RNA–Protein interactions for RNA: ENST00000524288.1

SKP1-213, Transcript of S-phase kinase associated protein 1, humanhuman

TSL 1 (best)

Gene SKP1, Length 732 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKP1-213ENST00000524288 AEBP2Q6ZN18 517 aaPredicted RBP31.57■■■□□ 2.64
SKP1-213ENST00000524288 CHIC1Q5VXU3 224 aa30.45■■■□□ 2.47
SKP1-213ENST00000524288 SENP3Q9H4L4 574 aaPredicted RBP27■■□□□ 1.91
SKP1-213ENST00000524288 PHF23Q9BUL5 403 aaPredicted RBP26.64■■□□□ 1.86
SKP1-213ENST00000524288 FOXD1Q16676 465 aa25.02■■□□□ 1.6
SKP1-213ENST00000524288 PLPPR3Q6T4P5 718 aa24.56■■□□□ 1.52
SKP1-213ENST00000524288 PPP6R1Q9UPN7 881 aa23.64■■□□□ 1.37
SKP1-213ENST00000524288 ADRA2BP18089 450 aa23.6■■□□□ 1.37
SKP1-213ENST00000524288 PIAS4Q8N2W9 510 aaPredicted RBP23.5■■□□□ 1.35
SKP1-213ENST00000524288 MSH5O43196 834 aa23.38■■□□□ 1.33
SKP1-213ENST00000524288 POTEDQ86YR6 584 aa22.03■■□□□ 1.12
SKP1-213ENST00000524288 SCAF1Q9H7N4 1312 aaKnown RBP21.77■■□□□ 1.07
SKP1-213ENST00000524288 MAPK8IP2Q13387 824 aaPredicted RBP21.52■■□□□ 1.04
SKP1-213ENST00000524288 PPP4R3CPQ6ZMV5 832 aa21.51■■□□□ 1.03
SKP1-213ENST00000524288 DMRT2Q9Y5R5 561 aa21.44■■□□□ 1.02
SKP1-213ENST00000524288 CNKSR2Q8WXI2 1034 aa21.08■□□□□ 0.97
SKP1-213ENST00000524288 NCBP3Q53F19 620 aaKnown RBP20.9■□□□□ 0.94
SKP1-213ENST00000524288 HOXD11P31277 338 aaPredicted RBP20.83■□□□□ 0.93
SKP1-213ENST00000524288 RNF216Q9NWF9 866 aaPredicted RBP20.79■□□□□ 0.92
SKP1-213ENST00000524288 NPM3O75607 178 aaKnown RBP20.49■□□□□ 0.87
SKP1-213ENST00000524288 DCAF8L1A6NGE4 600 aa20.47■□□□□ 0.87
SKP1-213ENST00000524288 KCNA4P22459 653 aa20.42■□□□□ 0.86
SKP1-213ENST00000524288 DNAJC5BQ9UF47 199 aa20.15■□□□□ 0.82
SKP1-213ENST00000524288 RNF39Q9H2S5 420 aa19.93■□□□□ 0.78
SKP1-213ENST00000524288 GRWD1Q9BQ67 446 aaKnown RBP eCLIP19.8■□□□□ 0.765e-10■□□□□ 8
SKP1-213ENST00000524288 CACNB1Q02641 598 aaPredicted RBP19.74■□□□□ 0.75
SKP1-213ENST00000524288 C1QBPQ07021 282 aaKnown RBP19.71■□□□□ 0.75
SKP1-213ENST00000524288 SLC4A2P04920 1241 aa19.45■□□□□ 0.7
SKP1-213ENST00000524288 U3KPZ7 1027 aaPredicted RBP19.42■□□□□ 0.7
SKP1-213ENST00000524288 SLC4A1APQ9BWU0 796 aaKnown RBP19.41■□□□□ 0.7
SKP1-213ENST00000524288 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP19.14■□□□□ 0.65
SKP1-213ENST00000524288 HNRNPUL2Q1KMD3 747 aaKnown RBP19.14■□□□□ 0.65
SKP1-213ENST00000524288 APLP2Q06481 763 aa19.08■□□□□ 0.64
SKP1-213ENST00000524288 MYCNP04198 464 aaPredicted RBP19.02■□□□□ 0.64
SKP1-213ENST00000524288 SAMD1Q6SPF0 538 aaPredicted RBP19.01■□□□□ 0.63
SKP1-213ENST00000524288 FOXD4L1Q9NU39 408 aa19.01■□□□□ 0.63
SKP1-213ENST00000524288 CAPN15O75808 1086 aa18.97■□□□□ 0.63
SKP1-213ENST00000524288 SPINK5Q9NQ38 1064 aaPredicted RBP18.97■□□□□ 0.63
SKP1-213ENST00000524288 ZNF219Q9P2Y4 722 aaPredicted RBP18.84■□□□□ 0.61
SKP1-213ENST00000524288 DSG3P32926 999 aa18.78■□□□□ 0.6
SKP1-213ENST00000524288 ZBTB22O15209 634 aa18.75■□□□□ 0.59
SKP1-213ENST00000524288 TRHP20396 242 aaPredicted RBP18.73■□□□□ 0.59
SKP1-213ENST00000524288 ABCB7O75027 752 aa18.5■□□□□ 0.55
SKP1-213ENST00000524288 ATXN8OSP0DMR3 200 aa18.46■□□□□ 0.55
SKP1-213ENST00000524288 ATF5Q9Y2D1 282 aaPredicted RBP18.41■□□□□ 0.54
SKP1-213ENST00000524288 POLA2Q14181 598 aa18.34■□□□□ 0.53
SKP1-213ENST00000524288 CSRNP3Q8WYN3 585 aa18.27■□□□□ 0.52
SKP1-213ENST00000524288 EHMT2Q96KQ7 1210 aa18.21■□□□□ 0.51
SKP1-213ENST00000524288 ZBTB12Q9Y330 459 aaPredicted RBP18.14■□□□□ 0.49
SKP1-213ENST00000524288 RBM42Q9BTD8 480 aaKnown RBP18.01■□□□□ 0.47
SKP1-213ENST00000524288 FBLN2P98095 1184 aa17.81■□□□□ 0.44
SKP1-213ENST00000524288 OSCARQ8IYS5 282 aa17.73■□□□□ 0.43
SKP1-213ENST00000524288 AKT1S1Q96B36 256 aa17.64■□□□□ 0.41
SKP1-213ENST00000524288 MKRN4PQ13434 485 aaPredicted RBP17.62■□□□□ 0.41
SKP1-213ENST00000524288 SPDYE2BA6NHP3 402 aa17.57■□□□□ 0.4
SKP1-213ENST00000524288 SPDYE6P0CI01 402 aa17.57■□□□□ 0.4
SKP1-213ENST00000524288 SPDYE2Q495Y8 402 aa17.57■□□□□ 0.4
SKP1-213ENST00000524288 REM2Q8IYK8 340 aaPredicted RBP17.42■□□□□ 0.38
SKP1-213ENST00000524288 POTEHQ6S545 545 aa17.37■□□□□ 0.37
SKP1-213ENST00000524288 CHRDL2Q6WN34 429 aa17.37■□□□□ 0.37
SKP1-213ENST00000524288 ZNF692Q9BU19 519 aaPredicted RBP17.36■□□□□ 0.37
SKP1-213ENST00000524288 SSUH2Q9Y2M2 353 aa17.35■□□□□ 0.37
SKP1-213ENST00000524288 PITPNM1O00562 1244 aa17.21■□□□□ 0.35
SKP1-213ENST00000524288 SPDYE1Q8NFV5 336 aaPredicted RBP17.15■□□□□ 0.34
SKP1-213ENST00000524288 PABPN1Q86U42 306 aaKnown RBP eCLIP17.1■□□□□ 0.33
SKP1-213ENST00000524288 SPDYE4A6NLX3 237 aa17.04■□□□□ 0.32
SKP1-213ENST00000524288 FXR2P51116 673 aaKnown RBP eCLIP17.02■□□□□ 0.32
SKP1-213ENST00000524288 PIP4P2Q8N4L2 257 aa17.02■□□□□ 0.32
SKP1-213ENST00000524288 CLEC11AQ9Y240 323 aa17.01■□□□□ 0.31
SKP1-213ENST00000524288 PRR29P0C7W0 189 aa16.84■□□□□ 0.29
SKP1-213ENST00000524288 STAG3Q9UJ98 1225 aa16.82■□□□□ 0.28
SKP1-213ENST00000524288 PRKAR2AP13861 404 aaKnown RBP16.77■□□□□ 0.28
SKP1-213ENST00000524288 PROM2Q8N271 834 aa16.74■□□□□ 0.27
SKP1-213ENST00000524288 CHADLQ6NUI6 762 aa16.61■□□□□ 0.25
SKP1-213ENST00000524288 HAX1O00165 279 aa16.6■□□□□ 0.25
SKP1-213ENST00000524288 FKBP8Q14318 412 aa16.56■□□□□ 0.24
SKP1-213ENST00000524288 SP7Q8TDD2 431 aaPredicted RBP16.48■□□□□ 0.23
SKP1-213ENST00000524288 CREBZFQ9NS37 354 aa16.48■□□□□ 0.23
SKP1-213ENST00000524288 FARP1Q9Y4F1 1045 aaPredicted RBP16.48■□□□□ 0.23
SKP1-213ENST00000524288 C19orf67A6NJJ6 358 aa16.45■□□□□ 0.22
SKP1-213ENST00000524288 EVX2Q03828 476 aa16.34■□□□□ 0.21
SKP1-213ENST00000524288 NPM1P06748 294 aaKnown RBP eCLIP16.28■□□□□ 0.2
SKP1-213ENST00000524288 CD44P16070 742 aaKnown RBP16.28■□□□□ 0.2
SKP1-213ENST00000524288 PLEKHG5O94827 1062 aa16.26■□□□□ 0.19
SKP1-213ENST00000524288 MNX1P50219 401 aaPredicted RBP16.26■□□□□ 0.19
SKP1-213ENST00000524288 FBXO3Q9UK99 471 aa16.22■□□□□ 0.19
SKP1-213ENST00000524288 MIER1Q8N108 512 aa16.19■□□□□ 0.18
SKP1-213ENST00000524288 CLCN6P51797 869 aa16.15■□□□□ 0.18
SKP1-213ENST00000524288 PAK3O75914 559 aaPredicted RBP16.14■□□□□ 0.17
SKP1-213ENST00000524288 PLCD3Q8N3E9 789 aa16.14■□□□□ 0.17
SKP1-213ENST00000524288 ZBTB47Q9UFB7 747 aaPredicted RBP16.1■□□□□ 0.17
SKP1-213ENST00000524288 ZRANB1Q9UGI0 708 aa16.1■□□□□ 0.17
SKP1-213ENST00000524288 ZNF579Q8NAF0 562 aaKnown RBP16.09■□□□□ 0.17
SKP1-213ENST00000524288 GABBR2O75899 941 aa16.08■□□□□ 0.16
SKP1-213ENST00000524288 VASPP50552 380 aaPredicted RBP15.94■□□□□ 0.14
SKP1-213ENST00000524288 TSPYL2Q9H2G4 693 aaPredicted RBP15.89■□□□□ 0.13
SKP1-213ENST00000524288 PHF12Q96QT6 1004 aa15.87■□□□□ 0.13
SKP1-213ENST00000524288 RASEFQ8IZ41 740 aa15.86■□□□□ 0.13
SKP1-213ENST00000524288 CCDC61Q9Y6R9 512 aa15.85■□□□□ 0.13
SKP1-213ENST00000524288 NUBP1P53384 320 aa15.84■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 13.2 ms