RNA–Protein interactions for RNA: ENST00000560202.1

USP3-218, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5

Gene USP3, Length 1,681 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-218ENST00000560202 FAM30AQ9NZY2 134 aa7.04□□□□□ -1.28
USP3-218ENST00000560202 PRO0628Q9UI54 55 aa7.04□□□□□ -1.28
USP3-218ENST00000560202 TRAV7A0A075B6U4 112 aa7.03□□□□□ -1.28
USP3-218ENST00000560202 PRYO14603 147 aa7.03□□□□□ -1.28
USP3-218ENST00000560202 NDUFC1O43677 76 aa7.03□□□□□ -1.28
USP3-218ENST00000560202 Q6ZSA8 131 aa7.03□□□□□ -1.28
USP3-218ENST00000560202 UBE2BP63146 152 aa7.03□□□□□ -1.28
USP3-218ENST00000560202 TRBV7-6A0A0J9YX20 115 aa7.02□□□□□ -1.29
USP3-218ENST00000560202 OXTP01178 125 aa7.02□□□□□ -1.29
USP3-218ENST00000560202 SPRR1AP35321 89 aa7.02□□□□□ -1.29
USP3-218ENST00000560202 PDE6GP18545 87 aa7.01□□□□□ -1.29
USP3-218ENST00000560202 COX7BP24311 80 aa7.01□□□□□ -1.29
USP3-218ENST00000560202 KLKP1Q107X0 134 aa7.01□□□□□ -1.29
USP3-218ENST00000560202 C4orf26Q17RF5 130 aa7.01□□□□□ -1.29
USP3-218ENST00000560202 REG3GQ6UW15 175 aa7.01□□□□□ -1.29
USP3-218ENST00000560202 KRTAP11-1Q8IUC1 163 aa7.01□□□□□ -1.29
USP3-218ENST00000560202 DYNC1H1Q14204 4646 aaKnown RBP7.01□□□□□ -1.29
USP3-218ENST00000560202 A0A087WVE0 104 aa7□□□□□ -1.29
USP3-218ENST00000560202 ELOF1P60002 83 aaKnown RBP7□□□□□ -1.29
USP3-218ENST00000560202 HRCT1Q6UXD1 115 aa7□□□□□ -1.29
USP3-218ENST00000560202 CIRBP-AS1Q8TBR5 109 aa7□□□□□ -1.29
USP3-218ENST00000560202 LRP1BQ9NZR2 4599 aa7□□□□□ -1.29
USP3-218ENST00000560202 SMIM26A0A096LP01 95 aa7□□□□□ -1.29
USP3-218ENST00000560202 KRTAP4-16G5E9R7 235 aaPredicted RBP7□□□□□ -1.29
USP3-218ENST00000560202 PKHD1P08F94 4074 aa6.99□□□□□ -1.29
USP3-218ENST00000560202 ETDCA0A1B0GVM5 59 aa6.99□□□□□ -1.29
USP3-218ENST00000560202 LINC00575Q6W349 94 aa6.99□□□□□ -1.29
USP3-218ENST00000560202 SCXQ7RTU7 201 aa6.99□□□□□ -1.29
USP3-218ENST00000560202 LOC110117498A0A087WWA1 95 aa6.98□□□□□ -1.29
USP3-218ENST00000560202 LINC00528Q8N1L1 170 aa6.98□□□□□ -1.29
USP3-218ENST00000560202 H7BZZ5 65 aa6.96□□□□□ -1.29
USP3-218ENST00000560202 J3QL48 77 aa6.96□□□□□ -1.29
USP3-218ENST00000560202 CXCL6P80162 114 aa6.96□□□□□ -1.29
USP3-218ENST00000560202 HAMPP81172 84 aa6.96□□□□□ -1.29
USP3-218ENST00000560202 Q6ZRX8 168 aa6.96□□□□□ -1.29
USP3-218ENST00000560202 C20orf197Q8N268 126 aa6.96□□□□□ -1.29
USP3-218ENST00000560202 FAM19A1Q7Z5A9 133 aa6.95□□□□□ -1.3
USP3-218ENST00000560202 ERC2-IT1O76042 136 aa6.94□□□□□ -1.3
USP3-218ENST00000560202 PSORS1C2Q9UIG4 136 aa6.94□□□□□ -1.3
USP3-218ENST00000560202 PRLHP81277 87 aa6.93□□□□□ -1.3
USP3-218ENST00000560202 Q9BRP9 147 aa6.93□□□□□ -1.3
USP3-218ENST00000560202 DHRS4-AS1Q9P1J3 65 aa6.93□□□□□ -1.3
USP3-218ENST00000560202 RBM3P98179 157 aaKnown RBP6.93□□□□□ -1.3
USP3-218ENST00000560202 H0Y9J4 135 aa6.92□□□□□ -1.3
USP3-218ENST00000560202 Q6ZQT0 140 aa6.92□□□□□ -1.3
USP3-218ENST00000560202 UBE2AP49459 152 aa6.91□□□□□ -1.3
USP3-218ENST00000560202 C1orf137Q5JT78 98 aa6.91□□□□□ -1.3
USP3-218ENST00000560202 Q6ZQY7 126 aa6.91□□□□□ -1.3
USP3-218ENST00000560202 APOBP04114 4563 aaKnown RBP6.91□□□□□ -1.3
USP3-218ENST00000560202 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP6.9□□□□□ -1.3
USP3-218ENST00000560202 LINC01547P58512 204 aaPredicted RBP6.9□□□□□ -1.31
USP3-218ENST00000560202 KRTAP13-1Q8IUC0 172 aa6.9□□□□□ -1.31
USP3-218ENST00000560202 HIGD2AQ9BW72 106 aa6.9□□□□□ -1.31
USP3-218ENST00000560202 C4orf48Q5BLP8 95 aa6.89□□□□□ -1.31
USP3-218ENST00000560202 Q6ZVQ6 151 aa6.87□□□□□ -1.31
USP3-218ENST00000560202 ST20-AS1Q8NBB2 130 aa6.87□□□□□ -1.31
USP3-218ENST00000560202 IGLV7-43P04211 117 aa6.86□□□□□ -1.31
USP3-218ENST00000560202 LAMTOR3Q9UHA4 124 aa6.86□□□□□ -1.31
USP3-218ENST00000560202 ZNF861PO60384 105 aa6.85□□□□□ -1.31
USP3-218ENST00000560202 DEFB105AQ8NG35 78 aa6.85□□□□□ -1.31
USP3-218ENST00000560202 TRBV7-4A0A0J9YYF1 115 aa6.84□□□□□ -1.31
USP3-218ENST00000560202 F8WEM9 126 aa6.84□□□□□ -1.31
USP3-218ENST00000560202 IGLV5-48A0A075B6I7 105 aa6.84□□□□□ -1.32
USP3-218ENST00000560202 FP248Q71RG6 208 aaPredicted RBP6.84□□□□□ -1.32
USP3-218ENST00000560202 Q8N377 158 aa6.84□□□□□ -1.32
USP3-218ENST00000560202 SMR3BP02814 79 aaPredicted RBP6.83□□□□□ -1.32
USP3-218ENST00000560202 EPPK1P58107 5090 aaKnown RBP6.82□□□□□ -1.32
USP3-218ENST00000560202 RPL37AP61513 92 aaKnown RBP6.81□□□□□ -1.32
USP3-218ENST00000560202 CDK2AP2O75956 126 aa6.81□□□□□ -1.32
USP3-218ENST00000560202 FAT1Q14517 4588 aa6.8□□□□□ -1.32
USP3-218ENST00000560202 SRRM2Q9UQ35 2752 aaKnown RBP6.8□□□□□ -1.32
USP3-218ENST00000560202 NREPQ16612 68 aa6.8□□□□□ -1.32
USP3-218ENST00000560202 LCE2AQ5TA79 106 aaPredicted RBP6.8□□□□□ -1.32
USP3-218ENST00000560202 TMEM254Q8TBM7 123 aa6.8□□□□□ -1.32
USP3-218ENST00000560202 VPS13BQ7Z7G8 4022 aa6.79□□□□□ -1.32
USP3-218ENST00000560202 SPRR4Q96PI1 79 aa6.79□□□□□ -1.32
USP3-218ENST00000560202 ZNF706Q9Y5V0 76 aaPredicted RBP6.79□□□□□ -1.32
USP3-218ENST00000560202 A0A1B0GW54 56 aa6.78□□□□□ -1.32
USP3-218ENST00000560202 SPRR1BP22528 89 aa6.78□□□□□ -1.32
USP3-218ENST00000560202 SNURFQ9Y675 71 aa6.78□□□□□ -1.32
USP3-218ENST00000560202 BPY2O14599 106 aa6.77□□□□□ -1.32
USP3-218ENST00000560202 SMIM29Q86T20 159 aa6.77□□□□□ -1.32
USP3-218ENST00000560202 V9GYY9 64 aa6.77□□□□□ -1.32
USP3-218ENST00000560202 RYR1P21817 5038 aa6.77□□□□□ -1.33
USP3-218ENST00000560202 C1orf195Q5TG92 126 aa6.77□□□□□ -1.33
USP3-218ENST00000560202 HSPG2P98160 4391 aa6.76□□□□□ -1.33
USP3-218ENST00000560202 A0A0U1RQV1 116 aa6.75□□□□□ -1.33
USP3-218ENST00000560202 LINC00483Q53H64 154 aa6.75□□□□□ -1.33
USP3-218ENST00000560202 KRTAP10-4P60372 401 aaPredicted RBP6.74□□□□□ -1.33
USP3-218ENST00000560202 FAM229AH3BQW9 127 aa6.74□□□□□ -1.33
USP3-218ENST00000560202 BRK1Q8WUW1 75 aa6.74□□□□□ -1.33
USP3-218ENST00000560202 SPINK6Q6UWN8 80 aa6.73□□□□□ -1.33
USP3-218ENST00000560202 OCR1Q9BZK8 76 aa6.73□□□□□ -1.33
USP3-218ENST00000560202 ANAPC11Q9NYG5 84 aa6.73□□□□□ -1.33
USP3-218ENST00000560202 KIAA1109Q2LD37 5005 aa6.72□□□□□ -1.33
USP3-218ENST00000560202 PLA2G1BP04054 148 aaKnown RBP6.71□□□□□ -1.33
USP3-218ENST00000560202 LCE2CQ5TA81 110 aa6.71□□□□□ -1.33
USP3-218ENST00000560202 PRR15Q8IV56 129 aa6.71□□□□□ -1.34
USP3-218ENST00000560202 IGLV8-61A0A075B6I0 122 aa6.7□□□□□ -1.34
USP3-218ENST00000560202 SEC61GP60059 68 aa6.69□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 72.5 ms