RNA–Protein interactions for RNA: ENST00000460569.1

UPF2-204, Transcript of UPF2, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF2, Length 640 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF2-204ENST00000460569 OCIAD2Q56VL3 154 aa6.02□□□□□ -1.45
UPF2-204ENST00000460569 Q8N377 158 aa6.02□□□□□ -1.45
UPF2-204ENST00000460569 C3orf22Q8N5N4 141 aa6.02□□□□□ -1.45
UPF2-204ENST00000460569 J3QL48 77 aa6.01□□□□□ -1.45
UPF2-204ENST00000460569 FABP2P12104 132 aa6.01□□□□□ -1.45
UPF2-204ENST00000460569 C9orf153Q5TBE3 101 aa6.01□□□□□ -1.45
UPF2-204ENST00000460569 TYMSOSQ8TAI1 123 aa6.01□□□□□ -1.45
UPF2-204ENST00000460569 LAMTOR3Q9UHA4 124 aa6.01□□□□□ -1.45
UPF2-204ENST00000460569 MYCBP2O75592 4640 aa6.01□□□□□ -1.45
UPF2-204ENST00000460569 LRP1Q07954 4544 aaKnown RBP6□□□□□ -1.45
UPF2-204ENST00000460569 TRBV20-1A0A075B6N2 111 aa6□□□□□ -1.45
UPF2-204ENST00000460569 MOBPQ13875 183 aa6□□□□□ -1.45
UPF2-204ENST00000460569 PPDPFLQ8WWR9 84 aa6□□□□□ -1.45
UPF2-204ENST00000460569 ORMDL1Q9P0S3 153 aa6□□□□□ -1.45
UPF2-204ENST00000460569 F8WEM9 126 aa5.99□□□□□ -1.45
UPF2-204ENST00000460569 GHRHP01286 108 aa5.99□□□□□ -1.45
UPF2-204ENST00000460569 MT1HL1P0DM35 61 aa5.99□□□□□ -1.45
UPF2-204ENST00000460569 KRTAP10-8P60410 259 aa5.99□□□□□ -1.45
UPF2-204ENST00000460569 SMIM29Q86T20 159 aa5.99□□□□□ -1.45
UPF2-204ENST00000460569 Q8NBF4 154 aa5.98□□□□□ -1.45
UPF2-204ENST00000460569 FAT3Q8TDW7 4589 aa5.98□□□□□ -1.45
UPF2-204ENST00000460569 H3BQ85 93 aa5.97□□□□□ -1.45
UPF2-204ENST00000460569 SPCS1Q9Y6A9 102 aa5.97□□□□□ -1.45
UPF2-204ENST00000460569 DMBT1Q9UGM3 2413 aaPredicted RBP5.96□□□□□ -1.45
UPF2-204ENST00000460569 C9JAW5 83 aa5.95□□□□□ -1.46
UPF2-204ENST00000460569 TMEM256-PLSCR3K7ERE1 68 aa5.95□□□□□ -1.46
UPF2-204ENST00000460569 SSBP3-AS1Q7Z2R9 100 aa5.95□□□□□ -1.46
UPF2-204ENST00000460569 H3BMG7 143 aa5.94□□□□□ -1.46
UPF2-204ENST00000460569 BAALC-AS2P0C853 105 aa5.94□□□□□ -1.46
UPF2-204ENST00000460569 NDUFV3P56181 108 aaKnown RBP5.94□□□□□ -1.46
UPF2-204ENST00000460569 LINC00304Q8N9R0 145 aa5.94□□□□□ -1.46
UPF2-204ENST00000460569 A0A1B0GV72 72 aa5.93□□□□□ -1.46
UPF2-204ENST00000460569 K7EP34 96 aa5.93□□□□□ -1.46
UPF2-204ENST00000460569 MTURNQ8N3F0 131 aa5.93□□□□□ -1.46
UPF2-204ENST00000460569 UBE2V1Q13404 147 aa5.92□□□□□ -1.46
UPF2-204ENST00000460569 IGLV8-61A0A075B6I0 122 aa5.91□□□□□ -1.46
UPF2-204ENST00000460569 A0A0G2JQZ4 141 aa5.91□□□□□ -1.46
UPF2-204ENST00000460569 Q6JHZ5 121 aa5.91□□□□□ -1.46
UPF2-204ENST00000460569 GTF2H5Q6ZYL4 71 aa5.91□□□□□ -1.46
UPF2-204ENST00000460569 ANKRD29Q8N6D5 301 aa5.91□□□□□ -1.46
UPF2-204ENST00000460569 H3BT86 120 aa5.9□□□□□ -1.46
UPF2-204ENST00000460569 SPAG11AQ6PDA7 123 aa5.9□□□□□ -1.46
UPF2-204ENST00000460569 IGFL1Q6UW32 110 aa5.9□□□□□ -1.46
UPF2-204ENST00000460569 PCLOQ9Y6V0 5065 aa5.9□□□□□ -1.47
UPF2-204ENST00000460569 HRCT1Q6UXD1 115 aa5.89□□□□□ -1.47
UPF2-204ENST00000460569 TNXBP22105 4242 aa5.88□□□□□ -1.47
UPF2-204ENST00000460569 SPINK1P00995 79 aa5.87□□□□□ -1.47
UPF2-204ENST00000460569 RBM3P98179 157 aaKnown RBP5.86□□□□□ -1.47
UPF2-204ENST00000460569 CD164Q04900 197 aa5.86□□□□□ -1.47
UPF2-204ENST00000460569 A0A1B0GV90 55 aa5.85□□□□□ -1.47
UPF2-204ENST00000460569 JMJD7-PLA2G4BH0Y9G9 81 aa5.85□□□□□ -1.47
UPF2-204ENST00000460569 SMCPP49901 116 aaPredicted RBP5.85□□□□□ -1.47
UPF2-204ENST00000460569 DSCR8Q96T75 97 aa5.85□□□□□ -1.47
UPF2-204ENST00000460569 PRO0461Q9UI25 63 aa5.85□□□□□ -1.47
UPF2-204ENST00000460569 RPS29P62273 56 aaKnown RBP5.84□□□□□ -1.47
UPF2-204ENST00000460569 LIMD2Q9BT23 127 aa5.84□□□□□ -1.47
UPF2-204ENST00000460569 TRBV7-4A0A0J9YYF1 115 aa5.83□□□□□ -1.48
UPF2-204ENST00000460569 C14orf132Q9NPU4 83 aa5.83□□□□□ -1.48
UPF2-204ENST00000460569 TRBV7-7A0A0K0K1E9 115 aa5.82□□□□□ -1.48
UPF2-204ENST00000460569 A0A1W2PNM2 257 aa5.82□□□□□ -1.48
UPF2-204ENST00000460569 CCKP06307 115 aa5.82□□□□□ -1.48
UPF2-204ENST00000460569 TEN1Q86WV5 123 aa5.82□□□□□ -1.48
UPF2-204ENST00000460569 VPS25Q9BRG1 176 aa5.82□□□□□ -1.48
UPF2-204ENST00000460569 F8W1H4 67 aa5.81□□□□□ -1.48
UPF2-204ENST00000460569 Q6Q795 121 aa5.81□□□□□ -1.48
UPF2-204ENST00000460569 OBSCN-AS1Q96MR7 158 aa5.81□□□□□ -1.48
UPF2-204ENST00000460569 RETNLBQ9BQ08 111 aa5.81□□□□□ -1.48
UPF2-204ENST00000460569 A0A087WSZ3 146 aa5.79□□□□□ -1.48
UPF2-204ENST00000460569 LOC110117498A0A087WWA1 95 aa5.79□□□□□ -1.48
UPF2-204ENST00000460569 PDE6GP18545 87 aa5.79□□□□□ -1.48
UPF2-204ENST00000460569 Q6ZQT0 140 aa5.79□□□□□ -1.48
UPF2-204ENST00000460569 Q5XG85 94 aa5.78□□□□□ -1.48
UPF2-204ENST00000460569 SS18L2Q9UHA2 77 aa5.78□□□□□ -1.48
UPF2-204ENST00000460569 PRR4Q16378 134 aa5.77□□□□□ -1.49
UPF2-204ENST00000460569 C21orf62-AS1Q17RA5 79 aa5.76□□□□□ -1.49
UPF2-204ENST00000460569 ETDBQ3ZM63 59 aa5.76□□□□□ -1.49
UPF2-204ENST00000460569 ASB16-AS1Q495Z4 193 aa5.74□□□□□ -1.49
UPF2-204ENST00000460569 C1orf195Q5TG92 126 aa5.74□□□□□ -1.49
UPF2-204ENST00000460569 FP248Q71RG6 208 aaPredicted RBP5.74□□□□□ -1.49
UPF2-204ENST00000460569 IGLV7-46A0A075B6I9 117 aa5.72□□□□□ -1.49
UPF2-204ENST00000460569 A0A1B0GW54 56 aa5.72□□□□□ -1.49
UPF2-204ENST00000460569 HERC1Q15751 4861 aa5.71□□□□□ -1.5
UPF2-204ENST00000460569 Q96NJ1 140 aa5.69□□□□□ -1.5
UPF2-204ENST00000460569 SIGMAR1Q99720 223 aa5.68□□□□□ -1.5
UPF2-204ENST00000460569 DEFB116Q30KQ4 102 aa5.67□□□□□ -1.5
UPF2-204ENST00000460569 LINC00472Q9H8W2 130 aa5.67□□□□□ -1.5
UPF2-204ENST00000460569 IGKV4-1P06312 121 aa5.66□□□□□ -1.5
UPF2-204ENST00000460569 NREPQ16612 68 aa5.66□□□□□ -1.5
UPF2-204ENST00000460569 TPRXLQ17RH7 258 aa5.66□□□□□ -1.5
UPF2-204ENST00000460569 KRTAP13-3Q3SY46 172 aa5.64□□□□□ -1.51
UPF2-204ENST00000460569 C9orf92A6NGG3 77 aa5.63□□□□□ -1.51
UPF2-204ENST00000460569 J3KT08 172 aa5.63□□□□□ -1.51
UPF2-204ENST00000460569 Q6ZVQ6 151 aa5.63□□□□□ -1.51
UPF2-204ENST00000460569 UBL5Q9BZL1 73 aa5.63□□□□□ -1.51
UPF2-204ENST00000460569 LINC00846Q9NV44 126 aa5.63□□□□□ -1.51
UPF2-204ENST00000460569 CDIP1Q9H305 208 aa5.62□□□□□ -1.51
UPF2-204ENST00000460569 FAM240AA0A1B0GVK7 77 aa5.6□□□□□ -1.51
UPF2-204ENST00000460569 ACYP1P07311 99 aa5.6□□□□□ -1.51
UPF2-204ENST00000460569 HMCN2Q8NDA2 5059 aa5.6□□□□□ -1.51
UPF2-204ENST00000460569 IGHV6-1A0A0B4J1U7 121 aa5.59□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 52.6 ms