RNA–Protein interactions for RNA: ENST00000524288.1

SKP1-213, Transcript of S-phase kinase associated protein 1, humanhuman

TSL 1 (best)

Gene SKP1, Length 732 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKP1-213ENST00000524288 ERC2-IT1O76042 136 aa2.68□□□□□ -1.98
SKP1-213ENST00000524288 IGLV1-51P01701 117 aa2.68□□□□□ -1.98
SKP1-213ENST00000524288 FAM236CP0DP71 79 aa2.68□□□□□ -1.98
SKP1-213ENST00000524288 TOMM7Q9P0U1 55 aa2.68□□□□□ -1.98
SKP1-213ENST00000524288 USP9XQ93008 2570 aaPredicted RBP2.68□□□□□ -1.98
SKP1-213ENST00000524288 SETXQ7Z333 2677 aaKnown RBP2.68□□□□□ -1.98
SKP1-213ENST00000524288 FBN2P35556 2912 aa2.68□□□□□ -1.98
SKP1-213ENST00000524288 PDZD2O15018 2839 aa2.68□□□□□ -1.98
SKP1-213ENST00000524288 CREBBPQ92793 2442 aa2.68□□□□□ -1.98
SKP1-213ENST00000524288 ZFHX3Q15911 3703 aa2.67□□□□□ -1.98
SKP1-213ENST00000524288 MXRA5Q9NR99 2828 aa2.67□□□□□ -1.98
SKP1-213ENST00000524288 TRBV7-4A0A0J9YYF1 115 aa2.67□□□□□ -1.98
SKP1-213ENST00000524288 H7BZZ5 65 aa2.67□□□□□ -1.98
SKP1-213ENST00000524288 NDUFC1O43677 76 aa2.67□□□□□ -1.98
SKP1-213ENST00000524288 XCL1P47992 114 aa2.67□□□□□ -1.98
SKP1-213ENST00000524288 KRTAP21-3Q3LHN1 58 aa2.67□□□□□ -1.98
SKP1-213ENST00000524288 DSCR8Q96T75 97 aa2.67□□□□□ -1.98
SKP1-213ENST00000524288 USP9YO00507 2555 aaPredicted RBP2.67□□□□□ -1.98
SKP1-213ENST00000524288 MYO9AB2RTY4 2548 aa2.66□□□□□ -1.98
SKP1-213ENST00000524288 RBM3P98179 157 aaKnown RBP2.66□□□□□ -1.98
SKP1-213ENST00000524288 ENHOQ6UWT2 76 aa2.66□□□□□ -1.98
SKP1-213ENST00000524288 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP2.66□□□□□ -1.98
SKP1-213ENST00000524288 Q8NDZ9 215 aa2.66□□□□□ -1.98
SKP1-213ENST00000524288 CELSR2Q9HCU4 2923 aa2.65□□□□□ -1.98
SKP1-213ENST00000524288 VPS13CQ709C8 3753 aa2.65□□□□□ -1.99
SKP1-213ENST00000524288 TRAV23DV6A0A075B6W5 121 aa2.65□□□□□ -1.99
SKP1-213ENST00000524288 WFDC9Q8NEX5 89 aa2.65□□□□□ -1.99
SKP1-213ENST00000524288 PRO0255Q9UI72 69 aa2.65□□□□□ -1.99
SKP1-213ENST00000524288 MAP1AP78559 2803 aaPredicted RBP2.65□□□□□ -1.99
SKP1-213ENST00000524288 ZANQ9Y493 2812 aa2.65□□□□□ -1.99
SKP1-213ENST00000524288 CRYBG3Q68DQ2 2970 aa2.65□□□□□ -1.99
SKP1-213ENST00000524288 TENM4Q6N022 2769 aa2.65□□□□□ -1.99
SKP1-213ENST00000524288 FASNP49327 2511 aaKnown RBP2.65□□□□□ -1.99
SKP1-213ENST00000524288 TLN2Q9Y4G6 2542 aa2.65□□□□□ -1.99
SKP1-213ENST00000524288 SPG11Q96JI7 2443 aa2.64□□□□□ -1.99
SKP1-213ENST00000524288 FLNCQ14315 2725 aa2.64□□□□□ -1.99
SKP1-213ENST00000524288 HELZ2Q9BYK8 2649 aaKnown RBP2.64□□□□□ -1.99
SKP1-213ENST00000524288 WNK1Q9H4A3 2382 aa2.64□□□□□ -1.99
SKP1-213ENST00000524288 ELOF1P60002 83 aaKnown RBP2.64□□□□□ -1.99
SKP1-213ENST00000524288 C20orf197Q8N268 126 aa2.64□□□□□ -1.99
SKP1-213ENST00000524288 WFDC10AQ9H1F0 79 aa2.64□□□□□ -1.99
SKP1-213ENST00000524288 UTP20O75691 2785 aaKnown RBP2.64□□□□□ -1.99
SKP1-213ENST00000524288 COL12A1Q99715 3063 aa2.64□□□□□ -1.99
SKP1-213ENST00000524288 APCP25054 2843 aa2.63□□□□□ -1.99
SKP1-213ENST00000524288 IGKV3OR2-268A0A0C4DH90 116 aa2.63□□□□□ -1.99
SKP1-213ENST00000524288 LCE6AA0A183 80 aa2.63□□□□□ -1.99
SKP1-213ENST00000524288 A0A1B0GW54 56 aa2.63□□□□□ -1.99
SKP1-213ENST00000524288 H3BPC8 53 aa2.63□□□□□ -1.99
SKP1-213ENST00000524288 M0R2N4 97 aa2.63□□□□□ -1.99
SKP1-213ENST00000524288 COX7BP24311 80 aa2.63□□□□□ -1.99
SKP1-213ENST00000524288 SPAG11BQ08648 103 aa2.63□□□□□ -1.99
SKP1-213ENST00000524288 HRCT1Q6UXD1 115 aa2.63□□□□□ -1.99
SKP1-213ENST00000524288 DIRC1Q969H9 104 aa2.63□□□□□ -1.99
SKP1-213ENST00000524288 C11orf68Q9H3H3 251 aaKnown RBP2.63□□□□□ -1.99
SKP1-213ENST00000524288 JMJD1CQ15652 2540 aa2.63□□□□□ -1.99
SKP1-213ENST00000524288 LRRK2Q5S007 2527 aa2.63□□□□□ -1.99
SKP1-213ENST00000524288 C2CD3Q4AC94 2353 aa2.63□□□□□ -1.99
SKP1-213ENST00000524288 ITPR3Q14573 2671 aa2.62□□□□□ -1.99
SKP1-213ENST00000524288 TRAV10A0A0B4J240 114 aa2.62□□□□□ -1.99
SKP1-213ENST00000524288 LELP1Q5T871 98 aa2.62□□□□□ -1.99
SKP1-213ENST00000524288 Q6ZQY7 126 aa2.62□□□□□ -1.99
SKP1-213ENST00000524288 KRTAP13-1Q8IUC0 172 aa2.62□□□□□ -1.99
SKP1-213ENST00000524288 LINC00269Q8N2A0 174 aa2.62□□□□□ -1.99
SKP1-213ENST00000524288 TEX15Q9BXT5 2789 aa2.62□□□□□ -1.99
SKP1-213ENST00000524288 BAHCC1Q9P281 2608 aa2.62□□□□□ -1.99
SKP1-213ENST00000524288 PTPN13Q12923 2485 aa2.62□□□□□ -1.99
SKP1-213ENST00000524288 NAV2Q8IVL1 2488 aa2.62□□□□□ -1.99
SKP1-213ENST00000524288 F8WEM9 126 aa2.61□□□□□ -1.99
SKP1-213ENST00000524288 MIFP14174 115 aa2.61□□□□□ -1.99
SKP1-213ENST00000524288 FUSP35637 526 aaKnown RBP eCLIP2.61□□□□□ -1.99
SKP1-213ENST00000524288 NREPQ16612 68 aa2.61□□□□□ -1.99
SKP1-213ENST00000524288 C9orf116Q5BN46 136 aaPredicted RBP2.61□□□□□ -1.99
SKP1-213ENST00000524288 UNQ6190/PRO20217Q6UXQ8 127 aa2.61□□□□□ -1.99
SKP1-213ENST00000524288 FP248Q71RG6 208 aaPredicted RBP2.61□□□□□ -1.99
SKP1-213ENST00000524288 LAMTOR3Q9UHA4 124 aa2.61□□□□□ -1.99
SKP1-213ENST00000524288 SVEP1Q4LDE5 3571 aa2.61□□□□□ -1.99
SKP1-213ENST00000524288 ANK3Q12955 4377 aaKnown RBP2.6□□□□□ -1.99
SKP1-213ENST00000524288 HMCN1Q96RW7 5635 aa2.6□□□□□ -1.99
SKP1-213ENST00000524288 M0R378 163 aa2.6□□□□□ -1.99
SKP1-213ENST00000524288 ANGP03950 147 aaKnown RBP2.6□□□□□ -1.99
SKP1-213ENST00000524288 DEFB130BP0DP73 79 aa2.6□□□□□ -1.99
SKP1-213ENST00000524288 DEFB130AP0DP74 79 aa2.6□□□□□ -1.99
SKP1-213ENST00000524288 HAMPP81172 84 aa2.6□□□□□ -1.99
SKP1-213ENST00000524288 KRTAP26-1Q6PEX3 210 aa2.6□□□□□ -1.99
SKP1-213ENST00000524288 CLPSL2Q6UWE3 100 aa2.6□□□□□ -1.99
SKP1-213ENST00000524288 TMEM254Q8TBM7 123 aa2.6□□□□□ -1.99
SKP1-213ENST00000524288 C6orf48Q9UBA6 75 aa2.6□□□□□ -1.99
SKP1-213ENST00000524288 GCN1Q92616 2671 aaKnown RBP2.6□□□□□ -1.99
SKP1-213ENST00000524288 IGLV5-48A0A075B6I7 105 aa2.59□□□□□ -1.99
SKP1-213ENST00000524288 H3BNG1 76 aa2.59□□□□□ -1.99
SKP1-213ENST00000524288 KRTAP6-3Q3LI67 103 aa2.59□□□□□ -1.99
SKP1-213ENST00000524288 POLQO75417 2590 aa2.58□□□□□ -2
SKP1-213ENST00000524288 UNC79Q9P2D8 2635 aa2.58□□□□□ -2
SKP1-213ENST00000524288 NBPF19A0A087WUL8 3843 aa2.58□□□□□ -2
SKP1-213ENST00000524288 FN1P02751 2386 aaKnown RBP2.58□□□□□ -2
SKP1-213ENST00000524288 ZCCHC13Q8WW36 166 aaKnown RBP2.58□□□□□ -2
SKP1-213ENST00000524288 SNURFQ9Y675 71 aa2.58□□□□□ -2
SKP1-213ENST00000524288 FLNAP21333 2647 aaKnown RBP2.58□□□□□ -2
SKP1-213ENST00000524288 HECTD1Q9ULT8 2610 aa2.58□□□□□ -2
SKP1-213ENST00000524288 A0A096LPF7 62 aa2.57□□□□□ -2
Retrieved 100 of 20,778 RNA–protein pairs in 100.5 ms