RNA–Protein interactions for RNA: ENST00000544506.1

LEMD3-205, Transcript of LEM domain containing 3, human

TSL 5

Gene LEMD3, Length 412 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
LEMD3-205	ENST00000544506	LY6G6C	O95867	125 aa		0.78	□□□□□ -2.28
LEMD3-205	ENST00000544506	RPL37A	P61513	92 aa	Known RBP	0.78	□□□□□ -2.28
LEMD3-205	ENST00000544506	DEFB133	Q30KQ1	61 aa		0.78	□□□□□ -2.28
LEMD3-205	ENST00000544506	DEFB109B	Q30KR1	87 aa		0.78	□□□□□ -2.28
LEMD3-205	ENST00000544506	COX6B2	Q6YFQ2	88 aa		0.78	□□□□□ -2.28
LEMD3-205	ENST00000544506	C5orf56	Q8N8D9	126 aa		0.78	□□□□□ -2.28
LEMD3-205	ENST00000544506	PRO3102	Q9H379	93 aa		0.78	□□□□□ -2.28
LEMD3-205	ENST00000544506	APC2	O95996	2303 aa		0.78	□□□□□ -2.28
LEMD3-205	ENST00000544506		Q6ZRX8	168 aa		0.77	□□□□□ -2.29
LEMD3-205	ENST00000544506	DEFB132	Q7Z7B7	95 aa		0.77	□□□□□ -2.29
LEMD3-205	ENST00000544506	PKDREJ	Q9NTG1	2253 aa		0.77	□□□□□ -2.29
LEMD3-205	ENST00000544506	CACNA1E	Q15878	2313 aa		0.77	□□□□□ -2.29
LEMD3-205	ENST00000544506	SPTBN1	Q01082	2364 aa	Known RBP	0.77	□□□□□ -2.29
LEMD3-205	ENST00000544506	WDR87	Q6ZQQ6	2873 aa		0.76	□□□□□ -2.29
LEMD3-205	ENST00000544506	MAP1B	P46821	2468 aa	Known RBP	0.76	□□□□□ -2.29
LEMD3-205	ENST00000544506	TPR	P12270	2363 aa	Known RBP	0.76	□□□□□ -2.29
LEMD3-205	ENST00000544506	ACACA	Q13085	2346 aa		0.76	□□□□□ -2.29
LEMD3-205	ENST00000544506		A8MTW9	85 aa		0.76	□□□□□ -2.29
LEMD3-205	ENST00000544506		G3V318	75 aa		0.76	□□□□□ -2.29
LEMD3-205	ENST00000544506		Q96NJ1	140 aa		0.76	□□□□□ -2.29
LEMD3-205	ENST00000544506	LINC00472	Q9H8W2	130 aa		0.76	□□□□□ -2.29
LEMD3-205	ENST00000544506	PRO0255	Q9UI72	69 aa		0.76	□□□□□ -2.29
LEMD3-205	ENST00000544506	CEP250	Q9BV73	2442 aa		0.76	□□□□□ -2.29
LEMD3-205	ENST00000544506	FAM186A	A6NE01	2351 aa		0.75	□□□□□ -2.29
LEMD3-205	ENST00000544506	ZDBF2	Q9HCK1	2354 aa		0.75	□□□□□ -2.29
LEMD3-205	ENST00000544506		A0A087WTM6	91 aa		0.75	□□□□□ -2.29
LEMD3-205	ENST00000544506	NBDY	A0A0U1RRE5	68 aa		0.75	□□□□□ -2.29
LEMD3-205	ENST00000544506	MMP24-AS1	A0A0U1RRL7	71 aa		0.75	□□□□□ -2.29
LEMD3-205	ENST00000544506	CLPSL2	Q6UWE3	100 aa		0.75	□□□□□ -2.29
LEMD3-205	ENST00000544506	KRTAP19-3	Q7Z4W3	81 aa		0.75	□□□□□ -2.29
LEMD3-205	ENST00000544506	UBE2DNL	Q8IWF7	75 aa		0.75	□□□□□ -2.29
LEMD3-205	ENST00000544506	PLAC4	Q8WY50	150 aa		0.75	□□□□□ -2.29
LEMD3-205	ENST00000544506	NOP10	Q9NPE3	64 aa	Known RBP	0.75	□□□□□ -2.29
LEMD3-205	ENST00000544506	NCOR1	O75376	2440 aa		0.75	□□□□□ -2.29
LEMD3-205	ENST00000544506	SPTA1	P02549	2419 aa		0.75	□□□□□ -2.29
LEMD3-205	ENST00000544506	WNK1	Q9H4A3	2382 aa		0.75	□□□□□ -2.29
LEMD3-205	ENST00000544506	DEFB1	P60022	68 aa		0.74	□□□□□ -2.29
LEMD3-205	ENST00000544506	RPL37	P61927	97 aa	Known RBP	0.74	□□□□□ -2.29
LEMD3-205	ENST00000544506	LELP1	Q5T871	98 aa		0.74	□□□□□ -2.29
LEMD3-205	ENST00000544506	ANKRD17	O75179	2603 aa	Known RBP	0.74	□□□□□ -2.29
LEMD3-205	ENST00000544506	PTPRZ1	P23471	2315 aa	Predicted RBP	0.73	□□□□□ -2.29
LEMD3-205	ENST00000544506	AKAP6	Q13023	2319 aa		0.73	□□□□□ -2.29
LEMD3-205	ENST00000544506	PRPF8	Q6P2Q9	2335 aa	Known RBP eCLIP	0.73	□□□□□ -2.29
LEMD3-205	ENST00000544506	CACNA1H	O95180	2353 aa		0.73	□□□□□ -2.29
LEMD3-205	ENST00000544506	INE1	O15225	51 aa		0.73	□□□□□ -2.29
LEMD3-205	ENST00000544506	SPRR1A	P35321	89 aa		0.73	□□□□□ -2.29
LEMD3-205	ENST00000544506	PRLH	P81277	87 aa		0.73	□□□□□ -2.29
LEMD3-205	ENST00000544506	H1FX-AS1	Q4G0G2	97 aa		0.73	□□□□□ -2.29
LEMD3-205	ENST00000544506	SPTBN2	O15020	2390 aa		0.72	□□□□□ -2.29
LEMD3-205	ENST00000544506	ZFHX3	Q15911	3703 aa		0.72	□□□□□ -2.29
LEMD3-205	ENST00000544506		A0A0C4DFX4	3053 aa		0.72	□□□□□ -2.29
LEMD3-205	ENST00000544506	MGA	Q8IWI9	3026 aa		0.72	□□□□□ -2.29
LEMD3-205	ENST00000544506	SPART-AS1	P0CW21	52 aa		0.72	□□□□□ -2.29
LEMD3-205	ENST00000544506	DEFB130B	P0DP73	79 aa		0.72	□□□□□ -2.29
LEMD3-205	ENST00000544506	DEFB130A	P0DP74	79 aa		0.72	□□□□□ -2.29
LEMD3-205	ENST00000544506	SPRR1B	P22528	89 aa		0.72	□□□□□ -2.29
LEMD3-205	ENST00000544506	C10orf99	Q6UWK7	81 aa		0.72	□□□□□ -2.29
LEMD3-205	ENST00000544506	PCNX1	Q96RV3	2341 aa		0.72	□□□□□ -2.29
LEMD3-205	ENST00000544506		H3BNG1	76 aa		0.71	□□□□□ -2.3
LEMD3-205	ENST00000544506	SPINK1	P00995	79 aa		0.71	□□□□□ -2.3
LEMD3-205	ENST00000544506	CSPG4	Q6UVK1	2322 aa		0.71	□□□□□ -2.3
LEMD3-205	ENST00000544506		A0A096LPF7	62 aa		0.7	□□□□□ -2.3
LEMD3-205	ENST00000544506		H0YAA0	97 aa		0.7	□□□□□ -2.3
LEMD3-205	ENST00000544506	DEFB136	Q30KP8	78 aa		0.7	□□□□□ -2.3
LEMD3-205	ENST00000544506	APLN	Q9ULZ1	77 aa		0.7	□□□□□ -2.3
LEMD3-205	ENST00000544506	CREBBP	Q92793	2442 aa		0.69	□□□□□ -2.3
LEMD3-205	ENST00000544506	IGF2R	P11717	2491 aa		0.69	□□□□□ -2.3
LEMD3-205	ENST00000544506		A0A096LNI7	61 aa		0.69	□□□□□ -2.3
LEMD3-205	ENST00000544506	LINC01556	Q5JQF7	62 aa		0.69	□□□□□ -2.3
LEMD3-205	ENST00000544506	SPINK6	Q6UWN8	80 aa		0.69	□□□□□ -2.3
LEMD3-205	ENST00000544506		U3KQA8	63 aa		0.69	□□□□□ -2.3
LEMD3-205	ENST00000544506	GVINP1	Q7Z2Y8	2422 aa		0.69	□□□□□ -2.3
LEMD3-205	ENST00000544506	SPG11	Q96JI7	2443 aa		0.69	□□□□□ -2.3
LEMD3-205	ENST00000544506	C2CD3	Q4AC94	2353 aa		0.69	□□□□□ -2.3
LEMD3-205	ENST00000544506	SPTAN1	Q13813	2472 aa	Known RBP	0.69	□□□□□ -2.3
LEMD3-205	ENST00000544506	SPTBN4	Q9H254	2564 aa		0.68	□□□□□ -2.3
LEMD3-205	ENST00000544506	HTN3	P15516	51 aa		0.68	□□□□□ -2.3
LEMD3-205	ENST00000544506	DEFB123	Q8N688	67 aa		0.68	□□□□□ -2.3
LEMD3-205	ENST00000544506	FAM208B	Q5VWN6	2430 aa		0.68	□□□□□ -2.3
LEMD3-205	ENST00000544506	CHD7	Q9P2D1	2997 aa		0.68	□□□□□ -2.3
LEMD3-205	ENST00000544506	NBAS	A2RRP1	2371 aa		0.68	□□□□□ -2.3
LEMD3-205	ENST00000544506	EP300	Q09472	2414 aa	Predicted RBP	0.67	□□□□□ -2.3
LEMD3-205	ENST00000544506	TNRC18	O15417	2968 aa	Predicted RBP	0.67	□□□□□ -2.3
LEMD3-205	ENST00000544506	UBR5	O95071	2799 aa	Predicted RBP	0.67	□□□□□ -2.3
LEMD3-205	ENST00000544506		K7EIL1	84 aa		0.67	□□□□□ -2.3
LEMD3-205	ENST00000544506	ANKHD1	Q8IWZ3	2542 aa	Known RBP	0.67	□□□□□ -2.3
LEMD3-205	ENST00000544506	AHNAK2	Q8IVF2	5795 aa		0.66	□□□□□ -2.3
LEMD3-205	ENST00000544506		A0A0D9SG42	100 aa		0.66	□□□□□ -2.3
LEMD3-205	ENST00000544506		M0QZ58	72 aa		0.66	□□□□□ -2.3
LEMD3-205	ENST00000544506	DEFB124	Q8NES8	71 aa		0.66	□□□□□ -2.3
LEMD3-205	ENST00000544506		S4R3F8	94 aa		0.66	□□□□□ -2.3
LEMD3-205	ENST00000544506	TENM2	Q9NT68	2774 aa		0.66	□□□□□ -2.3
LEMD3-205	ENST00000544506	CEP350	Q5VT06	3117 aa		0.66	□□□□□ -2.3
LEMD3-205	ENST00000544506	ALMS1	Q8TCU4	4167 aa		0.65	□□□□□ -2.3
LEMD3-205	ENST00000544506	SON	P18583	2426 aa	Known RBP	0.65	□□□□□ -2.31
LEMD3-205	ENST00000544506	ZNF462	Q96JM2	2506 aa		0.65	□□□□□ -2.31
LEMD3-205	ENST00000544506	NCOR2	Q9Y618	2525 aa		0.65	□□□□□ -2.31
LEMD3-205	ENST00000544506	DEFB135	Q30KP9	77 aa		0.65	□□□□□ -2.31
LEMD3-205	ENST00000544506	C10orf95	Q9H7T3	257 aa		0.65	□□□□□ -2.31
LEMD3-205	ENST00000544506	PIEZO2	Q9H5I5	2752 aa		0.65	□□□□□ -2.31

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