -1.43
CCDC40-212ENST00000574799 IGLV1-50A0A075B6I6 118 aa6.11□□□□□ -1.43
CCDC40-212ENST00000574799 CDC42SE1Q9NRR8 79 aa6.11□□□□□ -1.43
CCDC40-212ENST00000574799 FBN3Q75N90 2809 aa6.11□□□□□ -1.43
CCDC40-212ENST00000574799 MEGF8Q7Z7M0 2845 aa6.1□□□□□ -1.43
CCDC40-212ENST00000574799 Q75L30 129 aa6.1□□□□□ -1.43
CCDC40-212ENST00000574799 VPS13DQ5THJ4 4388 aa6.1□□□□□ -1.43
CCDC40-212ENST00000574799 TENM2Q9NT68 2774 aa6.09□□□□□ -1.43
CCDC40-212ENST00000574799 FRAS1Q86XX4 4008 aa6.09□□□□□ -1.43
CCDC40-212ENST00000574799 KRTAP26-1Q6PEX3 210 aa6.09□□□□□ -1.44
CCDC40-212ENST00000574799 DEFB131BA0A096LNP1 70 aa6.08□□□□□ -1.44
CCDC40-212ENST00000574799 TNP2Q05952 138 aa6.08□□□□□ -1.44
CCDC40-212ENST00000574799 C11orf45Q8TAV5 145 aa6.06□□□□□ -1.44
CCDC40-212ENST00000574799 A8MWP4 228 aa6.06□□□□□ -1.44
CCDC40-212ENST00000574799 C4orf48Q5BLP8 95 aa6.05□□□□□ -1.44
CCDC40-212ENST00000574799 MOBPQ13875 183 aa6.05□□□□□ -1.44
CCDC40-212ENST00000574799 LINC01556Q5JQF7 62 aa6.04□□□□□ -1.44
CCDC40-212ENST00000574799 PRAC1Q96KF2 57 aa6.04□□□□□ -1.44
CCDC40-212ENST00000574799 A6NN06 94 aa6.04□□□□□ -1.44
CCDC40-212ENST00000574799 PHF5AQ7RTV0 110 aaKnown RBP6.04□□□□□ -1.44
CCDC40-212ENST00000574799 SPINK7P58062 85 aa6.03□□□□□ -1.44
CCDC40-212ENST00000574799 CNBPP62633 177 aaKnown RBP6.03□□□□□ -1.44
CCDC40-212ENST00000574799 IGHV6-1A0A0B4J1U7 121 aa6.03□□□□□ -1.44
CCDC40-212ENST00000574799 IGLV7-46A0A075B6I9 117 aa6.02□□□□□ -1.45
CCDC40-212ENST00000574799 IGLV9-49A0A0B4J1Y8 123 aa6.02□□□□□ -1.45
CCDC40-212ENST00000574799 SPRR1AP35321 89 aa6.01□□□□□ -1.45
CCDC40-212ENST00000574799 CASC10Q5T4H9 136 aa6.01□□□□□ -1.45
CCDC40-212ENST00000574799 H3BNG1 76 aa6.01□□□□□ -1.45
CCDC40-212ENST00000574799 K7EIL1 84 aa6.01□□□□□ -1.45
CCDC40-212ENST00000574799 STAB2Q8WWQ8 2551 aa6□□□□□ -1.45
CCDC40-212ENST00000574799 DNAH6Q9C0G6 4158 aa6□□□□□ -1.45
CCDC40-212ENST00000574799 DNAH8Q96JB1 4490 aa6□□□□□ -1.45
CCDC40-212ENST00000574799 KRTAP4-16G5E9R7 235 aaPredicted RBP6□□□□□ -1.45
CCDC40-212ENST00000574799 KRTAP29-1A8MX34 341 aaPredicted RBP6□□□□□ -1.45
CCDC40-212ENST00000574799 LINC01558Q9Y6Z2 57 aa6□□□□□ -1.45
CCDC40-212ENST00000574799 HYDINQ4G0P3 5121 aa5.99□□□□□ -1.45
CCDC40-212ENST00000574799 MDFIQ99750 246 aa5.99□□□□□ -1.45
CCDC40-212ENST00000574799 PLA2G2DQ9UNK4 145 aa5.99□□□□□ -1.45
CCDC40-212ENST00000574799 PRR26Q8N8Z3 221 aa5.99□□□□□ -1.45
CCDC40-212ENST00000574799 C8orf87E5RJ46 101 aa5.98□□□□□ -1.45
CCDC40-212ENST00000574799 TLX1NBP0CAT3 122 aa5.98□□□□□ -1.45
CCDC40-212ENST00000574799 C9orf163Q8N9P6 203 aa5.98□□□□□ -1.45
CCDC40-212ENST00000574799 TP53AIP1Q9HCN2 124 aa5.98□□□□□ -1.45
CCDC40-212ENST00000574799 LINC00313P59037 77 aa5.98□□□□□ -1.45
CCDC40-212ENST00000574799 SPINK6Q6UWN8 80 aa5.97□□□□□ -1.45
CCDC40-212ENST00000574799 PKD1P98161 4303 aa5.96□□□□□ -1.46
CCDC40-212ENST00000574799 IGLV5-37A0A075B6J1 123 aa5.95□□□□□ -1.46
CCDC40-212ENST00000574799 DNAH17Q9UFH2 4485 aa5.95□□□□□ -1.46
CCDC40-212ENST00000574799 H3BS24 57 aa5.95□□□□□ -1.46
CCDC40-212ENST00000574799 DNAH11Q96DT5 4516 aa5.94□□□□□ -1.46
CCDC40-212ENST00000574799 MMP24-AS1A0A0U1RRL7 71 aa5.94□□□□□ -1.46
CCDC40-212ENST00000574799 HRES1P13985 223 aa5.94□□□□□ -1.46
Retrieved 100 of 20,778 RNA–protein pairs in 51.7 ms