RNA–Protein interactions for RNA: ENST00000523088.5

HDAC3-216, Transcript of histone deacetylase 3, humanhuman

TSL 3

Gene HDAC3, Length 699 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-216ENST00000523088 C7orf33Q8WU49 177 aa4.85□□□□□ -1.63
HDAC3-216ENST00000523088 IGLV5-37A0A075B6J1 123 aa4.84□□□□□ -1.63
HDAC3-216ENST00000523088 IGKV1D-37A0A075B6S9 117 aa4.84□□□□□ -1.63
HDAC3-216ENST00000523088 H0Y9P7 68 aa4.84□□□□□ -1.63
HDAC3-216ENST00000523088 IGKV4-1P06312 121 aa4.84□□□□□ -1.63
HDAC3-216ENST00000523088 LYZP61626 148 aa4.84□□□□□ -1.63
HDAC3-216ENST00000523088 KCNQ1DNQ9H478 68 aa4.84□□□□□ -1.63
HDAC3-216ENST00000523088 KMT2AQ03164 3969 aa4.83□□□□□ -1.64
HDAC3-216ENST00000523088 SPART-AS1P0CW21 52 aa4.83□□□□□ -1.64
HDAC3-216ENST00000523088 HIGD2BQ4VC39 106 aa4.83□□□□□ -1.64
HDAC3-216ENST00000523088 SPATA8Q6RVD6 105 aa4.83□□□□□ -1.64
HDAC3-216ENST00000523088 NTM-AS1Q6ZSK4 140 aa4.83□□□□□ -1.64
HDAC3-216ENST00000523088 C20orf166-AS1Q96NR2 134 aa4.83□□□□□ -1.64
HDAC3-216ENST00000523088 BIRC6Q9NR09 4857 aa4.82□□□□□ -1.64
HDAC3-216ENST00000523088 TRGV2A0A075B6R0 118 aa4.82□□□□□ -1.64
HDAC3-216ENST00000523088 GIG44P09565 113 aaPredicted RBP4.82□□□□□ -1.64
HDAC3-216ENST00000523088 DNAH10OSP0CZ25 163 aa4.82□□□□□ -1.64
HDAC3-216ENST00000523088 PRR34Q9NV39 138 aa4.82□□□□□ -1.64
HDAC3-216ENST00000523088 IGLV8-61A0A075B6I0 122 aa4.81□□□□□ -1.64
HDAC3-216ENST00000523088 DEFB131BA0A096LNP1 70 aa4.81□□□□□ -1.64
HDAC3-216ENST00000523088 P0C880 135 aa4.81□□□□□ -1.64
HDAC3-216ENST00000523088 SPINK7P58062 85 aa4.81□□□□□ -1.64
HDAC3-216ENST00000523088 KRTAP25-1Q3LHN0 102 aa4.81□□□□□ -1.64
HDAC3-216ENST00000523088 LINC00483Q53H64 154 aa4.81□□□□□ -1.64
HDAC3-216ENST00000523088 SMIM29Q86T20 159 aa4.81□□□□□ -1.64
HDAC3-216ENST00000523088 SMIM11BQ8TCY0 68 aa4.81□□□□□ -1.64
HDAC3-216ENST00000523088 DMAC1Q96GE9 116 aa4.81□□□□□ -1.64
HDAC3-216ENST00000523088 EPPK1P58107 5090 aaKnown RBP4.81□□□□□ -1.64
HDAC3-216ENST00000523088 IGLV2-33A0A075B6J2 118 aaPredicted RBP4.8□□□□□ -1.64
HDAC3-216ENST00000523088 RPL37AP8A6NKH3 93 aa4.8□□□□□ -1.64
HDAC3-216ENST00000523088 A8MTW9 85 aa4.8□□□□□ -1.64
HDAC3-216ENST00000523088 H3BRN7 92 aa4.8□□□□□ -1.64
HDAC3-216ENST00000523088 DEFB4AO15263 64 aa4.8□□□□□ -1.64
HDAC3-216ENST00000523088 INSP01308 110 aa4.8□□□□□ -1.64
HDAC3-216ENST00000523088 Q8TAT8 98 aa4.8□□□□□ -1.64
HDAC3-216ENST00000523088 APLNQ9ULZ1 77 aa4.8□□□□□ -1.64
HDAC3-216ENST00000523088 IGFL4Q6B9Z1 124 aa4.79□□□□□ -1.64
HDAC3-216ENST00000523088 Q6ZTI0 123 aa4.79□□□□□ -1.64
HDAC3-216ENST00000523088 DNAH6Q9C0G6 4158 aa4.79□□□□□ -1.64
HDAC3-216ENST00000523088 IGLV4-3A0A075B6K6 122 aa4.78□□□□□ -1.64
HDAC3-216ENST00000523088 IGLV5-39A0A0G2JS06 123 aa4.78□□□□□ -1.64
HDAC3-216ENST00000523088 MGPP08493 103 aa4.78□□□□□ -1.64
HDAC3-216ENST00000523088 KRTAP26-1Q6PEX3 210 aa4.78□□□□□ -1.64
HDAC3-216ENST00000523088 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa4.78□□□□□ -1.64
HDAC3-216ENST00000523088 SPRR4Q96PI1 79 aa4.78□□□□□ -1.64
HDAC3-216ENST00000523088 FRAS1Q86XX4 4008 aa4.78□□□□□ -1.64
HDAC3-216ENST00000523088 TRGV4A0A0C4DH28 118 aa4.77□□□□□ -1.65
HDAC3-216ENST00000523088 UQCR11O14957 56 aa4.77□□□□□ -1.65
HDAC3-216ENST00000523088 IGKV3-20P01619 116 aa4.77□□□□□ -1.65
HDAC3-216ENST00000523088 COA5Q86WW8 74 aa4.77□□□□□ -1.65
HDAC3-216ENST00000523088 UBE2DNLQ8IWF7 75 aa4.77□□□□□ -1.65
HDAC3-216ENST00000523088 C16orf74Q96GX8 76 aa4.77□□□□□ -1.65
HDAC3-216ENST00000523088 IGLV4-60A0A075B6I1 120 aa4.76□□□□□ -1.65
HDAC3-216ENST00000523088 IGLV7-46A0A075B6I9 117 aa4.76□□□□□ -1.65
HDAC3-216ENST00000523088 IGKV2D-29A0A075B6S2 120 aaPredicted RBP4.76□□□□□ -1.65
HDAC3-216ENST00000523088 CCL18P55774 89 aa4.75□□□□□ -1.65
HDAC3-216ENST00000523088 SPINK13Q1W4C9 94 aa4.75□□□□□ -1.65
HDAC3-216ENST00000523088 VPS13DQ5THJ4 4388 aa4.73□□□□□ -1.65
HDAC3-216ENST00000523088 HECTD4Q9Y4D8 3996 aa4.73□□□□□ -1.65
HDAC3-216ENST00000523088 A0A1B0GVX0 72 aa4.73□□□□□ -1.65
HDAC3-216ENST00000523088 COX7BP24311 80 aa4.73□□□□□ -1.65
HDAC3-216ENST00000523088 DEFB1P60022 68 aa4.73□□□□□ -1.65
HDAC3-216ENST00000523088 RPL39LQ96EH5 51 aaKnown RBP4.73□□□□□ -1.65
HDAC3-216ENST00000523088 IGKV2-28A0A075B6P5 120 aa4.72□□□□□ -1.65
HDAC3-216ENST00000523088 IGHV3-64A0A075B6Q5 118 aa4.72□□□□□ -1.65
HDAC3-216ENST00000523088 LINC00959A0A1B0GUT2 108 aa4.72□□□□□ -1.65
HDAC3-216ENST00000523088 H3BNG1 76 aa4.72□□□□□ -1.65
HDAC3-216ENST00000523088 IGKV2D-28P01615 120 aa4.72□□□□□ -1.65
HDAC3-216ENST00000523088 HTN3P15516 51 aa4.72□□□□□ -1.65
HDAC3-216ENST00000523088 RPL39P62891 51 aaKnown RBP4.72□□□□□ -1.65
HDAC3-216ENST00000523088 C9orf163Q8N9P6 203 aa4.72□□□□□ -1.65
HDAC3-216ENST00000523088 DHRS4-AS1Q9P1J3 65 aa4.72□□□□□ -1.65
HDAC3-216ENST00000523088 DNAH10Q8IVF4 4471 aa4.7□□□□□ -1.66
HDAC3-216ENST00000523088 TRBV6-4A0A1B0GX49 114 aa4.7□□□□□ -1.66
HDAC3-216ENST00000523088 DEFB130BP0DP73 79 aa4.7□□□□□ -1.66
HDAC3-216ENST00000523088 DEFB130AP0DP74 79 aa4.7□□□□□ -1.66
HDAC3-216ENST00000523088 C15orf56Q8N910 161 aa4.7□□□□□ -1.66
HDAC3-216ENST00000523088 CIRBP-AS1Q8TBR5 109 aa4.7□□□□□ -1.66
HDAC3-216ENST00000523088 KRTAP23-1A1A580 65 aa4.69□□□□□ -1.66
HDAC3-216ENST00000523088 PRAC2D3DTV9 90 aa4.69□□□□□ -1.66
HDAC3-216ENST00000523088 ZNF861PO60384 105 aa4.69□□□□□ -1.66
HDAC3-216ENST00000523088 SLPIP03973 132 aa4.69□□□□□ -1.66
HDAC3-216ENST00000523088 HTN1P15515 57 aa4.69□□□□□ -1.66
HDAC3-216ENST00000523088 LINC00612Q8N6U2 182 aa4.69□□□□□ -1.66
HDAC3-216ENST00000523088 NOP10Q9NPE3 64 aaKnown RBP4.69□□□□□ -1.66
HDAC3-216ENST00000523088 LINC00315P59091 139 aa4.68□□□□□ -1.66
HDAC3-216ENST00000523088 SUMO4Q6EEV6 95 aa4.68□□□□□ -1.66
HDAC3-216ENST00000523088 NBDYA0A0U1RRE5 68 aa4.67□□□□□ -1.66
HDAC3-216ENST00000523088 A8MUU9 505 aa4.67□□□□□ -1.66
HDAC3-216ENST00000523088 LINC00158P58513 81 aa4.67□□□□□ -1.66
HDAC3-216ENST00000523088 Q5W150 140 aa4.67□□□□□ -1.66
HDAC3-216ENST00000523088 PKHD1P08F94 4074 aa4.67□□□□□ -1.66
HDAC3-216ENST00000523088 IGKV2-40A0A087WW87 121 aaPredicted RBP4.66□□□□□ -1.66
HDAC3-216ENST00000523088 A0A1B0GVY2 172 aa4.66□□□□□ -1.66
HDAC3-216ENST00000523088 M0R2N4 97 aa4.66□□□□□ -1.66
HDAC3-216ENST00000523088 IGKV2D-40P01614 121 aaPredicted RBP4.66□□□□□ -1.66
HDAC3-216ENST00000523088 RNASE3P12724 160 aaKnown RBP4.66□□□□□ -1.66
HDAC3-216ENST00000523088 LINC00575Q6W349 94 aa4.66□□□□□ -1.66
HDAC3-216ENST00000523088 NDUFAF8A1L188 74 aa4.65□□□□□ -1.67
HDAC3-216ENST00000523088 FAT2Q9NYQ8 4349 aa4.65□□□□□ -1.67
Retrieved 100 of 20,778 RNA–protein pairs in 129.7 ms