RNA–Protein interactions for RNA: ENST00000513352.1

NUP54-213, Transcript of nucleoporin 54, humanhuman

TSL 4

Gene NUP54, Length 579 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-213ENST00000513352 IGLV5-48A0A075B6I7 105 aa8.82□□□□□ -1
NUP54-213ENST00000513352 A0A1B0GX51 115 aa8.82□□□□□ -1
NUP54-213ENST00000513352 SPRR1BP22528 89 aa8.82□□□□□ -1
NUP54-213ENST00000513352 LINC01547P58512 204 aaPredicted RBP8.82□□□□□ -1
NUP54-213ENST00000513352 FAT3Q8TDW7 4589 aa8.81□□□□□ -1
NUP54-213ENST00000513352 H3BUT2 72 aa8.81□□□□□ -1
NUP54-213ENST00000513352 Q8N377 158 aa8.81□□□□□ -1
NUP54-213ENST00000513352 LYRM7Q5U5X0 104 aa8.8□□□□□ -1
NUP54-213ENST00000513352 TAX1BP3O14907 124 aa8.79□□□□□ -1
NUP54-213ENST00000513352 COL5A1-AS1Q5SY13 56 aa8.79□□□□□ -1
NUP54-213ENST00000513352 C9orf118A6NHY6 69 aa8.78□□□□□ -1
NUP54-213ENST00000513352 F8WEM9 126 aa8.78□□□□□ -1
NUP54-213ENST00000513352 OCIAD2Q56VL3 154 aa8.78□□□□□ -1
NUP54-213ENST00000513352 LST1O00453 97 aa8.77□□□□□ -1.01
NUP54-213ENST00000513352 Q8NBF4 154 aa8.77□□□□□ -1.01
NUP54-213ENST00000513352 FABP2P12104 132 aa8.76□□□□□ -1.01
NUP54-213ENST00000513352 ATXN8Q156A1 80 aa8.76□□□□□ -1.01
NUP54-213ENST00000513352 LINC00304Q8N9R0 145 aa8.76□□□□□ -1.01
NUP54-213ENST00000513352 PPDPFLQ8WWR9 84 aa8.76□□□□□ -1.01
NUP54-213ENST00000513352 ORMDL1Q9P0S3 153 aa8.76□□□□□ -1.01
NUP54-213ENST00000513352 TCL1BO95988 128 aa8.75□□□□□ -1.01
NUP54-213ENST00000513352 GHRHP01286 108 aa8.75□□□□□ -1.01
NUP54-213ENST00000513352 TRACP01848 142 aa8.75□□□□□ -1.01
NUP54-213ENST00000513352 SMIM29Q86T20 159 aa8.75□□□□□ -1.01
NUP54-213ENST00000513352 SSBP3-AS1Q7Z2R9 100 aa8.74□□□□□ -1.01
NUP54-213ENST00000513352 A0A1W2PPM0 123 aa8.73□□□□□ -1.01
NUP54-213ENST00000513352 TRBV20-1A0A075B6N2 111 aa8.7□□□□□ -1.02
NUP54-213ENST00000513352 H3BQ85 93 aa8.7□□□□□ -1.02
NUP54-213ENST00000513352 TNXBP22105 4242 aa8.69□□□□□ -1.02
NUP54-213ENST00000513352 NDUFV3P56181 108 aaKnown RBP8.69□□□□□ -1.02
NUP54-213ENST00000513352 A0A1B0GV72 72 aa8.68□□□□□ -1.02
NUP54-213ENST00000513352 TMEM256-PLSCR3K7ERE1 68 aa8.68□□□□□ -1.02
NUP54-213ENST00000513352 SPAG11AQ6PDA7 123 aa8.68□□□□□ -1.02
NUP54-213ENST00000513352 HRCT1Q6UXD1 115 aa8.68□□□□□ -1.02
NUP54-213ENST00000513352 A0A0G2JQZ4 141 aa8.67□□□□□ -1.02
NUP54-213ENST00000513352 BAALC-AS2P0C853 105 aa8.67□□□□□ -1.02
NUP54-213ENST00000513352 C9JAW5 83 aa8.66□□□□□ -1.02
NUP54-213ENST00000513352 SPCS1Q9Y6A9 102 aa8.66□□□□□ -1.02
NUP54-213ENST00000513352 H3BMG7 143 aa8.65□□□□□ -1.02
NUP54-213ENST00000513352 Q6JHZ5 121 aa8.65□□□□□ -1.02
NUP54-213ENST00000513352 SPINK1P00995 79 aa8.64□□□□□ -1.03
NUP54-213ENST00000513352 IGLV8-61A0A075B6I0 122 aa8.63□□□□□ -1.03
NUP54-213ENST00000513352 UBE2V1Q13404 147 aa8.63□□□□□ -1.03
NUP54-213ENST00000513352 IGFL1Q6UW32 110 aa8.63□□□□□ -1.03
NUP54-213ENST00000513352 ANKRD29Q8N6D5 301 aa8.62□□□□□ -1.03
NUP54-213ENST00000513352 MTURNQ8N3F0 131 aa8.61□□□□□ -1.03
NUP54-213ENST00000513352 LCE2CQ5TA81 110 aa8.6□□□□□ -1.03
NUP54-213ENST00000513352 CD164Q04900 197 aa8.59□□□□□ -1.03
NUP54-213ENST00000513352 RETNLBQ9BQ08 111 aa8.59□□□□□ -1.03
NUP54-213ENST00000513352 K7EP34 96 aa8.58□□□□□ -1.04
NUP54-213ENST00000513352 LIMD2Q9BT23 127 aa8.58□□□□□ -1.04
NUP54-213ENST00000513352 PRR4Q16378 134 aa8.57□□□□□ -1.04
NUP54-213ENST00000513352 RPS29P62273 56 aaKnown RBP8.56□□□□□ -1.04
NUP54-213ENST00000513352 H3BT86 120 aa8.55□□□□□ -1.04
NUP54-213ENST00000513352 RBM3P98179 157 aaKnown RBP8.55□□□□□ -1.04
NUP54-213ENST00000513352 GTF2H5Q6ZYL4 71 aa8.55□□□□□ -1.04
NUP54-213ENST00000513352 HERC1Q15751 4861 aa8.54□□□□□ -1.04
NUP54-213ENST00000513352 DSCR8Q96T75 97 aa8.54□□□□□ -1.04
NUP54-213ENST00000513352 TRBV7-7A0A0K0K1E9 115 aa8.53□□□□□ -1.04
NUP54-213ENST00000513352 VPS25Q9BRG1 176 aa8.53□□□□□ -1.04
NUP54-213ENST00000513352 JMJD7-PLA2G4BH0Y9G9 81 aa8.52□□□□□ -1.05
NUP54-213ENST00000513352 TEN1Q86WV5 123 aa8.52□□□□□ -1.05
NUP54-213ENST00000513352 TRBV7-4A0A0J9YYF1 115 aa8.5□□□□□ -1.05
NUP54-213ENST00000513352 CCKP06307 115 aa8.5□□□□□ -1.05
NUP54-213ENST00000513352 A0A1W2PNM2 257 aa8.49□□□□□ -1.05
NUP54-213ENST00000513352 LCE2AQ5TA79 106 aaPredicted RBP8.48□□□□□ -1.05
NUP54-213ENST00000513352 Q6Q795 121 aa8.48□□□□□ -1.05
NUP54-213ENST00000513352 C14orf132Q9NPU4 83 aa8.48□□□□□ -1.05
NUP54-213ENST00000513352 A0A087WSZ3 146 aa8.47□□□□□ -1.05
NUP54-213ENST00000513352 IGLV7-46A0A075B6I9 117 aa8.46□□□□□ -1.06
NUP54-213ENST00000513352 Q5XG85 94 aa8.46□□□□□ -1.06
NUP54-213ENST00000513352 SS18L2Q9UHA2 77 aa8.46□□□□□ -1.06
NUP54-213ENST00000513352 FP248Q71RG6 208 aaPredicted RBP8.45□□□□□ -1.06
NUP54-213ENST00000513352 PRO0461Q9UI25 63 aa8.45□□□□□ -1.06
NUP54-213ENST00000513352 LOC110117498A0A087WWA1 95 aa8.44□□□□□ -1.06
NUP54-213ENST00000513352 Q6ZQT0 140 aa8.44□□□□□ -1.06
NUP54-213ENST00000513352 OBSCN-AS1Q96MR7 158 aa8.44□□□□□ -1.06
NUP54-213ENST00000513352 PDE6GP18545 87 aa8.43□□□□□ -1.06
NUP54-213ENST00000513352 A0A1B0GV90 55 aa8.42□□□□□ -1.06
NUP54-213ENST00000513352 C1orf195Q5TG92 126 aa8.42□□□□□ -1.06
NUP54-213ENST00000513352 F8W1H4 67 aa8.41□□□□□ -1.06
NUP54-213ENST00000513352 ASB16-AS1Q495Z4 193 aa8.4□□□□□ -1.06
NUP54-213ENST00000513352 C21orf62-AS1Q17RA5 79 aa8.37□□□□□ -1.07
NUP54-213ENST00000513352 ETDBQ3ZM63 59 aa8.35□□□□□ -1.07
NUP54-213ENST00000513352 HMCN2Q8NDA2 5059 aa8.34□□□□□ -1.07
NUP54-213ENST00000513352 LORP23490 312 aaPredicted RBP8.34□□□□□ -1.07
NUP54-213ENST00000513352 TPRXLQ17RH7 258 aa8.34□□□□□ -1.07
NUP54-213ENST00000513352 SIGMAR1Q99720 223 aa8.33□□□□□ -1.08
NUP54-213ENST00000513352 CDIP1Q9H305 208 aa8.33□□□□□ -1.08
NUP54-213ENST00000513352 LOC100996750A0A140TA64 210 aa8.32□□□□□ -1.08
NUP54-213ENST00000513352 KRTAP4-6Q9BYQ5 205 aa8.32□□□□□ -1.08
NUP54-213ENST00000513352 A0A1B0GW54 56 aa8.31□□□□□ -1.08
NUP54-213ENST00000513352 C9orf92A6NGG3 77 aa8.31□□□□□ -1.08
NUP54-213ENST00000513352 IGKV4-1P06312 121 aa8.31□□□□□ -1.08
NUP54-213ENST00000513352 DEFB116Q30KQ4 102 aa8.31□□□□□ -1.08
NUP54-213ENST00000513352 KRTAP13-3Q3SY46 172 aa8.31□□□□□ -1.08
NUP54-213ENST00000513352 Q96NJ1 140 aa8.31□□□□□ -1.08
NUP54-213ENST00000513352 NREPQ16612 68 aa8.28□□□□□ -1.08
NUP54-213ENST00000513352 LINC00472Q9H8W2 130 aa8.27□□□□□ -1.09
NUP54-213ENST00000513352 J3KT08 172 aa8.23□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 48 ms