RNA–Protein interactions for RNA: ENST00000560502.5

LDLR-213, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 509 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-213ENST00000560502 PHF5AQ7RTV0 110 aaKnown RBP8.54□□□□□ -1.04
LDLR-213ENST00000560502 PPDPFLQ8WWR9 84 aa8.54□□□□□ -1.04
LDLR-213ENST00000560502 K7ERU9 68 aa8.52□□□□□ -1.05
LDLR-213ENST00000560502 Q6ZQY7 126 aa8.51□□□□□ -1.05
LDLR-213ENST00000560502 JMJD7-PLA2G4BH0Y9G9 81 aa8.49□□□□□ -1.05
LDLR-213ENST00000560502 BCE1O60756 84 aa8.49□□□□□ -1.05
LDLR-213ENST00000560502 FAM19A1Q7Z5A9 133 aa8.49□□□□□ -1.05
LDLR-213ENST00000560502 LPAP08519 4548 aa8.48□□□□□ -1.05
LDLR-213ENST00000560502 OBSCN-AS1Q96MR7 158 aa8.48□□□□□ -1.05
LDLR-213ENST00000560502 Q9BRP9 147 aa8.48□□□□□ -1.05
LDLR-213ENST00000560502 PSORS1C2Q9UIG4 136 aa8.48□□□□□ -1.05
LDLR-213ENST00000560502 C21orf62-AS1Q17RA5 79 aa8.47□□□□□ -1.05
LDLR-213ENST00000560502 IGLV5-48A0A075B6I7 105 aa8.45□□□□□ -1.06
LDLR-213ENST00000560502 TEX49A0A1B0GTD5 131 aa8.45□□□□□ -1.06
LDLR-213ENST00000560502 UBE2AP49459 152 aa8.45□□□□□ -1.06
LDLR-213ENST00000560502 KRTAP11-1Q8IUC1 163 aa8.44□□□□□ -1.06
LDLR-213ENST00000560502 SMCR5Q8TEV8 140 aa8.44□□□□□ -1.06
LDLR-213ENST00000560502 KRTAP13-1Q8IUC0 172 aa8.43□□□□□ -1.06
LDLR-213ENST00000560502 PRLHP81277 87 aa8.42□□□□□ -1.06
LDLR-213ENST00000560502 C1orf137Q5JT78 98 aa8.42□□□□□ -1.06
LDLR-213ENST00000560502 FAM240AA0A1B0GVK7 77 aa8.41□□□□□ -1.06
LDLR-213ENST00000560502 PDE6GP18545 87 aa8.41□□□□□ -1.06
LDLR-213ENST00000560502 LAMTOR3Q9UHA4 124 aa8.41□□□□□ -1.06
LDLR-213ENST00000560502 IGLV7-43P04211 117 aa8.4□□□□□ -1.06
LDLR-213ENST00000560502 PRR26Q8N8Z3 221 aa8.4□□□□□ -1.06
LDLR-213ENST00000560502 HIGD2AQ9BW72 106 aa8.4□□□□□ -1.06
LDLR-213ENST00000560502 ACYP1P07311 99 aa8.39□□□□□ -1.07
LDLR-213ENST00000560502 NDUFV3P56181 108 aaKnown RBP8.39□□□□□ -1.07
LDLR-213ENST00000560502 LINC01547P58512 204 aaPredicted RBP8.39□□□□□ -1.07
LDLR-213ENST00000560502 RBM3P98179 157 aaKnown RBP8.39□□□□□ -1.07
LDLR-213ENST00000560502 LOC110117498A0A087WWA1 95 aa8.38□□□□□ -1.07
LDLR-213ENST00000560502 ERC2-IT1O76042 136 aa8.38□□□□□ -1.07
LDLR-213ENST00000560502 Q8N377 158 aa8.38□□□□□ -1.07
LDLR-213ENST00000560502 ZNF706Q9Y5V0 76 aaPredicted RBP8.38□□□□□ -1.07
LDLR-213ENST00000560502 SPRR1BP22528 89 aa8.37□□□□□ -1.07
LDLR-213ENST00000560502 ZNF861PO60384 105 aa8.36□□□□□ -1.07
LDLR-213ENST00000560502 KRTAP1-4P0C5Y4 121 aa8.36□□□□□ -1.07
LDLR-213ENST00000560502 DSCR8Q96T75 97 aa8.36□□□□□ -1.07
LDLR-213ENST00000560502 C14orf132Q9NPU4 83 aa8.36□□□□□ -1.07
LDLR-213ENST00000560502 ST20-AS1Q8NBB2 130 aa8.35□□□□□ -1.07
LDLR-213ENST00000560502 DEFB105AQ8NG35 78 aa8.35□□□□□ -1.07
LDLR-213ENST00000560502 TRBV7-4A0A0J9YYF1 115 aa8.33□□□□□ -1.08
LDLR-213ENST00000560502 F8WEM9 126 aa8.33□□□□□ -1.08
LDLR-213ENST00000560502 CCKP06307 115 aa8.33□□□□□ -1.08
LDLR-213ENST00000560502 Q6ZQT0 140 aa8.32□□□□□ -1.08
LDLR-213ENST00000560502 MUC2Q02817 5179 aa8.3□□□□□ -1.08
LDLR-213ENST00000560502 IGLV8-61A0A075B6I0 122 aa8.3□□□□□ -1.08
LDLR-213ENST00000560502 A0A1B0GW54 56 aa8.3□□□□□ -1.08
LDLR-213ENST00000560502 LINC00483Q53H64 154 aa8.3□□□□□ -1.08
LDLR-213ENST00000560502 GAGE2AQ6NT46 116 aa8.3□□□□□ -1.08
LDLR-213ENST00000560502 SMIM29Q86T20 159 aa8.29□□□□□ -1.08
LDLR-213ENST00000560502 SPRR4Q96PI1 79 aa8.29□□□□□ -1.08
LDLR-213ENST00000560502 VPS25Q9BRG1 176 aa8.28□□□□□ -1.08
LDLR-213ENST00000560502 A0A1B0GV72 72 aa8.27□□□□□ -1.09
LDLR-213ENST00000560502 Q6JHZ5 121 aa8.27□□□□□ -1.09
LDLR-213ENST00000560502 PRR4Q16378 134 aa8.25□□□□□ -1.09
LDLR-213ENST00000560502 C3orf22Q8N5N4 141 aa8.25□□□□□ -1.09
LDLR-213ENST00000560502 CDIP1Q9H305 208 aa8.24□□□□□ -1.09
LDLR-213ENST00000560502 Q8NBF4 154 aa8.21□□□□□ -1.1
LDLR-213ENST00000560502 LINC00643Q86TS7 51 aa8.2□□□□□ -1.1
LDLR-213ENST00000560502 UBL5Q9BZL1 73 aa8.2□□□□□ -1.1
LDLR-213ENST00000560502 FAM229BQ4G0N7 80 aa8.19□□□□□ -1.1
LDLR-213ENST00000560502 LINC00846Q9NV44 126 aa8.19□□□□□ -1.1
LDLR-213ENST00000560502 A0A0U1RQV1 116 aa8.18□□□□□ -1.1
LDLR-213ENST00000560502 ATP5EP2Q5VTU8 51 aa8.18□□□□□ -1.1
LDLR-213ENST00000560502 Q6Q795 121 aa8.18□□□□□ -1.1
LDLR-213ENST00000560502 IGFL1Q6UW32 110 aa8.18□□□□□ -1.1
LDLR-213ENST00000560502 KRTAP9-2Q9BYQ4 174 aa8.18□□□□□ -1.1
LDLR-213ENST00000560502 A0A087X002 238 aa8.17□□□□□ -1.1
LDLR-213ENST00000560502 CRYGAP11844 174 aa8.17□□□□□ -1.1
LDLR-213ENST00000560502 A0A1W2PNM2 257 aa8.16□□□□□ -1.1
LDLR-213ENST00000560502 SIGMAR1Q99720 223 aa8.16□□□□□ -1.1
LDLR-213ENST00000560502 FAT4Q6V0I7 4981 aa8.15□□□□□ -1.1
LDLR-213ENST00000560502 LCE2AQ5TA79 106 aaPredicted RBP8.15□□□□□ -1.1
LDLR-213ENST00000560502 C9orf153Q5TBE3 101 aa8.15□□□□□ -1.1
LDLR-213ENST00000560502 IGLV9-49A0A0B4J1Y8 123 aa8.13□□□□□ -1.11
LDLR-213ENST00000560502 TRBV7-7A0A0K0K1E9 115 aa8.13□□□□□ -1.11
LDLR-213ENST00000560502 Q6ZVQ6 151 aa8.12□□□□□ -1.11
LDLR-213ENST00000560502 SSBP3-AS1Q7Z2R9 100 aa8.12□□□□□ -1.11
LDLR-213ENST00000560502 IMUPQ9GZP8 106 aa8.12□□□□□ -1.11
LDLR-213ENST00000560502 MOBPQ13875 183 aa8.11□□□□□ -1.11
LDLR-213ENST00000560502 MUC17Q685J3 4493 aa8.1□□□□□ -1.11
LDLR-213ENST00000560502 TYMSOSQ8TAI1 123 aa8.1□□□□□ -1.11
LDLR-213ENST00000560502 MT-ATP8P03928 68 aa8.09□□□□□ -1.11
LDLR-213ENST00000560502 CXCL6P80162 114 aa8.09□□□□□ -1.11
LDLR-213ENST00000560502 CD164Q04900 197 aa8.09□□□□□ -1.11
LDLR-213ENST00000560502 NREPQ16612 68 aa8.09□□□□□ -1.11
LDLR-213ENST00000560502 KRTAP13-2Q52LG2 175 aa8.09□□□□□ -1.11
LDLR-213ENST00000560502 ANAPC11Q9NYG5 84 aa8.07□□□□□ -1.12
LDLR-213ENST00000560502 SCGB1A1P11684 91 aa8.06□□□□□ -1.12
LDLR-213ENST00000560502 SS18L2Q9UHA2 77 aa8.06□□□□□ -1.12
LDLR-213ENST00000560502 RETNLBQ9BQ08 111 aa8.05□□□□□ -1.12
LDLR-213ENST00000560502 A0A087WSZ3 146 aa8.04□□□□□ -1.12
LDLR-213ENST00000560502 TPRXLQ17RH7 258 aa8.03□□□□□ -1.12
LDLR-213ENST00000560502 LINC00304Q8N9R0 145 aa8.03□□□□□ -1.12
LDLR-213ENST00000560502 A0A0G2JQZ4 141 aa8.02□□□□□ -1.13
LDLR-213ENST00000560502 BPY2O14599 106 aa8.02□□□□□ -1.13
LDLR-213ENST00000560502 IGKV3D-7A0A0C4DH55 119 aa8□□□□□ -1.13
LDLR-213ENST00000560502 KRTAP9-6A0A140TA67 174 aa7.99□□□□□ -1.13
LDLR-213ENST00000560502 J3KT08 172 aa7.99□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 55 ms