RNA–Protein interactions for RNA: ENST00000509277.5

LIMCH1-209, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 2 BASIC

Gene LIMCH1, Length 3,474 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-209ENST00000509277 EPM2AB3EWF7 344 aa5.61□□□□□ -1.51
LIMCH1-209ENST00000509277 KIAA0087Q14695 138 aa5.61□□□□□ -1.51
LIMCH1-209ENST00000509277 KRTAP26-1Q6PEX3 210 aa5.61□□□□□ -1.51
LIMCH1-209ENST00000509277 HCG22E2RYF7 251 aa5.61□□□□□ -1.51
LIMCH1-209ENST00000509277 PCOTHQ58A44 107 aa5.61□□□□□ -1.51
LIMCH1-209ENST00000509277 PDE6GP18545 87 aa5.6□□□□□ -1.51
LIMCH1-209ENST00000509277 NKAPP1Q8N9T2 125 aa5.6□□□□□ -1.51
LIMCH1-209ENST00000509277 UBE2BP63146 152 aa5.6□□□□□ -1.51
LIMCH1-209ENST00000509277 RBM12B-AS1Q9P1G2 102 aa5.6□□□□□ -1.51
LIMCH1-209ENST00000509277 H3BS24 57 aa5.6□□□□□ -1.51
LIMCH1-209ENST00000509277 IGKV4-1P06312 121 aa5.6□□□□□ -1.51
LIMCH1-209ENST00000509277 MP68P56378 58 aa5.6□□□□□ -1.51
LIMCH1-209ENST00000509277 A0A087WTM6 91 aa5.59□□□□□ -1.51
LIMCH1-209ENST00000509277 IGLV5-52A0A0A0MRZ9 124 aa5.59□□□□□ -1.51
LIMCH1-209ENST00000509277 LCE6AA0A183 80 aa5.58□□□□□ -1.52
LIMCH1-209ENST00000509277 hDV103S1A0JD37 113 aa5.58□□□□□ -1.52
LIMCH1-209ENST00000509277 CD164Q04900 197 aa5.58□□□□□ -1.52
LIMCH1-209ENST00000509277 K7EQZ3 153 aa5.57□□□□□ -1.52
LIMCH1-209ENST00000509277 RPL37AP61513 92 aaKnown RBP5.57□□□□□ -1.52
LIMCH1-209ENST00000509277 SPAG11AQ6PDA7 123 aa5.57□□□□□ -1.52
LIMCH1-209ENST00000509277 LOC110117498A0A087WWA1 95 aa5.57□□□□□ -1.52
LIMCH1-209ENST00000509277 FAM168BA1KXE4 195 aa5.57□□□□□ -1.52
LIMCH1-209ENST00000509277 Q6ZR54 194 aa5.57□□□□□ -1.52
LIMCH1-209ENST00000509277 C14orf177Q52M58 125 aa5.57□□□□□ -1.52
LIMCH1-209ENST00000509277 GVQW2A0A096LPI5 108 aaPredicted RBP5.56□□□□□ -1.52
LIMCH1-209ENST00000509277 RTL8CO15255 209 aa5.56□□□□□ -1.52
LIMCH1-209ENST00000509277 NDUFS5O43920 106 aa5.56□□□□□ -1.52
LIMCH1-209ENST00000509277 OCR1Q9BZK8 76 aa5.56□□□□□ -1.52
LIMCH1-209ENST00000509277 PRR15Q8IV56 129 aa5.55□□□□□ -1.52
LIMCH1-209ENST00000509277 ETDCA0A1B0GVM5 59 aa5.55□□□□□ -1.52
LIMCH1-209ENST00000509277 C1orf137Q5JT78 98 aa5.55□□□□□ -1.52
LIMCH1-209ENST00000509277 Q6ZRN7 208 aaPredicted RBP5.55□□□□□ -1.52
LIMCH1-209ENST00000509277 HYDINQ4G0P3 5121 aa5.55□□□□□ -1.52
LIMCH1-209ENST00000509277 KRTAP10-2P60368 255 aa5.54□□□□□ -1.52
LIMCH1-209ENST00000509277 UBE2AP49459 152 aa5.54□□□□□ -1.52
LIMCH1-209ENST00000509277 PRAC1Q96KF2 57 aa5.54□□□□□ -1.52
LIMCH1-209ENST00000509277 H0Y9J4 135 aa5.54□□□□□ -1.52
LIMCH1-209ENST00000509277 M0R378 163 aa5.52□□□□□ -1.53
LIMCH1-209ENST00000509277 KMT2CQ8NEZ4 4911 aaKnown RBP5.52□□□□□ -1.53
LIMCH1-209ENST00000509277 C16orf90A8MZG2 172 aa5.52□□□□□ -1.53
LIMCH1-209ENST00000509277 A0A087WSZ3 146 aa5.51□□□□□ -1.53
LIMCH1-209ENST00000509277 SERTAD4-AS1Q5TG53 156 aa5.51□□□□□ -1.53
LIMCH1-209ENST00000509277 LINC00167Q96N53 147 aa5.51□□□□□ -1.53
LIMCH1-209ENST00000509277 DNAH1Q9P2D7 4330 aa5.51□□□□□ -1.53
LIMCH1-209ENST00000509277 COX17Q14061 63 aa5.51□□□□□ -1.53
LIMCH1-209ENST00000509277 KTN1-AS1Q86SY8 53 aa5.51□□□□□ -1.53
LIMCH1-209ENST00000509277 PANO1I0J062 215 aa5.5□□□□□ -1.53
LIMCH1-209ENST00000509277 BCE1O60756 84 aa5.5□□□□□ -1.53
LIMCH1-209ENST00000509277 VPS13DQ5THJ4 4388 aa5.5□□□□□ -1.53
LIMCH1-209ENST00000509277 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP5.5□□□□□ -1.53
LIMCH1-209ENST00000509277 FLG2Q5D862 2391 aaPredicted RBP5.5□□□□□ -1.53
LIMCH1-209ENST00000509277 PHF5AQ7RTV0 110 aaKnown RBP5.49□□□□□ -1.53
LIMCH1-209ENST00000509277 H0Y9P7 68 aa5.49□□□□□ -1.53
LIMCH1-209ENST00000509277 IGLV6-57P01721 117 aa5.49□□□□□ -1.53
LIMCH1-209ENST00000509277 C9orf163Q8N9P6 203 aa5.49□□□□□ -1.53
LIMCH1-209ENST00000509277 DMBT1Q9UGM3 2413 aaPredicted RBP5.49□□□□□ -1.53
LIMCH1-209ENST00000509277 Q5VV11 94 aa5.49□□□□□ -1.53
LIMCH1-209ENST00000509277 SRRM2Q9UQ35 2752 aaKnown RBP5.48□□□□□ -1.53
LIMCH1-209ENST00000509277 ELOF1P60002 83 aaKnown RBP5.48□□□□□ -1.53
LIMCH1-209ENST00000509277 SMR3BP02814 79 aaPredicted RBP5.47□□□□□ -1.53
LIMCH1-209ENST00000509277 ERC2-IT1O76042 136 aa5.46□□□□□ -1.53
LIMCH1-209ENST00000509277 A0A1W2PNM2 257 aa5.46□□□□□ -1.54
LIMCH1-209ENST00000509277 Q1T7F1 81 aa5.46□□□□□ -1.54
LIMCH1-209ENST00000509277 DYNC2H1Q8NCM8 4307 aaKnown RBP5.46□□□□□ -1.54
LIMCH1-209ENST00000509277 CNBPP62633 177 aaKnown RBP5.46□□□□□ -1.54
LIMCH1-209ENST00000509277 Q8N377 158 aa5.46□□□□□ -1.54
LIMCH1-209ENST00000509277 C7orf33Q8WU49 177 aa5.46□□□□□ -1.54
LIMCH1-209ENST00000509277 KRTAP10-1P60331 282 aa5.45□□□□□ -1.54
LIMCH1-209ENST00000509277 SACSQ9NZJ4 4579 aa5.44□□□□□ -1.54
LIMCH1-209ENST00000509277 PRLHP81277 87 aa5.44□□□□□ -1.54
LIMCH1-209ENST00000509277 VPREB1P12018 145 aa5.44□□□□□ -1.54
LIMCH1-209ENST00000509277 NDUFB1O75438 58 aa5.44□□□□□ -1.54
LIMCH1-209ENST00000509277 LCA10Q71F78 164 aa5.43□□□□□ -1.54
LIMCH1-209ENST00000509277 DNAH2Q9P225 4427 aa5.43□□□□□ -1.54
LIMCH1-209ENST00000509277 CASC2Q6XLA1 102 aa5.43□□□□□ -1.54
LIMCH1-209ENST00000509277 FRAS1Q86XX4 4008 aa5.43□□□□□ -1.54
LIMCH1-209ENST00000509277 LINC00528Q8N1L1 170 aa5.43□□□□□ -1.54
LIMCH1-209ENST00000509277 ADM2Q7Z4H4 148 aa5.42□□□□□ -1.54
LIMCH1-209ENST00000509277 COA5Q86WW8 74 aa5.42□□□□□ -1.54
LIMCH1-209ENST00000509277 DSCR10P59022 87 aa5.42□□□□□ -1.54
LIMCH1-209ENST00000509277 Q8N9P0 234 aaPredicted RBP5.42□□□□□ -1.54
LIMCH1-209ENST00000509277 LIMD2Q9BT23 127 aa5.42□□□□□ -1.54
LIMCH1-209ENST00000509277 IGLV8-61A0A075B6I0 122 aa5.41□□□□□ -1.54
LIMCH1-209ENST00000509277 CIRBP-AS1Q8TBR5 109 aa5.41□□□□□ -1.54
LIMCH1-209ENST00000509277 Q8NBF4 154 aa5.4□□□□□ -1.54
LIMCH1-209ENST00000509277 RETNLBQ9BQ08 111 aa5.4□□□□□ -1.55
LIMCH1-209ENST00000509277 H3BQ85 93 aa5.39□□□□□ -1.55
LIMCH1-209ENST00000509277 TLX1NBP0CAT3 122 aa5.39□□□□□ -1.55
LIMCH1-209ENST00000509277 KRTAP7-1Q8IUC3 87 aa5.39□□□□□ -1.55
LIMCH1-209ENST00000509277 SPINK7P58062 85 aa5.39□□□□□ -1.55
LIMCH1-209ENST00000509277 ALMS1Q8TCU4 4167 aa5.38□□□□□ -1.55
LIMCH1-209ENST00000509277 ATP11AUNQ6ZP68 121 aa5.38□□□□□ -1.55
LIMCH1-209ENST00000509277 KRTAP11-1Q8IUC1 163 aa5.38□□□□□ -1.55
LIMCH1-209ENST00000509277 SPACA4Q8TDM5 124 aa5.38□□□□□ -1.55
LIMCH1-209ENST00000509277 DNAH11Q96DT5 4516 aa5.38□□□□□ -1.55
LIMCH1-209ENST00000509277 C7orf65Q6ZTY9 151 aa5.38□□□□□ -1.55
LIMCH1-209ENST00000509277 REG3GQ6UW15 175 aa5.37□□□□□ -1.55
LIMCH1-209ENST00000509277 RYR3Q15413 4870 aa5.37□□□□□ -1.55
LIMCH1-209ENST00000509277 RYR2Q92736 4967 aa5.37□□□□□ -1.55
LIMCH1-209ENST00000509277 C8orf87E5RJ46 101 aa5.37□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 153.6 ms