RNA–Protein interactions for RNA: ENST00000502717.5

HMGXB3-201, Transcript of HMG-box containing 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene HMGXB3, Length 4,974 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGXB3-201ENST00000502717 Q5VV11 94 aa10.91□□□□□ -0.66
HMGXB3-201ENST00000502717 SPRR1AP35321 89 aa10.9□□□□□ -0.66
HMGXB3-201ENST00000502717 A0A087WTM6 91 aa10.89□□□□□ -0.67
HMGXB3-201ENST00000502717 CNBPP62633 177 aaKnown RBP10.89□□□□□ -0.67
HMGXB3-201ENST00000502717 COX6B2Q6YFQ2 88 aa10.89□□□□□ -0.67
HMGXB3-201ENST00000502717 C9orf163Q8N9P6 203 aa10.88□□□□□ -0.67
HMGXB3-201ENST00000502717 UNC79Q9P2D8 2635 aa10.88□□□□□ -0.67
HMGXB3-201ENST00000502717 LINC01558Q9Y6Z2 57 aa10.88□□□□□ -0.67
HMGXB3-201ENST00000502717 TNRC18O15417 2968 aaPredicted RBP10.86□□□□□ -0.67
HMGXB3-201ENST00000502717 COL6A5A8TX70 2615 aa10.85□□□□□ -0.67
HMGXB3-201ENST00000502717 PRR26Q8N8Z3 221 aa10.83□□□□□ -0.68
HMGXB3-201ENST00000502717 CHD6Q8TD26 2715 aa10.83□□□□□ -0.68
HMGXB3-201ENST00000502717 COL6A3P12111 3177 aa10.83□□□□□ -0.68
HMGXB3-201ENST00000502717 SMR3BP02814 79 aaPredicted RBP10.83□□□□□ -0.68
HMGXB3-201ENST00000502717 ZNF861PO60384 105 aa10.83□□□□□ -0.68
HMGXB3-201ENST00000502717 SSBP3-AS1Q7Z2R9 100 aa10.82□□□□□ -0.68
HMGXB3-201ENST00000502717 FLNCQ14315 2725 aa10.82□□□□□ -0.68
HMGXB3-201ENST00000502717 APLNQ9ULZ1 77 aa10.81□□□□□ -0.68
HMGXB3-201ENST00000502717 MMP24-AS1A0A0U1RRL7 71 aa10.79□□□□□ -0.68
HMGXB3-201ENST00000502717 REV3LO60673 3130 aa10.79□□□□□ -0.68
HMGXB3-201ENST00000502717 FRYLO94915 3013 aa10.79□□□□□ -0.68
HMGXB3-201ENST00000502717 NOTCH1P46531 2555 aa10.78□□□□□ -0.68
HMGXB3-201ENST00000502717 BOD1L1Q8NFC6 3051 aa10.78□□□□□ -0.68
HMGXB3-201ENST00000502717 LINC00304Q8N9R0 145 aa10.77□□□□□ -0.69
HMGXB3-201ENST00000502717 TEX15Q9BXT5 2789 aa10.77□□□□□ -0.69
HMGXB3-201ENST00000502717 TNP2Q05952 138 aa10.77□□□□□ -0.69
HMGXB3-201ENST00000502717 Q96NJ1 140 aa10.76□□□□□ -0.69
HMGXB3-201ENST00000502717 ATMQ13315 3056 aa10.76□□□□□ -0.69
HMGXB3-201ENST00000502717 ADGRG4Q8IZF6 3080 aa10.75□□□□□ -0.69
HMGXB3-201ENST00000502717 ZCCHC13Q8WW36 166 aaKnown RBP10.75□□□□□ -0.69
HMGXB3-201ENST00000502717 DMXL2Q8TDJ6 3036 aa10.74□□□□□ -0.69
HMGXB3-201ENST00000502717 LINC00472Q9H8W2 130 aa10.73□□□□□ -0.69
HMGXB3-201ENST00000502717 KRTAP26-1Q6PEX3 210 aa10.73□□□□□ -0.69
HMGXB3-201ENST00000502717 ANAPC11Q9NYG5 84 aa10.7□□□□□ -0.7
HMGXB3-201ENST00000502717 SPRR1BP22528 89 aa10.69□□□□□ -0.7
HMGXB3-201ENST00000502717 HRES1P13985 223 aa10.69□□□□□ -0.7
HMGXB3-201ENST00000502717 GCN1Q92616 2671 aaKnown RBP10.68□□□□□ -0.7
HMGXB3-201ENST00000502717 SPTBN5Q9NRC6 3674 aaKnown RBP10.68□□□□□ -0.7
HMGXB3-201ENST00000502717 PSORS1C2Q9UIG4 136 aa10.68□□□□□ -0.7
HMGXB3-201ENST00000502717 LINC01554Q52M75 96 aa10.66□□□□□ -0.7
HMGXB3-201ENST00000502717 SPINT4Q6UDR6 99 aa10.64□□□□□ -0.71
HMGXB3-201ENST00000502717 FREM2Q5SZK8 3169 aa10.64□□□□□ -0.71
HMGXB3-201ENST00000502717 SPINK7P58062 85 aa10.64□□□□□ -0.71
HMGXB3-201ENST00000502717 COL12A1Q99715 3063 aa10.64□□□□□ -0.71
HMGXB3-201ENST00000502717 EYSQ5T1H1 3165 aa10.64□□□□□ -0.71
HMGXB3-201ENST00000502717 LCE6AA0A183 80 aa10.63□□□□□ -0.71
HMGXB3-201ENST00000502717 KRTAP4-16G5E9R7 235 aaPredicted RBP10.63□□□□□ -0.71
HMGXB3-201ENST00000502717 KALRNO60229 2985 aa10.63□□□□□ -0.71
HMGXB3-201ENST00000502717 IGLV7-43P04211 117 aa10.62□□□□□ -0.71
HMGXB3-201ENST00000502717 KRTAP29-1A8MX34 341 aaPredicted RBP10.6□□□□□ -0.71
HMGXB3-201ENST00000502717 UBR5O95071 2799 aaPredicted RBP10.58□□□□□ -0.72
HMGXB3-201ENST00000502717 LRBAP50851 2863 aa10.58□□□□□ -0.72
HMGXB3-201ENST00000502717 PRAC1Q96KF2 57 aa10.58□□□□□ -0.72
HMGXB3-201ENST00000502717 SPEGQ15772 3267 aa10.58□□□□□ -0.72
HMGXB3-201ENST00000502717 ITPR1Q14643 2758 aa10.56□□□□□ -0.72
HMGXB3-201ENST00000502717 NBEAL1Q6ZS30 2694 aa10.55□□□□□ -0.72
HMGXB3-201ENST00000502717 DMXL1Q9Y485 3027 aa10.54□□□□□ -0.72
HMGXB3-201ENST00000502717 NBEAL2Q6ZNJ1 2754 aa10.52□□□□□ -0.73
HMGXB3-201ENST00000502717 Q6ZR54 194 aa10.49□□□□□ -0.73
HMGXB3-201ENST00000502717 Q8N1X5 172 aa10.49□□□□□ -0.73
HMGXB3-201ENST00000502717 UTP20O75691 2785 aaKnown RBP10.47□□□□□ -0.73
HMGXB3-201ENST00000502717 TACC2O95359 2948 aa10.46□□□□□ -0.74
HMGXB3-201ENST00000502717 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP10.46□□□□□ -0.74
HMGXB3-201ENST00000502717 ZZEF1O43149 2961 aa10.46□□□□□ -0.74
HMGXB3-201ENST00000502717 CRIPTQ9P021 101 aa10.45□□□□□ -0.74
HMGXB3-201ENST00000502717 C9orf92A6NGG3 77 aa10.43□□□□□ -0.74
HMGXB3-201ENST00000502717 ITPR2Q14571 2701 aa10.43□□□□□ -0.74
HMGXB3-201ENST00000502717 Q5W150 140 aa10.42□□□□□ -0.74
HMGXB3-201ENST00000502717 H3BS24 57 aa10.42□□□□□ -0.74
HMGXB3-201ENST00000502717 ASB16-AS1Q495Z4 193 aa10.42□□□□□ -0.74
HMGXB3-201ENST00000502717 A6NN06 94 aa10.41□□□□□ -0.74
HMGXB3-201ENST00000502717 DMBT1Q9UGM3 2413 aaPredicted RBP10.4□□□□□ -0.74
HMGXB3-201ENST00000502717 CSAG1Q6PB30 78 aa10.39□□□□□ -0.75
HMGXB3-201ENST00000502717 A0A1B0GU33 70 aa10.39□□□□□ -0.75
HMGXB3-201ENST00000502717 LOC400499M0QZD8 3231 aa10.38□□□□□ -0.75
HMGXB3-201ENST00000502717 DMAC1Q96GE9 116 aa10.38□□□□□ -0.75
HMGXB3-201ENST00000502717 APCP25054 2843 aa10.35□□□□□ -0.75
HMGXB3-201ENST00000502717 Q6ZSA8 131 aa10.35□□□□□ -0.75
HMGXB3-201ENST00000502717 FLG2Q5D862 2391 aaPredicted RBP10.34□□□□□ -0.75
HMGXB3-201ENST00000502717 USP34Q70CQ2 3546 aa10.34□□□□□ -0.75
HMGXB3-201ENST00000502717 STAB2Q8WWQ8 2551 aa10.33□□□□□ -0.76
HMGXB3-201ENST00000502717 PLAC8Q9NZF1 115 aa10.33□□□□□ -0.76
HMGXB3-201ENST00000502717 KRTAP21-3Q3LHN1 58 aa10.32□□□□□ -0.76
HMGXB3-201ENST00000502717 ZANQ9Y493 2812 aa10.31□□□□□ -0.76
HMGXB3-201ENST00000502717 LINC00483Q53H64 154 aa10.31□□□□□ -0.76
HMGXB3-201ENST00000502717 KRTAP1-5Q9BYS1 174 aa10.31□□□□□ -0.76
HMGXB3-201ENST00000502717 HRNRQ86YZ3 2850 aaPredicted RBP10.3□□□□□ -0.76
HMGXB3-201ENST00000502717 M0R2T5 61 aa10.3□□□□□ -0.76
HMGXB3-201ENST00000502717 CFAP47Q6ZTR5 3102 aa10.28□□□□□ -0.76
HMGXB3-201ENST00000502717 A8MU10 97 aa10.28□□□□□ -0.76
HMGXB3-201ENST00000502717 HIVEP1P15822 2718 aa10.26□□□□□ -0.77
HMGXB3-201ENST00000502717 SPATA8Q6RVD6 105 aa10.25□□□□□ -0.77
HMGXB3-201ENST00000502717 NSD1Q96L73 2696 aaPredicted RBP10.25□□□□□ -0.77
HMGXB3-201ENST00000502717 KRTAP7-1Q8IUC3 87 aa10.25□□□□□ -0.77
HMGXB3-201ENST00000502717 A0A0D9SG42 100 aa10.22□□□□□ -0.77
HMGXB3-201ENST00000502717 Q5VSD8 79 aa10.22□□□□□ -0.77
HMGXB3-201ENST00000502717 MYO15AQ9UKN7 3530 aa10.19□□□□□ -0.78
HMGXB3-201ENST00000502717 KMT2BQ9UMN6 2715 aaPredicted RBP10.16□□□□□ -0.78
HMGXB3-201ENST00000502717 NIPBLQ6KC79 2804 aaeCLIP10.15□□□□□ -0.78
HMGXB3-201ENST00000502717 SEC61BP60468 96 aaKnown RBP10.14□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 7.1 ms