RNA–Protein interactions for RNA: ENST00000530983.5

VPS28-213, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,337 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-213ENST00000530983 PRLHP81277 87 aa12.14□□□□□ -0.47
VPS28-213ENST00000530983 IGFL1Q6UW32 110 aa12.12□□□□□ -0.47
VPS28-213ENST00000530983 CNBPP62633 177 aaKnown RBP12.12□□□□□ -0.47
VPS28-213ENST00000530983 hDV103S1A0JD37 113 aa12.11□□□□□ -0.47
VPS28-213ENST00000530983 COL7A1Q02388 2944 aa12.1□□□□□ -0.47
VPS28-213ENST00000530983 STAB2Q8WWQ8 2551 aa12.08□□□□□ -0.48
VPS28-213ENST00000530983 ZCCHC13Q8WW36 166 aaKnown RBP12.08□□□□□ -0.48
VPS28-213ENST00000530983 LRCOL1A6NCL2 159 aa12.07□□□□□ -0.48
VPS28-213ENST00000530983 IGLV8-61A0A075B6I0 122 aa12.06□□□□□ -0.48
VPS28-213ENST00000530983 PSCAO43653 123 aa12.06□□□□□ -0.48
VPS28-213ENST00000530983 C1orf195Q5TG92 126 aa12.06□□□□□ -0.48
VPS28-213ENST00000530983 C1orf64Q8NEQ6 169 aa12.05□□□□□ -0.48
VPS28-213ENST00000530983 IGLV2-33A0A075B6J2 118 aaPredicted RBP12.04□□□□□ -0.48
VPS28-213ENST00000530983 KRTAP11-1Q8IUC1 163 aa12.04□□□□□ -0.48
VPS28-213ENST00000530983 HCG22E2RYF7 251 aa12.03□□□□□ -0.48
VPS28-213ENST00000530983 DEFB116Q30KQ4 102 aa12.03□□□□□ -0.48
VPS28-213ENST00000530983 MGAM2Q2M2H8 2515 aa12.03□□□□□ -0.48
VPS28-213ENST00000530983 SRRM2Q9UQ35 2752 aaKnown RBP12.03□□□□□ -0.48
VPS28-213ENST00000530983 A0A087WSZ3 146 aa12.02□□□□□ -0.49
VPS28-213ENST00000530983 CHTF8P0CG12 524 aa12.02□□□□□ -0.49
VPS28-213ENST00000530983 PHF5AQ7RTV0 110 aaKnown RBP12.01□□□□□ -0.49
VPS28-213ENST00000530983 DNAH7Q8WXX0 4024 aa12□□□□□ -0.49
VPS28-213ENST00000530983 UBE2AP49459 152 aa11.99□□□□□ -0.49
VPS28-213ENST00000530983 Q1T7F1 81 aa11.99□□□□□ -0.49
VPS28-213ENST00000530983 UBE2DNLQ8IWF7 75 aa11.99□□□□□ -0.49
VPS28-213ENST00000530983 APLNQ9ULZ1 77 aa11.98□□□□□ -0.49
VPS28-213ENST00000530983 CSMD3Q7Z407 3707 aa11.97□□□□□ -0.49
VPS28-213ENST00000530983 CYP4F30PQ9H0H9 118 aa11.97□□□□□ -0.49
VPS28-213ENST00000530983 TENM2Q9NT68 2774 aa11.96□□□□□ -0.5
VPS28-213ENST00000530983 C14orf177Q52M58 125 aa11.95□□□□□ -0.5
VPS28-213ENST00000530983 H0Y9J4 135 aa11.95□□□□□ -0.5
VPS28-213ENST00000530983 PRR4Q16378 134 aa11.95□□□□□ -0.5
VPS28-213ENST00000530983 SPRR1BP22528 89 aa11.94□□□□□ -0.5
VPS28-213ENST00000530983 DYNC2H1Q8NCM8 4307 aaKnown RBP11.94□□□□□ -0.5
VPS28-213ENST00000530983 WFDC13Q8IUB5 93 aa11.93□□□□□ -0.5
VPS28-213ENST00000530983 V9GYY9 64 aa11.93□□□□□ -0.5
VPS28-213ENST00000530983 RPL37AP61513 92 aaKnown RBP11.93□□□□□ -0.5
VPS28-213ENST00000530983 C9orf163Q8N9P6 203 aa11.91□□□□□ -0.5
VPS28-213ENST00000530983 PSPHP1O15172 72 aa11.91□□□□□ -0.5
VPS28-213ENST00000530983 PRR15Q8IV56 129 aa11.91□□□□□ -0.5
VPS28-213ENST00000530983 TRAV22A0A0B4J277 110 aa11.89□□□□□ -0.51
VPS28-213ENST00000530983 KRTAP29-1A8MX34 341 aaPredicted RBP11.88□□□□□ -0.51
VPS28-213ENST00000530983 NDUFB1O75438 58 aa11.87□□□□□ -0.51
VPS28-213ENST00000530983 PLECQ15149 4684 aaKnown RBP11.87□□□□□ -0.51
VPS28-213ENST00000530983 PANO1I0J062 215 aa11.86□□□□□ -0.51
VPS28-213ENST00000530983 B9D2Q9BPU9 175 aa11.86□□□□□ -0.51
VPS28-213ENST00000530983 LINC00472Q9H8W2 130 aa11.85□□□□□ -0.51
VPS28-213ENST00000530983 KRTAP13-1Q8IUC0 172 aa11.82□□□□□ -0.52
VPS28-213ENST00000530983 NBDYA0A0U1RRE5 68 aa11.82□□□□□ -0.52
VPS28-213ENST00000530983 A8MWP4 228 aa11.81□□□□□ -0.52
VPS28-213ENST00000530983 Q6ZRN7 208 aaPredicted RBP11.81□□□□□ -0.52
VPS28-213ENST00000530983 CASC2Q6XLA1 102 aa11.81□□□□□ -0.52
VPS28-213ENST00000530983 MP68P56378 58 aa11.8□□□□□ -0.52
VPS28-213ENST00000530983 SEC61GP60059 68 aa11.8□□□□□ -0.52
VPS28-213ENST00000530983 A8MUN3 132 aa11.78□□□□□ -0.52
VPS28-213ENST00000530983 LINC00208Q96KT6 92 aa11.78□□□□□ -0.52
VPS28-213ENST00000530983 NUPR2A6NF83 97 aa11.76□□□□□ -0.53
VPS28-213ENST00000530983 MDFIQ99750 246 aa11.76□□□□□ -0.53
VPS28-213ENST00000530983 H3BPC8 53 aa11.76□□□□□ -0.53
VPS28-213ENST00000530983 PMAIP1Q13794 54 aa11.76□□□□□ -0.53
VPS28-213ENST00000530983 SPANXA2-OT1Q8N9U9 137 aa11.75□□□□□ -0.53
VPS28-213ENST00000530983 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP11.74□□□□□ -0.53
VPS28-213ENST00000530983 H0Y9P7 68 aa11.73□□□□□ -0.53
VPS28-213ENST00000530983 SPACA4Q8TDM5 124 aa11.72□□□□□ -0.53
VPS28-213ENST00000530983 A8MU10 97 aa11.72□□□□□ -0.53
VPS28-213ENST00000530983 Q5VV11 94 aa11.71□□□□□ -0.53
VPS28-213ENST00000530983 MMP24-AS1A0A0U1RRL7 71 aa11.7□□□□□ -0.54
VPS28-213ENST00000530983 STARD9Q9P2P6 4700 aa11.69□□□□□ -0.54
VPS28-213ENST00000530983 IGLV9-49A0A0B4J1Y8 123 aa11.69□□□□□ -0.54
VPS28-213ENST00000530983 Q96NJ1 140 aa11.68□□□□□ -0.54
VPS28-213ENST00000530983 Q8N9P0 234 aaPredicted RBP11.66□□□□□ -0.54
VPS28-213ENST00000530983 VPS13DQ5THJ4 4388 aa11.66□□□□□ -0.54
VPS28-213ENST00000530983 HECTD4Q9Y4D8 3996 aa11.66□□□□□ -0.54
VPS28-213ENST00000530983 LINC00483Q53H64 154 aa11.64□□□□□ -0.55
VPS28-213ENST00000530983 A0A087WTM6 91 aa11.61□□□□□ -0.55
VPS28-213ENST00000530983 LIMD2Q9BT23 127 aa11.6□□□□□ -0.55
VPS28-213ENST00000530983 CHKB-CPT1BH3BT56 60 aa11.59□□□□□ -0.55
VPS28-213ENST00000530983 MOBPQ13875 183 aa11.59□□□□□ -0.55
VPS28-213ENST00000530983 ASB16-AS1Q495Z4 193 aa11.59□□□□□ -0.55
VPS28-213ENST00000530983 FRAS1Q86XX4 4008 aa11.59□□□□□ -0.55
VPS28-213ENST00000530983 PRKDCP78527 4128 aaKnown RBP11.58□□□□□ -0.56
VPS28-213ENST00000530983 WWC2-AS2Q96NR7 200 aa11.58□□□□□ -0.56
VPS28-213ENST00000530983 PRR15LQ9BU68 103 aa11.58□□□□□ -0.56
VPS28-213ENST00000530983 PSORS1C2Q9UIG4 136 aa11.57□□□□□ -0.56
VPS28-213ENST00000530983 DNAH8Q96JB1 4490 aa11.56□□□□□ -0.56
VPS28-213ENST00000530983 IGLV5-52A0A0A0MRZ9 124 aa11.55□□□□□ -0.56
VPS28-213ENST00000530983 RTL8CO15255 209 aa11.55□□□□□ -0.56
VPS28-213ENST00000530983 ZNF706Q9Y5V0 76 aaPredicted RBP11.55□□□□□ -0.56
VPS28-213ENST00000530983 KMT2AQ03164 3969 aa11.54□□□□□ -0.56
VPS28-213ENST00000530983 C8orf17Q9NRJ1 99 aa11.54□□□□□ -0.56
VPS28-213ENST00000530983 DNAH2Q9P225 4427 aa11.54□□□□□ -0.56
VPS28-213ENST00000530983 ANAPC11Q9NYG5 84 aa11.53□□□□□ -0.56
VPS28-213ENST00000530983 COA5Q86WW8 74 aa11.52□□□□□ -0.57
VPS28-213ENST00000530983 TP53AIP1Q9HCN2 124 aa11.51□□□□□ -0.57
VPS28-213ENST00000530983 PLAC8Q9NZF1 115 aa11.51□□□□□ -0.57
VPS28-213ENST00000530983 DNAH17Q9UFH2 4485 aa11.5□□□□□ -0.57
VPS28-213ENST00000530983 FBN3Q75N90 2809 aa11.5□□□□□ -0.57
VPS28-213ENST00000530983 A0A1B0GVX0 72 aa11.49□□□□□ -0.57
VPS28-213ENST00000530983 IGLV7-46A0A075B6I9 117 aa11.49□□□□□ -0.57
VPS28-213ENST00000530983 IGHV6-1A0A0B4J1U7 121 aa11.49□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 14.6 ms