RNA–Protein interactions for RNA: ENST00000539417.6

RPAIN-206, Transcript of RPA interacting protein, humanhuman

TSL 2

Gene RPAIN, Length 1,471 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RPAIN-206ENST00000539417 H7C2G1 150 aa9.08□□□□□ -0.96
RPAIN-206ENST00000539417 LINC01547P58512 204 aaPredicted RBP9.08□□□□□ -0.96
RPAIN-206ENST00000539417 SPRR1BP22528 89 aa9.08□□□□□ -0.96
RPAIN-206ENST00000539417 DEFB105AQ8NG35 78 aa9.08□□□□□ -0.96
RPAIN-206ENST00000539417 SCGB1C2P0DMR2 95 aa9.06□□□□□ -0.96
RPAIN-206ENST00000539417 PSMB2P49721 201 aa9.06□□□□□ -0.96
RPAIN-206ENST00000539417 Q1RN00 199 aa9.06□□□□□ -0.96
RPAIN-206ENST00000539417 RETNLBQ9BQ08 111 aa9.06□□□□□ -0.96
RPAIN-206ENST00000539417 H3BMG7 143 aa9.05□□□□□ -0.96
RPAIN-206ENST00000539417 LINC00575Q6W349 94 aa9.05□□□□□ -0.96
RPAIN-206ENST00000539417 SMIM29Q86T20 159 aa9.04□□□□□ -0.96
RPAIN-206ENST00000539417 PRR4Q16378 134 aa9.03□□□□□ -0.96
RPAIN-206ENST00000539417 C9orf153Q5TBE3 101 aa9.03□□□□□ -0.96
RPAIN-206ENST00000539417 IGLV5-48A0A075B6I7 105 aa9.02□□□□□ -0.96
RPAIN-206ENST00000539417 K7ERU9 68 aa9.02□□□□□ -0.96
RPAIN-206ENST00000539417 COX6CP09669 75 aa9.02□□□□□ -0.96
RPAIN-206ENST00000539417 OCIAD2Q56VL3 154 aa9.02□□□□□ -0.96
RPAIN-206ENST00000539417 SSBP3-AS1Q7Z2R9 100 aa9.02□□□□□ -0.97
RPAIN-206ENST00000539417 Q8N377 158 aa9.02□□□□□ -0.97
RPAIN-206ENST00000539417 TEX49A0A1B0GTD5 131 aa9.01□□□□□ -0.97
RPAIN-206ENST00000539417 TCL1BO95988 128 aa9.01□□□□□ -0.97
RPAIN-206ENST00000539417 PRO0461Q9UI25 63 aa9.01□□□□□ -0.97
RPAIN-206ENST00000539417 SPAG11AQ6PDA7 123 aa9□□□□□ -0.97
RPAIN-206ENST00000539417 hADV29S1A0JD25 119 aa8.99□□□□□ -0.97
RPAIN-206ENST00000539417 ATXN8Q156A1 80 aa8.99□□□□□ -0.97
RPAIN-206ENST00000539417 Q6ZQY7 126 aa8.99□□□□□ -0.97
RPAIN-206ENST00000539417 FAM218AQ96MZ4 157 aa8.99□□□□□ -0.97
RPAIN-206ENST00000539417 A0A0G2JQZ4 141 aa8.98□□□□□ -0.97
RPAIN-206ENST00000539417 TRIAP1O43715 76 aa8.98□□□□□ -0.97
RPAIN-206ENST00000539417 LAMTOR3Q9UHA4 124 aa8.98□□□□□ -0.97
RPAIN-206ENST00000539417 SLC25A20O43772 301 aa8.97□□□□□ -0.97
RPAIN-206ENST00000539417 C4orf48Q5BLP8 95 aa8.97□□□□□ -0.97
RPAIN-206ENST00000539417 J3QR89 54 aa8.95□□□□□ -0.98
RPAIN-206ENST00000539417 SPINK1P00995 79 aa8.95□□□□□ -0.98
RPAIN-206ENST00000539417 HRCT1Q6UXD1 115 aa8.95□□□□□ -0.98
RPAIN-206ENST00000539417 RNF213Q63HN8 5207 aa8.93□□□□□ -0.98
RPAIN-206ENST00000539417 ETDBQ3ZM63 59 aa8.93□□□□□ -0.98
RPAIN-206ENST00000539417 SMCPP49901 116 aaPredicted RBP8.91□□□□□ -0.98
RPAIN-206ENST00000539417 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP8.91□□□□□ -0.98
RPAIN-206ENST00000539417 MTURNQ8N3F0 131 aa8.91□□□□□ -0.98
RPAIN-206ENST00000539417 C9JAW5 83 aa8.9□□□□□ -0.98
RPAIN-206ENST00000539417 H0YGX0 51 aa8.9□□□□□ -0.98
RPAIN-206ENST00000539417 LST1O00453 97 aa8.9□□□□□ -0.98
RPAIN-206ENST00000539417 TEN1Q86WV5 123 aa8.89□□□□□ -0.99
RPAIN-206ENST00000539417 CLEC2BQ92478 149 aa8.89□□□□□ -0.99
RPAIN-206ENST00000539417 IGLV7-46A0A075B6I9 117 aa8.88□□□□□ -0.99
RPAIN-206ENST00000539417 H3BT86 120 aa8.88□□□□□ -0.99
RPAIN-206ENST00000539417 RPS29P62273 56 aaKnown RBP8.88□□□□□ -0.99
RPAIN-206ENST00000539417 ANKRD29Q8N6D5 301 aa8.88□□□□□ -0.99
RPAIN-206ENST00000539417 PPDPFLQ8WWR9 84 aa8.87□□□□□ -0.99
RPAIN-206ENST00000539417 VPS25Q9BRG1 176 aa8.87□□□□□ -0.99
RPAIN-206ENST00000539417 TRACP01848 142 aa8.85□□□□□ -0.99
RPAIN-206ENST00000539417 IGLV8-61A0A075B6I0 122 aa8.83□□□□□ -1
RPAIN-206ENST00000539417 F8WEM9 126 aa8.83□□□□□ -1
RPAIN-206ENST00000539417 A0A1B0GX51 115 aa8.82□□□□□ -1
RPAIN-206ENST00000539417 CD164Q04900 197 aa8.82□□□□□ -1
RPAIN-206ENST00000539417 IGFL1Q6UW32 110 aa8.82□□□□□ -1
RPAIN-206ENST00000539417 FP248Q71RG6 208 aaPredicted RBP8.82□□□□□ -1
RPAIN-206ENST00000539417 TPRXLQ17RH7 258 aa8.81□□□□□ -1
RPAIN-206ENST00000539417 MUC17Q685J3 4493 aa8.8□□□□□ -1
RPAIN-206ENST00000539417 KRTAP13-3Q3SY46 172 aa8.78□□□□□ -1
RPAIN-206ENST00000539417 SNCGO76070 127 aa8.77□□□□□ -1
RPAIN-206ENST00000539417 NDUFV3P56181 108 aaKnown RBP8.77□□□□□ -1
RPAIN-206ENST00000539417 LIMD2Q9BT23 127 aa8.77□□□□□ -1
RPAIN-206ENST00000539417 DNAL4O96015 105 aa8.77□□□□□ -1.01
RPAIN-206ENST00000539417 Q6JHZ5 121 aa8.76□□□□□ -1.01
RPAIN-206ENST00000539417 BAALC-AS2P0C853 105 aa8.75□□□□□ -1.01
RPAIN-206ENST00000539417 CDIP1Q9H305 208 aa8.75□□□□□ -1.01
RPAIN-206ENST00000539417 MUC2Q02817 5179 aa8.74□□□□□ -1.01
RPAIN-206ENST00000539417 C1orf195Q5TG92 126 aa8.74□□□□□ -1.01
RPAIN-206ENST00000539417 Q5XG85 94 aa8.74□□□□□ -1.01
RPAIN-206ENST00000539417 ORMDL1Q9P0S3 153 aa8.73□□□□□ -1.01
RPAIN-206ENST00000539417 TRBV7-7A0A0K0K1E9 115 aa8.72□□□□□ -1.01
RPAIN-206ENST00000539417 A0A1B0GV72 72 aa8.72□□□□□ -1.01
RPAIN-206ENST00000539417 SIGMAR1Q99720 223 aa8.7□□□□□ -1.02
RPAIN-206ENST00000539417 FAM240AA0A1B0GVK7 77 aa8.67□□□□□ -1.02
RPAIN-206ENST00000539417 A0A1W2PNM2 257 aa8.66□□□□□ -1.02
RPAIN-206ENST00000539417 TMEM256-PLSCR3K7ERE1 68 aa8.66□□□□□ -1.02
RPAIN-206ENST00000539417 GHRHP01286 108 aa8.66□□□□□ -1.02
RPAIN-206ENST00000539417 C9orf92A6NGG3 77 aa8.65□□□□□ -1.02
RPAIN-206ENST00000539417 H3BQ85 93 aa8.64□□□□□ -1.03
RPAIN-206ENST00000539417 ACYP1P07311 99 aa8.64□□□□□ -1.03
RPAIN-206ENST00000539417 Q6Q795 121 aa8.64□□□□□ -1.03
RPAIN-206ENST00000539417 ASB16-AS1Q495Z4 193 aa8.64□□□□□ -1.03
RPAIN-206ENST00000539417 XP32Q5T750 250 aa8.64□□□□□ -1.03
RPAIN-206ENST00000539417 SCGB1A1P11684 91 aa8.62□□□□□ -1.03
RPAIN-206ENST00000539417 OBSCN-AS1Q96MR7 158 aa8.62□□□□□ -1.03
RPAIN-206ENST00000539417 A0A087WSZ3 146 aa8.61□□□□□ -1.03
RPAIN-206ENST00000539417 JMJD7-PLA2G4BH0Y9G9 81 aa8.6□□□□□ -1.03
RPAIN-206ENST00000539417 PCP4P48539 62 aa8.6□□□□□ -1.03
RPAIN-206ENST00000539417 TRBV7-4A0A0J9YYF1 115 aa8.57□□□□□ -1.04
RPAIN-206ENST00000539417 Q96NJ1 140 aa8.57□□□□□ -1.04
RPAIN-206ENST00000539417 KRTAP4-1Q9BYQ7 146 aa8.57□□□□□ -1.04
RPAIN-206ENST00000539417 MT-ATP8P03928 68 aa8.55□□□□□ -1.04
RPAIN-206ENST00000539417 CCKP06307 115 aa8.55□□□□□ -1.04
RPAIN-206ENST00000539417 RBM3P98179 157 aaKnown RBP8.54□□□□□ -1.04
RPAIN-206ENST00000539417 C14orf132Q9NPU4 83 aa8.54□□□□□ -1.04
RPAIN-206ENST00000539417 SS18L2Q9UHA2 77 aa8.52□□□□□ -1.05
RPAIN-206ENST00000539417 FAT4Q6V0I7 4981 aa8.5□□□□□ -1.05
RPAIN-206ENST00000539417 SEC61BP60468 96 aaKnown RBP8.5□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 7.9 ms