RNA–Protein interactions for RNA: ENST00000488279.6

PTPN4-211, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 5

Gene PTPN4, Length 662 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-211ENST00000488279 RPL37P61927 97 aaKnown RBP12.1□□□□□ -0.47
PTPN4-211ENST00000488279 Q6JHZ5 121 aa12.1□□□□□ -0.47
PTPN4-211ENST00000488279 MT1HP80294 61 aa12.09□□□□□ -0.47
PTPN4-211ENST00000488279 KRTAP3-3Q9BYR6 98 aa12.09□□□□□ -0.47
PTPN4-211ENST00000488279 KRTAP3-2Q9BYR7 98 aa12.09□□□□□ -0.47
PTPN4-211ENST00000488279 S100A6P06703 90 aa12.08□□□□□ -0.48
PTPN4-211ENST00000488279 OCIAD2Q56VL3 154 aa12.06□□□□□ -0.48
PTPN4-211ENST00000488279 CLEC2BQ92478 149 aa12.06□□□□□ -0.48
PTPN4-211ENST00000488279 HIST1H4GQ99525 98 aa12.06□□□□□ -0.48
PTPN4-211ENST00000488279 BVES-AS1Q5T3Y7 98 aa12.05□□□□□ -0.48
PTPN4-211ENST00000488279 IGFL1Q6UW32 110 aa12.05□□□□□ -0.48
PTPN4-211ENST00000488279 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP12.05□□□□□ -0.48
PTPN4-211ENST00000488279 C12orf57Q99622 126 aa12.05□□□□□ -0.48
PTPN4-211ENST00000488279 TRBV7-7A0A0K0K1E9 115 aa12.04□□□□□ -0.48
PTPN4-211ENST00000488279 SCGB1D1O95968 90 aa12.03□□□□□ -0.48
PTPN4-211ENST00000488279 CFC1BP0CG36 223 aa12.03□□□□□ -0.48
PTPN4-211ENST00000488279 PPDPFLQ8WWR9 84 aa12.02□□□□□ -0.49
PTPN4-211ENST00000488279 SNHG12Q9BXW3 62 aa12.01□□□□□ -0.49
PTPN4-211ENST00000488279 S100A1P23297 94 aa11.99□□□□□ -0.49
PTPN4-211ENST00000488279 COX8AP10176 69 aa11.98□□□□□ -0.49
PTPN4-211ENST00000488279 DLEU1O43261 78 aa11.95□□□□□ -0.5
PTPN4-211ENST00000488279 COX6B2Q6YFQ2 88 aa11.95□□□□□ -0.5
PTPN4-211ENST00000488279 SNCGO76070 127 aa11.93□□□□□ -0.5
PTPN4-211ENST00000488279 FSIP2Q5CZC0 6907 aa11.92□□□□□ -0.5
PTPN4-211ENST00000488279 H3BUT2 72 aa11.92□□□□□ -0.5
PTPN4-211ENST00000488279 CFC1P0CG37 223 aa11.92□□□□□ -0.5
PTPN4-211ENST00000488279 OBSCN-AS1Q96MR7 158 aa11.92□□□□□ -0.5
PTPN4-211ENST00000488279 LST1O00453 97 aa11.91□□□□□ -0.5
PTPN4-211ENST00000488279 RAB37Q96AX2 223 aa11.91□□□□□ -0.5
PTPN4-211ENST00000488279 M0R2T5 61 aa11.9□□□□□ -0.5
PTPN4-211ENST00000488279 ATP11AUNQ6ZP68 121 aa11.89□□□□□ -0.51
PTPN4-211ENST00000488279 C14orf144Q96I85 54 aa11.89□□□□□ -0.51
PTPN4-211ENST00000488279 CRCT1Q9UGL9 99 aa11.89□□□□□ -0.51
PTPN4-211ENST00000488279 H0YGX0 51 aa11.88□□□□□ -0.51
PTPN4-211ENST00000488279 LORP23490 312 aaPredicted RBP11.88□□□□□ -0.51
PTPN4-211ENST00000488279 KRTAP10-6P60371 365 aaPredicted RBP11.88□□□□□ -0.51
PTPN4-211ENST00000488279 Q75L30 129 aa11.87□□□□□ -0.51
PTPN4-211ENST00000488279 HIGD1BQ9P298 99 aa11.86□□□□□ -0.51
PTPN4-211ENST00000488279 A0A0B4J2C4 111 aa11.84□□□□□ -0.51
PTPN4-211ENST00000488279 Q6Q795 121 aa11.84□□□□□ -0.51
PTPN4-211ENST00000488279 SS18L2Q9UHA2 77 aa11.84□□□□□ -0.51
PTPN4-211ENST00000488279 PAM16Q9Y3D7 125 aa11.83□□□□□ -0.52
PTPN4-211ENST00000488279 NDUFV3P56181 108 aaKnown RBP11.82□□□□□ -0.52
PTPN4-211ENST00000488279 SPATA45Q537H7 98 aa11.82□□□□□ -0.52
PTPN4-211ENST00000488279 TEN1Q86WV5 123 aa11.82□□□□□ -0.52
PTPN4-211ENST00000488279 FAM218AQ96MZ4 157 aa11.82□□□□□ -0.52
PTPN4-211ENST00000488279 FLGP20930 4061 aaPredicted RBP11.81□□□□□ -0.52
PTPN4-211ENST00000488279 Q96NJ1 140 aa11.81□□□□□ -0.52
PTPN4-211ENST00000488279 GHRHP01286 108 aa11.79□□□□□ -0.52
PTPN4-211ENST00000488279 C2orf91Q6ZV80 131 aa11.77□□□□□ -0.53
PTPN4-211ENST00000488279 VAMP8Q9BV40 100 aa11.77□□□□□ -0.53
PTPN4-211ENST00000488279 H3BMG7 143 aa11.76□□□□□ -0.53
PTPN4-211ENST00000488279 CEND1Q8N111 149 aa11.76□□□□□ -0.53
PTPN4-211ENST00000488279 A0A1B0GX51 115 aa11.75□□□□□ -0.53
PTPN4-211ENST00000488279 PRO1854Q9UHT4 67 aa11.75□□□□□ -0.53
PTPN4-211ENST00000488279 A0A087WSZ3 146 aa11.74□□□□□ -0.53
PTPN4-211ENST00000488279 FABP2P12104 132 aa11.74□□□□□ -0.53
PTPN4-211ENST00000488279 TMEM238LA0A1B0GVL6 79 aa11.73□□□□□ -0.53
PTPN4-211ENST00000488279 A6NJY4 79 aa11.73□□□□□ -0.53
PTPN4-211ENST00000488279 C20orf166-AS1Q96NR2 134 aa11.71□□□□□ -0.53
PTPN4-211ENST00000488279 A8MUU9 505 aa11.68□□□□□ -0.54
PTPN4-211ENST00000488279 TRIAP1O43715 76 aa11.66□□□□□ -0.54
PTPN4-211ENST00000488279 FXYD2P54710 66 aa11.66□□□□□ -0.54
PTPN4-211ENST00000488279 A0A1W2PNM2 257 aa11.64□□□□□ -0.55
PTPN4-211ENST00000488279 DSCR10P59022 87 aa11.62□□□□□ -0.55
PTPN4-211ENST00000488279 DNAL4O96015 105 aa11.61□□□□□ -0.55
PTPN4-211ENST00000488279 ANKRD29Q8N6D5 301 aa11.61□□□□□ -0.55
PTPN4-211ENST00000488279 TRBV20-1A0A075B6N2 111 aa11.6□□□□□ -0.55
PTPN4-211ENST00000488279 H3BQ85 93 aa11.6□□□□□ -0.55
PTPN4-211ENST00000488279 SIGMAR1Q99720 223 aa11.6□□□□□ -0.55
PTPN4-211ENST00000488279 ORMDL1Q9P0S3 153 aa11.59□□□□□ -0.55
PTPN4-211ENST00000488279 TRBV7-4A0A0J9YYF1 115 aa11.58□□□□□ -0.56
PTPN4-211ENST00000488279 PSMB2P49721 201 aa11.58□□□□□ -0.56
PTPN4-211ENST00000488279 LINC00313P59037 77 aa11.57□□□□□ -0.56
PTPN4-211ENST00000488279 TMEM256-PLSCR3K7ERE1 68 aa11.55□□□□□ -0.56
PTPN4-211ENST00000488279 IGKV4-1P06312 121 aa11.55□□□□□ -0.56
PTPN4-211ENST00000488279 A0A1B0GV72 72 aa11.54□□□□□ -0.56
PTPN4-211ENST00000488279 COX6CP09669 75 aa11.54□□□□□ -0.56
PTPN4-211ENST00000488279 HSD52Q0P140 79 aa11.54□□□□□ -0.56
PTPN4-211ENST00000488279 K7ERJ3 54 aa11.52□□□□□ -0.57
PTPN4-211ENST00000488279 PYY3Q5JQD4 70 aa11.49□□□□□ -0.57
PTPN4-211ENST00000488279 CCKP06307 115 aa11.48□□□□□ -0.57
PTPN4-211ENST00000488279 TRACP01848 142 aa11.47□□□□□ -0.57
PTPN4-211ENST00000488279 DEFB116Q30KQ4 102 aa11.47□□□□□ -0.57
PTPN4-211ENST00000488279 LINC00472Q9H8W2 130 aa11.47□□□□□ -0.57
PTPN4-211ENST00000488279 KRTAP16-1A8MUX0 517 aa11.46□□□□□ -0.57
PTPN4-211ENST00000488279 UBE2V1Q13404 147 aa11.45□□□□□ -0.58
PTPN4-211ENST00000488279 NOTCH2NLQ7Z3S9 236 aa11.44□□□□□ -0.58
PTPN4-211ENST00000488279 KRTAP9-8Q9BYQ0 159 aa11.42□□□□□ -0.58
PTPN4-211ENST00000488279 IGHV6-1A0A0B4J1U7 121 aa11.41□□□□□ -0.58
PTPN4-211ENST00000488279 UQCR10Q9UDW1 63 aa11.4□□□□□ -0.58
PTPN4-211ENST00000488279 FAM236DA0A1B0GTK5 79 aa11.39□□□□□ -0.59
PTPN4-211ENST00000488279 SCGB1C2P0DMR2 95 aa11.39□□□□□ -0.59
PTPN4-211ENST00000488279 FAM236CP0DP71 79 aa11.39□□□□□ -0.59
PTPN4-211ENST00000488279 RBM3P98179 157 aaKnown RBP11.37□□□□□ -0.59
PTPN4-211ENST00000488279 VPS25Q9BRG1 176 aa11.37□□□□□ -0.59
PTPN4-211ENST00000488279 RBM12B-AS1Q9P1G2 102 aa11.36□□□□□ -0.59
PTPN4-211ENST00000488279 DSCR8Q96T75 97 aa11.35□□□□□ -0.59
PTPN4-211ENST00000488279 C8orf87E5RJ46 101 aa11.32□□□□□ -0.6
PTPN4-211ENST00000488279 A0A1B0GVX0 72 aa11.31□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 60.5 ms