RNA–Protein interactions for RNA: ENST00000563874.5

CLN3-210, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 3,081 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-210ENST00000563874 REG3GQ6UW15 175 aa8.39□□□□□ -1.07
CLN3-210ENST00000563874 C8orf87E5RJ46 101 aa8.39□□□□□ -1.07
CLN3-210ENST00000563874 CSMD3Q7Z407 3707 aa8.39□□□□□ -1.07
CLN3-210ENST00000563874 CMYA5Q8N3K9 4069 aa8.38□□□□□ -1.07
CLN3-210ENST00000563874 A0A1B0GW54 56 aa8.38□□□□□ -1.07
CLN3-210ENST00000563874 KTN1-AS1Q86SY8 53 aa8.37□□□□□ -1.07
CLN3-210ENST00000563874 PRR4Q16378 134 aa8.37□□□□□ -1.07
CLN3-210ENST00000563874 LYSTQ99698 3801 aa8.36□□□□□ -1.07
CLN3-210ENST00000563874 PSCAO43653 123 aa8.36□□□□□ -1.07
CLN3-210ENST00000563874 KRTAP24-1Q3LI83 254 aa8.36□□□□□ -1.07
CLN3-210ENST00000563874 IGFL1Q6UW32 110 aa8.36□□□□□ -1.07
CLN3-210ENST00000563874 DNAH1Q9P2D7 4330 aa8.35□□□□□ -1.07
CLN3-210ENST00000563874 WFDC13Q8IUB5 93 aa8.35□□□□□ -1.07
CLN3-210ENST00000563874 DNAH10Q8IVF4 4471 aa8.35□□□□□ -1.07
CLN3-210ENST00000563874 IGLV2-33A0A075B6J2 118 aaPredicted RBP8.34□□□□□ -1.07
CLN3-210ENST00000563874 A0A087WSZ3 146 aa8.34□□□□□ -1.07
CLN3-210ENST00000563874 HCG22E2RYF7 251 aa8.34□□□□□ -1.07
CLN3-210ENST00000563874 A0A096LNI7 61 aa8.34□□□□□ -1.07
CLN3-210ENST00000563874 LCE6AA0A183 80 aa8.34□□□□□ -1.07
CLN3-210ENST00000563874 STAB2Q8WWQ8 2551 aa8.33□□□□□ -1.08
CLN3-210ENST00000563874 RPL37AP61513 92 aaKnown RBP8.33□□□□□ -1.08
CLN3-210ENST00000563874 C1orf64Q8NEQ6 169 aa8.31□□□□□ -1.08
CLN3-210ENST00000563874 MGAM2Q2M2H8 2515 aa8.31□□□□□ -1.08
CLN3-210ENST00000563874 ZCCHC13Q8WW36 166 aaKnown RBP8.31□□□□□ -1.08
CLN3-210ENST00000563874 hDV103S1A0JD37 113 aa8.3□□□□□ -1.08
CLN3-210ENST00000563874 KRTAP1-5Q9BYS1 174 aa8.3□□□□□ -1.08
CLN3-210ENST00000563874 TENM2Q9NT68 2774 aa8.3□□□□□ -1.08
CLN3-210ENST00000563874 DNAH3Q8TD57 4116 aa8.28□□□□□ -1.08
CLN3-210ENST00000563874 CHTF8P0CG12 524 aa8.28□□□□□ -1.08
CLN3-210ENST00000563874 KRTAP11-1Q8IUC1 163 aa8.27□□□□□ -1.09
CLN3-210ENST00000563874 UBE2AP49459 152 aa8.27□□□□□ -1.09
CLN3-210ENST00000563874 PSPHP1O15172 72 aa8.26□□□□□ -1.09
CLN3-210ENST00000563874 HUWE1Q7Z6Z7 4374 aaKnown RBP8.26□□□□□ -1.09
CLN3-210ENST00000563874 FBN3Q75N90 2809 aa8.26□□□□□ -1.09
CLN3-210ENST00000563874 C16orf90A8MZG2 172 aa8.26□□□□□ -1.09
CLN3-210ENST00000563874 A8MU10 97 aa8.25□□□□□ -1.09
CLN3-210ENST00000563874 PHF5AQ7RTV0 110 aaKnown RBP8.25□□□□□ -1.09
CLN3-210ENST00000563874 MDFIQ99750 246 aa8.24□□□□□ -1.09
CLN3-210ENST00000563874 LINC00208Q96KT6 92 aa8.23□□□□□ -1.09
CLN3-210ENST00000563874 COL7A1Q02388 2944 aa8.23□□□□□ -1.09
CLN3-210ENST00000563874 SPTSSBQ8NFR3 76 aa8.22□□□□□ -1.09
CLN3-210ENST00000563874 DNHD1Q96M86 4753 aa8.22□□□□□ -1.09
CLN3-210ENST00000563874 MP68P56378 58 aa8.21□□□□□ -1.09
CLN3-210ENST00000563874 DNAH9Q9NYC9 4486 aa8.21□□□□□ -1.09
CLN3-210ENST00000563874 IGLV8-61A0A075B6I0 122 aa8.21□□□□□ -1.1
CLN3-210ENST00000563874 K7EIL1 84 aa8.21□□□□□ -1.1
CLN3-210ENST00000563874 CASC2Q6XLA1 102 aa8.19□□□□□ -1.1
CLN3-210ENST00000563874 CNBPP62633 177 aaKnown RBP8.19□□□□□ -1.1
CLN3-210ENST00000563874 KRTAP29-1A8MX34 341 aaPredicted RBP8.18□□□□□ -1.1
CLN3-210ENST00000563874 TRAV22A0A0B4J277 110 aa8.18□□□□□ -1.1
CLN3-210ENST00000563874 NDUFS5O43920 106 aa8.18□□□□□ -1.1
CLN3-210ENST00000563874 A8MUN3 132 aa8.18□□□□□ -1.1
CLN3-210ENST00000563874 UBE2DNLQ8IWF7 75 aa8.17□□□□□ -1.1
CLN3-210ENST00000563874 H0Y9P7 68 aa8.17□□□□□ -1.1
CLN3-210ENST00000563874 CYP4F30PQ9H0H9 118 aa8.17□□□□□ -1.1
CLN3-210ENST00000563874 Q1T7F1 81 aa8.16□□□□□ -1.1
CLN3-210ENST00000563874 NDUFB1O75438 58 aa8.16□□□□□ -1.1
CLN3-210ENST00000563874 H0Y9J4 135 aa8.15□□□□□ -1.11
CLN3-210ENST00000563874 LINC00472Q9H8W2 130 aa8.14□□□□□ -1.11
CLN3-210ENST00000563874 DNAH7Q8WXX0 4024 aa8.14□□□□□ -1.11
CLN3-210ENST00000563874 A8MWP4 228 aa8.14□□□□□ -1.11
CLN3-210ENST00000563874 B9D2Q9BPU9 175 aa8.14□□□□□ -1.11
CLN3-210ENST00000563874 PANO1I0J062 215 aa8.13□□□□□ -1.11
CLN3-210ENST00000563874 SPRR1BP22528 89 aa8.11□□□□□ -1.11
CLN3-210ENST00000563874 LCA10Q71F78 164 aa8.1□□□□□ -1.11
CLN3-210ENST00000563874 IGLV9-49A0A0B4J1Y8 123 aa8.09□□□□□ -1.11
CLN3-210ENST00000563874 C9orf163Q8N9P6 203 aa8.08□□□□□ -1.12
CLN3-210ENST00000563874 C14orf177Q52M58 125 aa8.07□□□□□ -1.12
CLN3-210ENST00000563874 APLNQ9ULZ1 77 aa8.07□□□□□ -1.12
CLN3-210ENST00000563874 MMP24-AS1A0A0U1RRL7 71 aa8.06□□□□□ -1.12
CLN3-210ENST00000563874 C7orf65Q6ZTY9 151 aa8.06□□□□□ -1.12
CLN3-210ENST00000563874 PCOTHQ58A44 107 aa8.04□□□□□ -1.12
CLN3-210ENST00000563874 SPANXA2-OT1Q8N9U9 137 aa8.04□□□□□ -1.12
CLN3-210ENST00000563874 H3BPC8 53 aa8.03□□□□□ -1.12
CLN3-210ENST00000563874 A6NN06 94 aa8.02□□□□□ -1.13
CLN3-210ENST00000563874 CHKB-CPT1BH3BT56 60 aa8.02□□□□□ -1.13
CLN3-210ENST00000563874 KRTAP13-1Q8IUC0 172 aa8.02□□□□□ -1.13
CLN3-210ENST00000563874 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP8.02□□□□□ -1.13
CLN3-210ENST00000563874 Q5VV11 94 aa8.01□□□□□ -1.13
CLN3-210ENST00000563874 PLECQ15149 4684 aaKnown RBP8.01□□□□□ -1.13
CLN3-210ENST00000563874 ATP11AUNQ6ZP68 121 aa8.01□□□□□ -1.13
CLN3-210ENST00000563874 Q8N9P0 234 aaPredicted RBP8.01□□□□□ -1.13
CLN3-210ENST00000563874 Q96NJ1 140 aa8.01□□□□□ -1.13
CLN3-210ENST00000563874 ANAPC11Q9NYG5 84 aa8□□□□□ -1.13
CLN3-210ENST00000563874 NBDYA0A0U1RRE5 68 aa7.99□□□□□ -1.13
CLN3-210ENST00000563874 PRR15LQ9BU68 103 aa7.99□□□□□ -1.13
CLN3-210ENST00000563874 IGHV6-1A0A0B4J1U7 121 aa7.98□□□□□ -1.13
CLN3-210ENST00000563874 LINC00313P59037 77 aa7.98□□□□□ -1.13
CLN3-210ENST00000563874 MOBPQ13875 183 aa7.98□□□□□ -1.13
CLN3-210ENST00000563874 COA5Q86WW8 74 aa7.98□□□□□ -1.13
CLN3-210ENST00000563874 Q6ZRN7 208 aaPredicted RBP7.96□□□□□ -1.14
CLN3-210ENST00000563874 LINC01554Q52M75 96 aa7.95□□□□□ -1.14
CLN3-210ENST00000563874 C8orf17Q9NRJ1 99 aa7.95□□□□□ -1.14
CLN3-210ENST00000563874 FRAS1Q86XX4 4008 aa7.95□□□□□ -1.14
CLN3-210ENST00000563874 IGLV7-46A0A075B6I9 117 aa7.94□□□□□ -1.14
CLN3-210ENST00000563874 SPACA4Q8TDM5 124 aa7.94□□□□□ -1.14
CLN3-210ENST00000563874 A0A0A0MQY5 61 aa7.94□□□□□ -1.14
CLN3-210ENST00000563874 LIMD2Q9BT23 127 aa7.94□□□□□ -1.14
CLN3-210ENST00000563874 A0A087X002 238 aa7.93□□□□□ -1.14
CLN3-210ENST00000563874 NOTCH2NLQ7Z3S9 236 aa7.93□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 49.5 ms