RNA–Protein interactions for RNA: ENST00000528086.5

CD44-227, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 580 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-227ENST00000528086 PRO1933Q9H354 126 aa5.81□□□□□ -1.48
CD44-227ENST00000528086 TMA7Q9Y2S6 64 aaKnown RBP5.81□□□□□ -1.48
CD44-227ENST00000528086 Q6ZQY7 126 aa5.8□□□□□ -1.48
CD44-227ENST00000528086 PAM16Q9Y3D7 125 aa5.8□□□□□ -1.48
CD44-227ENST00000528086 SPATA45Q537H7 98 aa5.79□□□□□ -1.48
CD44-227ENST00000528086 HIST1H4GQ99525 98 aa5.79□□□□□ -1.48
CD44-227ENST00000528086 HIGD1BQ9P298 99 aa5.79□□□□□ -1.48
CD44-227ENST00000528086 IGLV8-61A0A075B6I0 122 aa5.78□□□□□ -1.48
CD44-227ENST00000528086 FAM218AQ96MZ4 157 aa5.78□□□□□ -1.48
CD44-227ENST00000528086 LIMD2Q9BT23 127 aa5.78□□□□□ -1.48
CD44-227ENST00000528086 hADV29S1A0JD25 119 aa5.77□□□□□ -1.49
CD44-227ENST00000528086 C9orf92A6NGG3 77 aa5.77□□□□□ -1.49
CD44-227ENST00000528086 SEC61BP60468 96 aaKnown RBP5.76□□□□□ -1.49
CD44-227ENST00000528086 PYY3Q5JQD4 70 aa5.76□□□□□ -1.49
CD44-227ENST00000528086 IGFL1Q6UW32 110 aa5.76□□□□□ -1.49
CD44-227ENST00000528086 NHP2Q9NX24 153 aaKnown RBP5.76□□□□□ -1.49
CD44-227ENST00000528086 A0A0U1RQV1 116 aa5.75□□□□□ -1.49
CD44-227ENST00000528086 VAMP3Q15836 100 aa5.75□□□□□ -1.49
CD44-227ENST00000528086 A0A0B4J2C4 111 aa5.74□□□□□ -1.49
CD44-227ENST00000528086 FXYD2P54710 66 aa5.74□□□□□ -1.49
CD44-227ENST00000528086 PCOTHQ58A44 107 aa5.74□□□□□ -1.49
CD44-227ENST00000528086 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP5.74□□□□□ -1.49
CD44-227ENST00000528086 VAMP8Q9BV40 100 aa5.74□□□□□ -1.49
CD44-227ENST00000528086 OCIAD2Q56VL3 154 aa5.73□□□□□ -1.49
CD44-227ENST00000528086 H3BUT2 72 aa5.72□□□□□ -1.49
CD44-227ENST00000528086 SMCPP49901 116 aaPredicted RBP5.72□□□□□ -1.49
CD44-227ENST00000528086 CEND1Q8N111 149 aa5.72□□□□□ -1.49
CD44-227ENST00000528086 KRTAP9-2Q9BYQ4 174 aa5.72□□□□□ -1.49
CD44-227ENST00000528086 TRBV7-7A0A0K0K1E9 115 aa5.71□□□□□ -1.5
CD44-227ENST00000528086 LORP23490 312 aaPredicted RBP5.71□□□□□ -1.5
CD44-227ENST00000528086 BVES-AS1Q5T3Y7 98 aa5.71□□□□□ -1.5
CD44-227ENST00000528086 LOC105371267A0A1B0GV96 52 aa5.7□□□□□ -1.5
CD44-227ENST00000528086 CLEC2BQ92478 149 aa5.7□□□□□ -1.5
CD44-227ENST00000528086 Q6JHZ5 121 aa5.69□□□□□ -1.5
CD44-227ENST00000528086 TRIAP1O43715 76 aa5.68□□□□□ -1.5
CD44-227ENST00000528086 PPDPFLQ8WWR9 84 aa5.68□□□□□ -1.5
CD44-227ENST00000528086 RAB37Q96AX2 223 aa5.68□□□□□ -1.5
CD44-227ENST00000528086 PRO1854Q9UHT4 67 aa5.68□□□□□ -1.5
CD44-227ENST00000528086 F8WEM9 126 aa5.67□□□□□ -1.5
CD44-227ENST00000528086 K7ERJ3 54 aa5.67□□□□□ -1.5
CD44-227ENST00000528086 RPL37P61927 97 aaKnown RBP5.67□□□□□ -1.5
CD44-227ENST00000528086 FLGP20930 4061 aaPredicted RBP5.67□□□□□ -1.5
CD44-227ENST00000528086 H0YGX0 51 aa5.66□□□□□ -1.5
CD44-227ENST00000528086 TCL1BO95988 128 aa5.65□□□□□ -1.5
CD44-227ENST00000528086 MT1HP80294 61 aa5.65□□□□□ -1.5
CD44-227ENST00000528086 SNHG12Q9BXW3 62 aa5.65□□□□□ -1.5
CD44-227ENST00000528086 NDUFV3P56181 108 aaKnown RBP5.64□□□□□ -1.51
CD44-227ENST00000528086 Q6Q795 121 aa5.64□□□□□ -1.51
CD44-227ENST00000528086 Q96NJ1 140 aa5.64□□□□□ -1.51
CD44-227ENST00000528086 A0A1W2PNM2 257 aa5.63□□□□□ -1.51
CD44-227ENST00000528086 HSD52Q0P140 79 aa5.63□□□□□ -1.51
CD44-227ENST00000528086 A0A1B0GX51 115 aa5.62□□□□□ -1.51
CD44-227ENST00000528086 SMIM6P0DI80 62 aa5.61□□□□□ -1.51
CD44-227ENST00000528086 TMEM238LA0A1B0GVL6 79 aa5.6□□□□□ -1.51
CD44-227ENST00000528086 A6NJY4 79 aa5.6□□□□□ -1.51
CD44-227ENST00000528086 H3BMG7 143 aa5.6□□□□□ -1.51
CD44-227ENST00000528086 SNCGO76070 127 aa5.6□□□□□ -1.51
CD44-227ENST00000528086 OBSCN-AS1Q96MR7 158 aa5.6□□□□□ -1.51
CD44-227ENST00000528086 GHRHP01286 108 aa5.59□□□□□ -1.51
CD44-227ENST00000528086 TEN1Q86WV5 123 aa5.59□□□□□ -1.51
CD44-227ENST00000528086 A0A087WSZ3 146 aa5.58□□□□□ -1.52
CD44-227ENST00000528086 FABP2P12104 132 aa5.58□□□□□ -1.52
CD44-227ENST00000528086 UQCR10Q9UDW1 63 aa5.58□□□□□ -1.52
CD44-227ENST00000528086 LST1O00453 97 aa5.57□□□□□ -1.52
CD44-227ENST00000528086 Q75L30 129 aa5.57□□□□□ -1.52
CD44-227ENST00000528086 A0A1B0GV72 72 aa5.55□□□□□ -1.52
CD44-227ENST00000528086 KRTAP16-1A8MUX0 517 aa5.54□□□□□ -1.52
CD44-227ENST00000528086 NOTCH2NLQ7Z3S9 236 aa5.54□□□□□ -1.52
CD44-227ENST00000528086 C20orf166-AS1Q96NR2 134 aa5.54□□□□□ -1.52
CD44-227ENST00000528086 A8MUU9 505 aa5.53□□□□□ -1.52
CD44-227ENST00000528086 PSMB2P49721 201 aa5.53□□□□□ -1.52
CD44-227ENST00000528086 ORMDL1Q9P0S3 153 aa5.53□□□□□ -1.52
CD44-227ENST00000528086 H3BQ85 93 aa5.52□□□□□ -1.53
CD44-227ENST00000528086 KRTAP10-6P60371 365 aaPredicted RBP5.52□□□□□ -1.53
CD44-227ENST00000528086 LINC00472Q9H8W2 130 aa5.52□□□□□ -1.53
CD44-227ENST00000528086 SS18L2Q9UHA2 77 aa5.52□□□□□ -1.53
CD44-227ENST00000528086 TRBV7-4A0A0J9YYF1 115 aa5.51□□□□□ -1.53
CD44-227ENST00000528086 DSCR10P59022 87 aa5.51□□□□□ -1.53
CD44-227ENST00000528086 KRTAP9-6A0A140TA67 174 aa5.5□□□□□ -1.53
CD44-227ENST00000528086 TSTD3H0UI37 97 aa5.5□□□□□ -1.53
CD44-227ENST00000528086 TRACP01848 142 aa5.5□□□□□ -1.53
CD44-227ENST00000528086 UBE2V1Q13404 147 aa5.5□□□□□ -1.53
CD44-227ENST00000528086 ANKRD29Q8N6D5 301 aa5.5□□□□□ -1.53
CD44-227ENST00000528086 NAA38Q9BRA0 125 aaKnown RBP5.5□□□□□ -1.53
CD44-227ENST00000528086 TMEM256-PLSCR3K7ERE1 68 aa5.49□□□□□ -1.53
CD44-227ENST00000528086 DEFB116Q30KQ4 102 aa5.49□□□□□ -1.53
CD44-227ENST00000528086 DNAL4O96015 105 aa5.48□□□□□ -1.53
CD44-227ENST00000528086 COX6CP09669 75 aa5.48□□□□□ -1.53
CD44-227ENST00000528086 CCKP06307 115 aa5.47□□□□□ -1.53
CD44-227ENST00000528086 IGKV4-1P06312 121 aa5.46□□□□□ -1.54
CD44-227ENST00000528086 ATP11AUNQ6ZP68 121 aa5.46□□□□□ -1.54
CD44-227ENST00000528086 BAALC-AS2P0C853 105 aa5.45□□□□□ -1.54
CD44-227ENST00000528086 SIGMAR1Q99720 223 aa5.45□□□□□ -1.54
CD44-227ENST00000528086 SCGB1C2P0DMR2 95 aa5.44□□□□□ -1.54
CD44-227ENST00000528086 LINC00313P59037 77 aa5.42□□□□□ -1.54
CD44-227ENST00000528086 RBM3P98179 157 aaKnown RBP5.42□□□□□ -1.54
CD44-227ENST00000528086 COX6B2Q6YFQ2 88 aa5.42□□□□□ -1.54
CD44-227ENST00000528086 PCP4L1A6NKN8 68 aa5.41□□□□□ -1.54
CD44-227ENST00000528086 FSIP2Q5CZC0 6907 aa5.41□□□□□ -1.54
CD44-227ENST00000528086 M0R143 59 aa5.4□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 90.3 ms