RNA–Protein interactions for RNA: ENST00000564593.1

LINC00560-201, long intergenic non-protein coding RNA 560, humanhuman

TSL 1 (best) BASIC

Gene LINC00560, Length 1,599 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00560-201ENST00000564593 KTN1-AS1Q86SY8 53 aa1.92□□□□□ -2.1
LINC00560-201ENST00000564593 TMEM126AQ9H061 195 aa1.92□□□□□ -2.1
LINC00560-201ENST00000564593 APCP25054 2843 aa1.91□□□□□ -2.1
LINC00560-201ENST00000564593 RELNP78509 3460 aa1.91□□□□□ -2.1
LINC00560-201ENST00000564593 CELSR2Q9HCU4 2923 aa1.91□□□□□ -2.1
LINC00560-201ENST00000564593 DNHD1Q96M86 4753 aa1.91□□□□□ -2.1
LINC00560-201ENST00000564593 LINC00959A0A1B0GUT2 108 aa1.91□□□□□ -2.1
LINC00560-201ENST00000564593 TMEM256-PLSCR3K7ERE1 68 aa1.91□□□□□ -2.1
LINC00560-201ENST00000564593 PRM2P04554 102 aa1.91□□□□□ -2.1
LINC00560-201ENST00000564593 BAALC-AS2P0C853 105 aa1.91□□□□□ -2.1
LINC00560-201ENST00000564593 SPART-AS1P0CW21 52 aa1.91□□□□□ -2.1
LINC00560-201ENST00000564593 LCA10Q71F78 164 aa1.91□□□□□ -2.1
LINC00560-201ENST00000564593 WFDC11Q8NEX6 87 aa1.91□□□□□ -2.1
LINC00560-201ENST00000564593 DEFB104AQ8WTQ1 72 aa1.91□□□□□ -2.1
LINC00560-201ENST00000564593 CLEC2BQ92478 149 aa1.91□□□□□ -2.1
LINC00560-201ENST00000564593 XAGE1AQ9HD64 81 aa1.91□□□□□ -2.1
LINC00560-201ENST00000564593 CRYBG3Q68DQ2 2970 aa1.91□□□□□ -2.1
LINC00560-201ENST00000564593 IGKV3OR2-268A0A0C4DH90 116 aa1.9□□□□□ -2.1
LINC00560-201ENST00000564593 H3BNG1 76 aa1.9□□□□□ -2.1
LINC00560-201ENST00000564593 PRB1P04280 392 aa1.9□□□□□ -2.1
LINC00560-201ENST00000564593 DEFB130BP0DP73 79 aa1.9□□□□□ -2.1
LINC00560-201ENST00000564593 DEFB130AP0DP74 79 aa1.9□□□□□ -2.1
LINC00560-201ENST00000564593 UBL5Q9BZL1 73 aa1.9□□□□□ -2.1
LINC00560-201ENST00000564593 SMG1Q96Q15 3661 aaKnown RBP1.9□□□□□ -2.11
LINC00560-201ENST00000564593 FBN1P35555 2871 aaKnown RBP1.9□□□□□ -2.11
LINC00560-201ENST00000564593 FAM236AA0A1B0GUQ0 79 aa1.89□□□□□ -2.11
LINC00560-201ENST00000564593 FAM236BA0A1B0GV22 79 aa1.89□□□□□ -2.11
LINC00560-201ENST00000564593 UQCRQO14949 82 aa1.89□□□□□ -2.11
LINC00560-201ENST00000564593 ANGP03950 147 aaKnown RBP1.89□□□□□ -2.11
LINC00560-201ENST00000564593 XCL1P47992 114 aa1.89□□□□□ -2.11
LINC00560-201ENST00000564593 CCL18P55774 89 aa1.89□□□□□ -2.11
LINC00560-201ENST00000564593 COX6A2Q02221 97 aa1.89□□□□□ -2.11
LINC00560-201ENST00000564593 LELP1Q5T871 98 aa1.89□□□□□ -2.11
LINC00560-201ENST00000564593 Q6JHZ5 121 aa1.89□□□□□ -2.11
LINC00560-201ENST00000564593 LAMTOR3Q9UHA4 124 aa1.89□□□□□ -2.11
LINC00560-201ENST00000564593 CELSR1Q9NYQ6 3014 aa1.89□□□□□ -2.11
LINC00560-201ENST00000564593 GVQW2A0A096LPI5 108 aaPredicted RBP1.89□□□□□ -2.11
LINC00560-201ENST00000564593 TRBV7-6A0A0J9YX20 115 aa1.89□□□□□ -2.11
LINC00560-201ENST00000564593 TRBV10-3A0A0K0K1G6 114 aa1.89□□□□□ -2.11
LINC00560-201ENST00000564593 hADV29S1A0JD25 119 aa1.89□□□□□ -2.11
LINC00560-201ENST00000564593 J3KT08 172 aa1.89□□□□□ -2.11
LINC00560-201ENST00000564593 BCE1O60756 84 aa1.89□□□□□ -2.11
LINC00560-201ENST00000564593 SPAG11BQ08648 103 aa1.89□□□□□ -2.11
LINC00560-201ENST00000564593 C9orf153Q5TBE3 101 aa1.89□□□□□ -2.11
LINC00560-201ENST00000564593 C5orf38Q86SI9 138 aa1.89□□□□□ -2.11
LINC00560-201ENST00000564593 SMIM11BQ8TCY0 68 aa1.89□□□□□ -2.11
LINC00560-201ENST00000564593 SMCR5Q8TEV8 140 aa1.89□□□□□ -2.11
LINC00560-201ENST00000564593 Q9BRP9 147 aa1.89□□□□□ -2.11
LINC00560-201ENST00000564593 ACANP16112 2415 aa1.89□□□□□ -2.11
LINC00560-201ENST00000564593 NSD1Q96L73 2696 aaPredicted RBP1.88□□□□□ -2.11
LINC00560-201ENST00000564593 M0R378 163 aa1.88□□□□□ -2.11
LINC00560-201ENST00000564593 KRTAP12-1P59990 96 aa1.88□□□□□ -2.11
LINC00560-201ENST00000564593 DEFB135Q30KP9 77 aa1.88□□□□□ -2.11
LINC00560-201ENST00000564593 LINC01554Q52M75 96 aa1.88□□□□□ -2.11
LINC00560-201ENST00000564593 SOSTDC1Q6X4U4 206 aa1.88□□□□□ -2.11
LINC00560-201ENST00000564593 PRR15Q8IV56 129 aa1.88□□□□□ -2.11
LINC00560-201ENST00000564593 LINC00269Q8N2A0 174 aa1.88□□□□□ -2.11
LINC00560-201ENST00000564593 Q8N814 137 aa1.88□□□□□ -2.11
LINC00560-201ENST00000564593 DIRC1Q969H9 104 aa1.88□□□□□ -2.11
LINC00560-201ENST00000564593 OBSCN-AS1Q96MR7 158 aa1.88□□□□□ -2.11
LINC00560-201ENST00000564593 DSCR8Q96T75 97 aa1.88□□□□□ -2.11
LINC00560-201ENST00000564593 FN1P02751 2386 aaKnown RBP1.88□□□□□ -2.11
LINC00560-201ENST00000564593 NF1P21359 2839 aa1.87□□□□□ -2.11
LINC00560-201ENST00000564593 LOC110117498A0A087WWA1 95 aa1.87□□□□□ -2.11
LINC00560-201ENST00000564593 CCKP06307 115 aa1.87□□□□□ -2.11
LINC00560-201ENST00000564593 TMEM258P61165 79 aa1.87□□□□□ -2.11
LINC00560-201ENST00000564593 HIST1H4AP62805 103 aaKnown RBP1.87□□□□□ -2.11
LINC00560-201ENST00000564593 RBM3P98179 157 aaKnown RBP1.87□□□□□ -2.11
LINC00560-201ENST00000564593 HRCT1Q6UXD1 115 aa1.87□□□□□ -2.11
LINC00560-201ENST00000564593 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP1.87□□□□□ -2.11
LINC00560-201ENST00000564593 WFDC10AQ9H1F0 79 aa1.87□□□□□ -2.11
LINC00560-201ENST00000564593 C14orf132Q9NPU4 83 aa1.87□□□□□ -2.11
LINC00560-201ENST00000564593 ITPR2Q14571 2701 aa1.87□□□□□ -2.11
LINC00560-201ENST00000564593 TRAV23DV6A0A075B6W5 121 aa1.86□□□□□ -2.11
LINC00560-201ENST00000564593 COX7CP15954 63 aa1.86□□□□□ -2.11
LINC00560-201ENST00000564593 ATP5EP56381 51 aaPredicted RBP1.86□□□□□ -2.11
LINC00560-201ENST00000564593 CLPSL2Q6UWE3 100 aa1.86□□□□□ -2.11
LINC00560-201ENST00000564593 SERP2Q8N6R1 65 aa1.86□□□□□ -2.11
LINC00560-201ENST00000564593 LINC00526Q96FQ7 95 aa1.86□□□□□ -2.11
LINC00560-201ENST00000564593 A0A0G2JQZ4 141 aa1.85□□□□□ -2.11
LINC00560-201ENST00000564593 NDUFC1O43677 76 aa1.85□□□□□ -2.11
LINC00560-201ENST00000564593 CRYGAP11844 174 aa1.85□□□□□ -2.11
LINC00560-201ENST00000564593 HTN3P15516 51 aa1.85□□□□□ -2.11
LINC00560-201ENST00000564593 COX7BP24311 80 aa1.85□□□□□ -2.11
LINC00560-201ENST00000564593 PCOTHQ58A44 107 aa1.85□□□□□ -2.11
LINC00560-201ENST00000564593 LINC00575Q6W349 94 aa1.85□□□□□ -2.11
LINC00560-201ENST00000564593 WFDC9Q8NEX5 89 aa1.85□□□□□ -2.11
LINC00560-201ENST00000564593 ATRQ13535 2644 aa1.85□□□□□ -2.11
LINC00560-201ENST00000564593 A0A096LPF7 62 aa1.85□□□□□ -2.11
LINC00560-201ENST00000564593 NCR3O14931 201 aa1.85□□□□□ -2.11
LINC00560-201ENST00000564593 LINC01556Q5JQF7 62 aa1.85□□□□□ -2.11
LINC00560-201ENST00000564593 Q5XG85 94 aa1.85□□□□□ -2.11
LINC00560-201ENST00000564593 CCDC179H3BU77 68 aa1.84□□□□□ -2.12
LINC00560-201ENST00000564593 ELOF1P60002 83 aaKnown RBP1.84□□□□□ -2.12
LINC00560-201ENST00000564593 LINC00846Q9NV44 126 aa1.84□□□□□ -2.12
LINC00560-201ENST00000564593 PDZD2O15018 2839 aa1.83□□□□□ -2.12
LINC00560-201ENST00000564593 NIPBLQ6KC79 2804 aaeCLIP1.83□□□□□ -2.12
LINC00560-201ENST00000564593 ZFHX3Q15911 3703 aa1.83□□□□□ -2.12
LINC00560-201ENST00000564593 TRAV7A0A075B6U4 112 aa1.83□□□□□ -2.12
LINC00560-201ENST00000564593 TRAV10A0A0B4J240 114 aa1.83□□□□□ -2.12
Retrieved 100 of 20,778 RNA–protein pairs in 344.2 ms