RNA–Protein interactions for RNA: ENST00000471702.2

NPHP3-ACAD11-201, Transcript of NPHP3-ACAD11 readthrough (NMD candidate), humanhuman

TSL 2 BASIC

Gene NPHP3-ACAD11, Length 7,784 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP3-ACAD11-201ENST00000471702 WDFY4Q6ZS81 3184 aa8.6□□□□□ -1.03
NPHP3-ACAD11-201ENST00000471702 S4R3F8 94 aa8.59□□□□□ -1.03
NPHP3-ACAD11-201ENST00000471702 MGAQ8IWI9 3026 aa8.59□□□□□ -1.03
NPHP3-ACAD11-201ENST00000471702 CASC10Q5T4H9 136 aa8.59□□□□□ -1.03
NPHP3-ACAD11-201ENST00000471702 EIF4EBP3O60516 100 aaPredicted RBP8.57□□□□□ -1.04
NPHP3-ACAD11-201ENST00000471702 RANBP2P49792 3224 aaKnown RBP8.57□□□□□ -1.04
NPHP3-ACAD11-201ENST00000471702 A0A1B0GU33 70 aa8.55□□□□□ -1.04
NPHP3-ACAD11-201ENST00000471702 KRTAP10-3P60369 221 aa8.55□□□□□ -1.04
NPHP3-ACAD11-201ENST00000471702 CSAG1Q6PB30 78 aa8.55□□□□□ -1.04
NPHP3-ACAD11-201ENST00000471702 C10orf142B7Z368 130 aa8.52□□□□□ -1.05
NPHP3-ACAD11-201ENST00000471702 TNP2Q05952 138 aa8.52□□□□□ -1.05
NPHP3-ACAD11-201ENST00000471702 LINC00612Q8N6U2 182 aa8.51□□□□□ -1.05
NPHP3-ACAD11-201ENST00000471702 TRANK1O15050 2925 aa8.51□□□□□ -1.05
NPHP3-ACAD11-201ENST00000471702 SPRR4Q96PI1 79 aa8.5□□□□□ -1.05
NPHP3-ACAD11-201ENST00000471702 C19orf73Q9NVV2 129 aa8.5□□□□□ -1.05
NPHP3-ACAD11-201ENST00000471702 H7BZZ5 65 aa8.5□□□□□ -1.05
NPHP3-ACAD11-201ENST00000471702 CRYBG3Q68DQ2 2970 aa8.49□□□□□ -1.05
NPHP3-ACAD11-201ENST00000471702 PRR34Q9NV39 138 aa8.49□□□□□ -1.05
NPHP3-ACAD11-201ENST00000471702 H3BS24 57 aa8.47□□□□□ -1.05
NPHP3-ACAD11-201ENST00000471702 GCN1Q92616 2671 aaKnown RBP8.45□□□□□ -1.06
NPHP3-ACAD11-201ENST00000471702 CDH23Q9H251 3354 aa8.44□□□□□ -1.06
NPHP3-ACAD11-201ENST00000471702 SEC61BP60468 96 aaKnown RBP8.44□□□□□ -1.06
NPHP3-ACAD11-201ENST00000471702 GIG44P09565 113 aaPredicted RBP8.44□□□□□ -1.06
NPHP3-ACAD11-201ENST00000471702 DMXL2Q8TDJ6 3036 aa8.43□□□□□ -1.06
NPHP3-ACAD11-201ENST00000471702 HTTP42858 3142 aa8.43□□□□□ -1.06
NPHP3-ACAD11-201ENST00000471702 KLKP1Q107X0 134 aa8.43□□□□□ -1.06
NPHP3-ACAD11-201ENST00000471702 DMAC1Q96GE9 116 aa8.43□□□□□ -1.06
NPHP3-ACAD11-201ENST00000471702 VCANP13611 3396 aa8.4□□□□□ -1.06
NPHP3-ACAD11-201ENST00000471702 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP8.39□□□□□ -1.07
NPHP3-ACAD11-201ENST00000471702 A0A1W2PNM2 257 aa8.37□□□□□ -1.07
NPHP3-ACAD11-201ENST00000471702 KMT2BQ9UMN6 2715 aaPredicted RBP8.37□□□□□ -1.07
NPHP3-ACAD11-201ENST00000471702 ZNF292O60281 2723 aa8.37□□□□□ -1.07
NPHP3-ACAD11-201ENST00000471702 CHD7Q9P2D1 2997 aa8.36□□□□□ -1.07
NPHP3-ACAD11-201ENST00000471702 NBEAL2Q6ZNJ1 2754 aa8.35□□□□□ -1.07
NPHP3-ACAD11-201ENST00000471702 CNBPP62633 177 aaKnown RBP8.34□□□□□ -1.07
NPHP3-ACAD11-201ENST00000471702 DNAH14Q0VDD8 3507 aa8.33□□□□□ -1.08
NPHP3-ACAD11-201ENST00000471702 M0QZ58 72 aa8.33□□□□□ -1.08
NPHP3-ACAD11-201ENST00000471702 CFAP47Q6ZTR5 3102 aa8.32□□□□□ -1.08
NPHP3-ACAD11-201ENST00000471702 DSPP15924 2871 aaKnown RBP8.31□□□□□ -1.08
NPHP3-ACAD11-201ENST00000471702 NSD1Q96L73 2696 aaPredicted RBP8.31□□□□□ -1.08
NPHP3-ACAD11-201ENST00000471702 SPEGQ15772 3267 aa8.3□□□□□ -1.08
NPHP3-ACAD11-201ENST00000471702 C20orf166-AS1Q96NR2 134 aa8.3□□□□□ -1.08
NPHP3-ACAD11-201ENST00000471702 ASH1LQ9NR48 2969 aaKnown RBP8.3□□□□□ -1.08
NPHP3-ACAD11-201ENST00000471702 Q8N9P0 234 aaPredicted RBP8.28□□□□□ -1.08
NPHP3-ACAD11-201ENST00000471702 ITPR2Q14571 2701 aa8.28□□□□□ -1.08
NPHP3-ACAD11-201ENST00000471702 SPANXA2-OT1Q8N9U9 137 aa8.27□□□□□ -1.08
NPHP3-ACAD11-201ENST00000471702 LAMA1P25391 3075 aa8.27□□□□□ -1.09
NPHP3-ACAD11-201ENST00000471702 KALRNO60229 2985 aa8.27□□□□□ -1.09
NPHP3-ACAD11-201ENST00000471702 ROMO1P60602 79 aa8.27□□□□□ -1.09
NPHP3-ACAD11-201ENST00000471702 IGSF10Q6WRI0 2623 aa8.25□□□□□ -1.09
NPHP3-ACAD11-201ENST00000471702 COL6A3P12111 3177 aa8.25□□□□□ -1.09
NPHP3-ACAD11-201ENST00000471702 FAM229BQ4G0N7 80 aa8.24□□□□□ -1.09
NPHP3-ACAD11-201ENST00000471702 A0A096LNT2 108 aa8.24□□□□□ -1.09
NPHP3-ACAD11-201ENST00000471702 APCP25054 2843 aa8.22□□□□□ -1.09
NPHP3-ACAD11-201ENST00000471702 COL12A1Q99715 3063 aa8.22□□□□□ -1.09
NPHP3-ACAD11-201ENST00000471702 UTP20O75691 2785 aaKnown RBP8.21□□□□□ -1.1
NPHP3-ACAD11-201ENST00000471702 Q5XG85 94 aa8.2□□□□□ -1.1
NPHP3-ACAD11-201ENST00000471702 FRYLO94915 3013 aa8.19□□□□□ -1.1
NPHP3-ACAD11-201ENST00000471702 PRAC1Q96KF2 57 aa8.19□□□□□ -1.1
NPHP3-ACAD11-201ENST00000471702 BOD1L1Q8NFC6 3051 aa8.18□□□□□ -1.1
NPHP3-ACAD11-201ENST00000471702 ZCCHC13Q8WW36 166 aaKnown RBP8.17□□□□□ -1.1
NPHP3-ACAD11-201ENST00000471702 KRTAP1-3Q8IUG1 177 aa8.17□□□□□ -1.1
NPHP3-ACAD11-201ENST00000471702 CYSTM1Q9H1C7 97 aa8.17□□□□□ -1.1
NPHP3-ACAD11-201ENST00000471702 UBR5O95071 2799 aaPredicted RBP8.16□□□□□ -1.1
NPHP3-ACAD11-201ENST00000471702 ADM2Q7Z4H4 148 aa8.14□□□□□ -1.11
NPHP3-ACAD11-201ENST00000471702 KLK9Q2XQG4 91 aa8.14□□□□□ -1.11
NPHP3-ACAD11-201ENST00000471702 SZT2Q5T011 3432 aa8.13□□□□□ -1.11
NPHP3-ACAD11-201ENST00000471702 OCR1Q9BZK8 76 aa8.12□□□□□ -1.11
NPHP3-ACAD11-201ENST00000471702 RPL37P61927 97 aaKnown RBP8.12□□□□□ -1.11
NPHP3-ACAD11-201ENST00000471702 KRTAP1-1Q07627 177 aa8.11□□□□□ -1.11
NPHP3-ACAD11-201ENST00000471702 FP248Q71RG6 208 aaPredicted RBP8.11□□□□□ -1.11
NPHP3-ACAD11-201ENST00000471702 P0C880 135 aa8.09□□□□□ -1.11
NPHP3-ACAD11-201ENST00000471702 KRTAP16-1A8MUX0 517 aa8.09□□□□□ -1.11
NPHP3-ACAD11-201ENST00000471702 TACC2O95359 2948 aa8.08□□□□□ -1.12
NPHP3-ACAD11-201ENST00000471702 OXTP01178 125 aa8.08□□□□□ -1.12
NPHP3-ACAD11-201ENST00000471702 FLNCQ14315 2725 aa8.07□□□□□ -1.12
NPHP3-ACAD11-201ENST00000471702 ZZEF1O43149 2961 aa8.07□□□□□ -1.12
NPHP3-ACAD11-201ENST00000471702 SPATA8Q6RVD6 105 aa8.05□□□□□ -1.12
NPHP3-ACAD11-201ENST00000471702 ATMQ13315 3056 aa8.05□□□□□ -1.12
NPHP3-ACAD11-201ENST00000471702 Q8NDZ9 215 aa8.05□□□□□ -1.12
NPHP3-ACAD11-201ENST00000471702 Q5W150 140 aa8.05□□□□□ -1.12
NPHP3-ACAD11-201ENST00000471702 LINC01558Q9Y6Z2 57 aa8.05□□□□□ -1.12
NPHP3-ACAD11-201ENST00000471702 PLAC8Q9NZF1 115 aa8.03□□□□□ -1.12
NPHP3-ACAD11-201ENST00000471702 Q75L30 129 aa8.03□□□□□ -1.12
NPHP3-ACAD11-201ENST00000471702 LRBAP50851 2863 aa8.01□□□□□ -1.13
NPHP3-ACAD11-201ENST00000471702 MMP24-AS1A0A0U1RRL7 71 aa8□□□□□ -1.13
NPHP3-ACAD11-201ENST00000471702 ADGRG4Q8IZF6 3080 aa7.98□□□□□ -1.13
NPHP3-ACAD11-201ENST00000471702 KRTAP10-2P60368 255 aa7.98□□□□□ -1.13
NPHP3-ACAD11-201ENST00000471702 KRTAP10-1P60331 282 aa7.97□□□□□ -1.13
NPHP3-ACAD11-201ENST00000471702 Q5VV11 94 aa7.96□□□□□ -1.13
NPHP3-ACAD11-201ENST00000471702 HIVEP1P15822 2718 aa7.95□□□□□ -1.14
NPHP3-ACAD11-201ENST00000471702 CHD9Q3L8U1 2897 aa7.94□□□□□ -1.14
NPHP3-ACAD11-201ENST00000471702 ITPR1Q14643 2758 aa7.94□□□□□ -1.14
NPHP3-ACAD11-201ENST00000471702 KRTAP1-5Q9BYS1 174 aa7.91□□□□□ -1.14
NPHP3-ACAD11-201ENST00000471702 EYSQ5T1H1 3165 aa7.91□□□□□ -1.14
NPHP3-ACAD11-201ENST00000471702 CELSR2Q9HCU4 2923 aa7.91□□□□□ -1.14
NPHP3-ACAD11-201ENST00000471702 TNRC18O15417 2968 aaPredicted RBP7.88□□□□□ -1.15
NPHP3-ACAD11-201ENST00000471702 LCE6AA0A183 80 aa7.88□□□□□ -1.15
NPHP3-ACAD11-201ENST00000471702 NBEAQ8NFP9 2946 aa7.88□□□□□ -1.15
NPHP3-ACAD11-201ENST00000471702 C10orf95Q9H7T3 257 aa7.88□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 59.6 ms