RNA–Protein interactions for RNA: ENST00000540469.5

SFSWAP-209, Transcript of splicing factor SWAP, humanhuman

TSL 3

Gene SFSWAP, Length 3,536 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SFSWAP-209ENST00000540469 CD164Q04900 197 aa8.25□□□□□ -1.09
SFSWAP-209ENST00000540469 UBE2AP49459 152 aa8.24□□□□□ -1.09
SFSWAP-209ENST00000540469 RBM12B-AS1Q9P1G2 102 aa8.24□□□□□ -1.09
SFSWAP-209ENST00000540469 CASC2Q6XLA1 102 aa8.22□□□□□ -1.09
SFSWAP-209ENST00000540469 A6NED7 52 aa8.22□□□□□ -1.09
SFSWAP-209ENST00000540469 LINC01556Q5JQF7 62 aa8.22□□□□□ -1.09
SFSWAP-209ENST00000540469 IGFL1Q6UW32 110 aa8.22□□□□□ -1.09
SFSWAP-209ENST00000540469 REG3GQ6UW15 175 aa8.21□□□□□ -1.09
SFSWAP-209ENST00000540469 DEFB131BA0A096LNP1 70 aa8.21□□□□□ -1.1
SFSWAP-209ENST00000540469 PRLHP81277 87 aa8.21□□□□□ -1.1
SFSWAP-209ENST00000540469 Q5VV11 94 aa8.21□□□□□ -1.1
SFSWAP-209ENST00000540469 PKD1L1Q8TDX9 2849 aa8.2□□□□□ -1.1
SFSWAP-209ENST00000540469 LIMD2Q9BT23 127 aa8.2□□□□□ -1.1
SFSWAP-209ENST00000540469 KRTAP4-16G5E9R7 235 aaPredicted RBP8.2□□□□□ -1.1
SFSWAP-209ENST00000540469 IGKV2-24A0A0C4DH68 120 aa8.19□□□□□ -1.1
SFSWAP-209ENST00000540469 C16orf90A8MZG2 172 aa8.18□□□□□ -1.1
SFSWAP-209ENST00000540469 H3BNG1 76 aa8.18□□□□□ -1.1
SFSWAP-209ENST00000540469 SPRR1AP35321 89 aa8.18□□□□□ -1.1
SFSWAP-209ENST00000540469 H0Y9J4 135 aa8.18□□□□□ -1.1
SFSWAP-209ENST00000540469 A0A096LNI7 61 aa8.17□□□□□ -1.1
SFSWAP-209ENST00000540469 CASC10Q5T4H9 136 aa8.17□□□□□ -1.1
SFSWAP-209ENST00000540469 PLA2G2DQ9UNK4 145 aa8.17□□□□□ -1.1
SFSWAP-209ENST00000540469 Q8N9P0 234 aaPredicted RBP8.16□□□□□ -1.1
SFSWAP-209ENST00000540469 TLX1NBP0CAT3 122 aa8.16□□□□□ -1.1
SFSWAP-209ENST00000540469 C11orf45Q8TAV5 145 aa8.15□□□□□ -1.11
SFSWAP-209ENST00000540469 PCOTHQ58A44 107 aa8.14□□□□□ -1.11
SFSWAP-209ENST00000540469 KTN1-AS1Q86SY8 53 aa8.13□□□□□ -1.11
SFSWAP-209ENST00000540469 LINC00588Q9Y4M8 146 aa8.13□□□□□ -1.11
SFSWAP-209ENST00000540469 IGLV5-37A0A075B6J1 123 aa8.13□□□□□ -1.11
SFSWAP-209ENST00000540469 OXLD1Q5BKU9 147 aa8.13□□□□□ -1.11
SFSWAP-209ENST00000540469 SPANXA2-OT1Q8N9U9 137 aa8.13□□□□□ -1.11
SFSWAP-209ENST00000540469 H3BPC8 53 aa8.12□□□□□ -1.11
SFSWAP-209ENST00000540469 KRTAP7-1Q8IUC3 87 aa8.12□□□□□ -1.11
SFSWAP-209ENST00000540469 COA5Q86WW8 74 aa8.11□□□□□ -1.11
SFSWAP-209ENST00000540469 LCA10Q71F78 164 aa8.1□□□□□ -1.11
SFSWAP-209ENST00000540469 DNAH10OSP0CZ25 163 aa8.09□□□□□ -1.11
SFSWAP-209ENST00000540469 KRTAP29-1A8MX34 341 aaPredicted RBP8.08□□□□□ -1.12
SFSWAP-209ENST00000540469 CNBPP62633 177 aaKnown RBP8.08□□□□□ -1.12
SFSWAP-209ENST00000540469 KRTAP24-1Q3LI83 254 aa8.08□□□□□ -1.12
SFSWAP-209ENST00000540469 SPAG11AQ6PDA7 123 aa8.08□□□□□ -1.12
SFSWAP-209ENST00000540469 A8MWP4 228 aa8.08□□□□□ -1.12
SFSWAP-209ENST00000540469 NDUFS5O43920 106 aa8.08□□□□□ -1.12
SFSWAP-209ENST00000540469 TENM3Q9P273 2699 aa8.07□□□□□ -1.12
SFSWAP-209ENST00000540469 ATP11AUNQ6ZP68 121 aa8.07□□□□□ -1.12
SFSWAP-209ENST00000540469 SRRM2Q9UQ35 2752 aaKnown RBP8.06□□□□□ -1.12
SFSWAP-209ENST00000540469 Q75L30 129 aa8.04□□□□□ -1.12
SFSWAP-209ENST00000540469 LOC101927531A0A1B0GV80 90 aa8.03□□□□□ -1.12
SFSWAP-209ENST00000540469 C9orf163Q8N9P6 203 aa8.02□□□□□ -1.13
SFSWAP-209ENST00000540469 C4orf48Q5BLP8 95 aa8.01□□□□□ -1.13
SFSWAP-209ENST00000540469 PRAC1Q96KF2 57 aa8.01□□□□□ -1.13
SFSWAP-209ENST00000540469 IGLV8-61A0A075B6I0 122 aa8□□□□□ -1.13
SFSWAP-209ENST00000540469 IGLV7-46A0A075B6I9 117 aa7.99□□□□□ -1.13
SFSWAP-209ENST00000540469 PHF5AQ7RTV0 110 aaKnown RBP7.99□□□□□ -1.13
SFSWAP-209ENST00000540469 CDC42SE1Q9NRR8 79 aa7.99□□□□□ -1.13
SFSWAP-209ENST00000540469 KRTAP10-11P60412 298 aa7.98□□□□□ -1.13
SFSWAP-209ENST00000540469 LINC00472Q9H8W2 130 aa7.98□□□□□ -1.13
SFSWAP-209ENST00000540469 CHTF8P0CG12 524 aa7.97□□□□□ -1.13
SFSWAP-209ENST00000540469 IGLV9-49A0A0B4J1Y8 123 aa7.97□□□□□ -1.13
SFSWAP-209ENST00000540469 MMP24-AS1A0A0U1RRL7 71 aa7.97□□□□□ -1.13
SFSWAP-209ENST00000540469 CDK2AP2O75956 126 aa7.97□□□□□ -1.13
SFSWAP-209ENST00000540469 A6NN06 94 aa7.96□□□□□ -1.14
SFSWAP-209ENST00000540469 MDFIQ99750 246 aa7.96□□□□□ -1.14
SFSWAP-209ENST00000540469 IGHV6-1A0A0B4J1U7 121 aa7.95□□□□□ -1.14
SFSWAP-209ENST00000540469 CSMD3Q7Z407 3707 aa7.94□□□□□ -1.14
SFSWAP-209ENST00000540469 MOBPQ13875 183 aa7.94□□□□□ -1.14
SFSWAP-209ENST00000540469 TP53AIP1Q9HCN2 124 aa7.93□□□□□ -1.14
SFSWAP-209ENST00000540469 SPINK7P58062 85 aa7.93□□□□□ -1.14
SFSWAP-209ENST00000540469 C7orf65Q6ZTY9 151 aa7.93□□□□□ -1.14
SFSWAP-209ENST00000540469 ADM2Q7Z4H4 148 aa7.92□□□□□ -1.14
SFSWAP-209ENST00000540469 LINC01558Q9Y6Z2 57 aa7.92□□□□□ -1.14
SFSWAP-209ENST00000540469 C8orf87E5RJ46 101 aa7.91□□□□□ -1.14
SFSWAP-209ENST00000540469 H3BS24 57 aa7.9□□□□□ -1.15
SFSWAP-209ENST00000540469 UBE2DNLQ8IWF7 75 aa7.89□□□□□ -1.15
SFSWAP-209ENST00000540469 KRTAP11-1Q8IUC1 163 aa7.89□□□□□ -1.15
SFSWAP-209ENST00000540469 C8orf17Q9NRJ1 99 aa7.89□□□□□ -1.15
SFSWAP-209ENST00000540469 HRES1P13985 223 aa7.87□□□□□ -1.15
SFSWAP-209ENST00000540469 SPRR1BP22528 89 aa7.86□□□□□ -1.15
SFSWAP-209ENST00000540469 COL7A1Q02388 2944 aa7.86□□□□□ -1.15
SFSWAP-209ENST00000540469 PRR26Q8N8Z3 221 aa7.85□□□□□ -1.15
SFSWAP-209ENST00000540469 LINC00313P59037 77 aa7.85□□□□□ -1.15
SFSWAP-209ENST00000540469 STAB2Q8WWQ8 2551 aa7.84□□□□□ -1.15
SFSWAP-209ENST00000540469 SPINK6Q6UWN8 80 aa7.83□□□□□ -1.16
SFSWAP-209ENST00000540469 MRPL34Q9BQ48 92 aaKnown RBP7.82□□□□□ -1.16
SFSWAP-209ENST00000540469 C14orf177Q52M58 125 aa7.82□□□□□ -1.16
SFSWAP-209ENST00000540469 A0A1B0GVX0 72 aa7.82□□□□□ -1.16
SFSWAP-209ENST00000540469 KRTAP1-5Q9BYS1 174 aa7.81□□□□□ -1.16
SFSWAP-209ENST00000540469 DNHD1Q96M86 4753 aa7.8□□□□□ -1.16
SFSWAP-209ENST00000540469 Q6ZR54 194 aa7.8□□□□□ -1.16
SFSWAP-209ENST00000540469 TGP01266 2768 aa7.79□□□□□ -1.16
SFSWAP-209ENST00000540469 ANK2Q01484 3957 aa7.78□□□□□ -1.16
SFSWAP-209ENST00000540469 Q96NJ1 140 aa7.77□□□□□ -1.17
SFSWAP-209ENST00000540469 K7EIL1 84 aa7.77□□□□□ -1.17
SFSWAP-209ENST00000540469 PLAC8Q9NZF1 115 aa7.77□□□□□ -1.17
SFSWAP-209ENST00000540469 TENM2Q9NT68 2774 aa7.74□□□□□ -1.17
SFSWAP-209ENST00000540469 A0A087X002 238 aa7.74□□□□□ -1.17
SFSWAP-209ENST00000540469 ACYP2P14621 99 aa7.74□□□□□ -1.17
SFSWAP-209ENST00000540469 NOTCH2NLQ7Z3S9 236 aa7.74□□□□□ -1.17
SFSWAP-209ENST00000540469 ANAPC11Q9NYG5 84 aa7.74□□□□□ -1.17
SFSWAP-209ENST00000540469 A0A1B0GU69 56 aa7.72□□□□□ -1.17
SFSWAP-209ENST00000540469 ASB16-AS1Q495Z4 193 aa7.72□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 56.7 ms