RNA–Protein interactions for RNA: ENST00000425244.6

CUX1-205, Transcript of cut like homeobox 1, humanhuman

TSL 2 BASIC

Gene CUX1, Length 2,776 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-205ENST00000425244 IGKV2-24A0A0C4DH68 120 aa6.82□□□□□ -1.32
CUX1-205ENST00000425244 LY6G6CO95867 125 aa6.82□□□□□ -1.32
CUX1-205ENST00000425244 KRTAP4-16G5E9R7 235 aaPredicted RBP6.81□□□□□ -1.32
CUX1-205ENST00000425244 NDUFC1O43677 76 aa6.81□□□□□ -1.32
CUX1-205ENST00000425244 ERC2-IT1O76042 136 aa6.81□□□□□ -1.32
CUX1-205ENST00000425244 IGLV5-37A0A075B6J1 123 aa6.81□□□□□ -1.32
CUX1-205ENST00000425244 DNAH2Q9P225 4427 aa6.81□□□□□ -1.32
CUX1-205ENST00000425244 BPY2O14599 106 aa6.8□□□□□ -1.32
CUX1-205ENST00000425244 NBDYA0A0U1RRE5 68 aa6.8□□□□□ -1.32
CUX1-205ENST00000425244 SPRR1AP35321 89 aa6.8□□□□□ -1.32
CUX1-205ENST00000425244 FUSP35637 526 aaKnown RBP eCLIP6.8□□□□□ -1.325e-7■■■■□ 23.7
CUX1-205ENST00000425244 IGLV5-48A0A075B6I7 105 aa6.79□□□□□ -1.32
CUX1-205ENST00000425244 C1orf137Q5JT78 98 aa6.79□□□□□ -1.32
CUX1-205ENST00000425244 IGLV2-33A0A075B6J2 118 aaPredicted RBP6.79□□□□□ -1.32
CUX1-205ENST00000425244 REG3GQ6UW15 175 aa6.79□□□□□ -1.32
CUX1-205ENST00000425244 HYDINQ4G0P3 5121 aa6.78□□□□□ -1.32
CUX1-205ENST00000425244 A0A096LNI7 61 aa6.78□□□□□ -1.32
CUX1-205ENST00000425244 A0A1W2PNM2 257 aa6.78□□□□□ -1.32
CUX1-205ENST00000425244 IGKV4-1P06312 121 aa6.77□□□□□ -1.33
CUX1-205ENST00000425244 PRLHP81277 87 aa6.76□□□□□ -1.33
CUX1-205ENST00000425244 H3BS24 57 aa6.75□□□□□ -1.33
CUX1-205ENST00000425244 A0A0G2JQZ4 141 aa6.75□□□□□ -1.33
CUX1-205ENST00000425244 A0A1W2PNN7 141 aa6.75□□□□□ -1.33
CUX1-205ENST00000425244 TNP2Q05952 138 aa6.74□□□□□ -1.33
CUX1-205ENST00000425244 Q8NBF4 154 aa6.74□□□□□ -1.33
CUX1-205ENST00000425244 HIGD2AQ9BW72 106 aa6.74□□□□□ -1.33
CUX1-205ENST00000425244 CHTF8P0CG12 524 aa6.74□□□□□ -1.33
CUX1-205ENST00000425244 C16orf90A8MZG2 172 aa6.73□□□□□ -1.33
CUX1-205ENST00000425244 LINC00476Q8WZB0 136 aa6.72□□□□□ -1.33
CUX1-205ENST00000425244 RBM12B-AS1Q9P1G2 102 aa6.71□□□□□ -1.33
CUX1-205ENST00000425244 CNBPP62633 177 aaKnown RBP6.71□□□□□ -1.34
CUX1-205ENST00000425244 SMIM29Q86T20 159 aa6.71□□□□□ -1.34
CUX1-205ENST00000425244 PHF5AQ7RTV0 110 aaKnown RBP6.7□□□□□ -1.34
CUX1-205ENST00000425244 TMEM254Q8TBM7 123 aa6.7□□□□□ -1.34
CUX1-205ENST00000425244 Q6ZRN7 208 aaPredicted RBP6.69□□□□□ -1.34
CUX1-205ENST00000425244 SRRM2Q9UQ35 2752 aaKnown RBP6.69□□□□□ -1.34
CUX1-205ENST00000425244 SPRR4Q96PI1 79 aa6.68□□□□□ -1.34
CUX1-205ENST00000425244 FAM30AQ9NZY2 134 aa6.68□□□□□ -1.34
CUX1-205ENST00000425244 FRAS1Q86XX4 4008 aa6.68□□□□□ -1.34
CUX1-205ENST00000425244 A0A1B0GW54 56 aa6.68□□□□□ -1.34
CUX1-205ENST00000425244 DEFB116Q30KQ4 102 aa6.68□□□□□ -1.34
CUX1-205ENST00000425244 C1orf134Q5TEV5 83 aa6.68□□□□□ -1.34
CUX1-205ENST00000425244 IGFL1Q6UW32 110 aa6.68□□□□□ -1.34
CUX1-205ENST00000425244 Q6ZR54 194 aa6.68□□□□□ -1.34
CUX1-205ENST00000425244 KRTAP11-1Q8IUC1 163 aa6.68□□□□□ -1.34
CUX1-205ENST00000425244 OCR1Q9BZK8 76 aa6.68□□□□□ -1.34
CUX1-205ENST00000425244 LRCOL1A6NCL2 159 aa6.67□□□□□ -1.34
CUX1-205ENST00000425244 Q1T7F1 81 aa6.67□□□□□ -1.34
CUX1-205ENST00000425244 C14orf177Q52M58 125 aa6.67□□□□□ -1.34
CUX1-205ENST00000425244 SACSQ9NZJ4 4579 aa6.67□□□□□ -1.34
CUX1-205ENST00000425244 HECTD4Q9Y4D8 3996 aa6.67□□□□□ -1.34
CUX1-205ENST00000425244 K7EQZ3 153 aa6.67□□□□□ -1.34
CUX1-205ENST00000425244 UBE2AP49459 152 aa6.67□□□□□ -1.34
CUX1-205ENST00000425244 DSCR10P59022 87 aa6.66□□□□□ -1.34
CUX1-205ENST00000425244 KTN1-AS1Q86SY8 53 aa6.66□□□□□ -1.34
CUX1-205ENST00000425244 KMT2CQ8NEZ4 4911 aaKnown RBP6.65□□□□□ -1.35
CUX1-205ENST00000425244 A0A087WSZ3 146 aa6.65□□□□□ -1.35
CUX1-205ENST00000425244 A0A087WTM6 91 aa6.64□□□□□ -1.35
CUX1-205ENST00000425244 ALMS1Q8TCU4 4167 aa6.63□□□□□ -1.35
CUX1-205ENST00000425244 DNAH17Q9UFH2 4485 aa6.63□□□□□ -1.35
CUX1-205ENST00000425244 DNAH6Q9C0G6 4158 aa6.63□□□□□ -1.35
CUX1-205ENST00000425244 hDV103S1A0JD37 113 aa6.63□□□□□ -1.35
CUX1-205ENST00000425244 C9orf163Q8N9P6 203 aa6.62□□□□□ -1.35
CUX1-205ENST00000425244 PANO1I0J062 215 aa6.61□□□□□ -1.35
CUX1-205ENST00000425244 PSPHP1O15172 72 aa6.61□□□□□ -1.35
CUX1-205ENST00000425244 HCG22E2RYF7 251 aa6.59□□□□□ -1.35
CUX1-205ENST00000425244 RPL37AP61513 92 aaKnown RBP6.59□□□□□ -1.35
CUX1-205ENST00000425244 WFDC13Q8IUB5 93 aa6.59□□□□□ -1.35
CUX1-205ENST00000425244 TRAV22A0A0B4J277 110 aa6.59□□□□□ -1.35
CUX1-205ENST00000425244 PRR26Q8N8Z3 221 aa6.59□□□□□ -1.35
CUX1-205ENST00000425244 FAT2Q9NYQ8 4349 aa6.59□□□□□ -1.35
CUX1-205ENST00000425244 IGLV8-61A0A075B6I0 122 aa6.58□□□□□ -1.36
CUX1-205ENST00000425244 A8MU10 97 aa6.58□□□□□ -1.36
CUX1-205ENST00000425244 RTL8CO15255 209 aa6.58□□□□□ -1.36
CUX1-205ENST00000425244 IGLV5-52A0A0A0MRZ9 124 aa6.57□□□□□ -1.36
CUX1-205ENST00000425244 DNAH11Q96DT5 4516 aa6.57□□□□□ -1.36
CUX1-205ENST00000425244 C8orf87E5RJ46 101 aa6.56□□□□□ -1.36
CUX1-205ENST00000425244 DNAH5Q8TE73 4624 aa6.56□□□□□ -1.36
CUX1-205ENST00000425244 H0Y9J4 135 aa6.56□□□□□ -1.36
CUX1-205ENST00000425244 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP6.56□□□□□ -1.36
CUX1-205ENST00000425244 PKHD1P08F94 4074 aa6.56□□□□□ -1.36
CUX1-205ENST00000425244 C1orf64Q8NEQ6 169 aa6.55□□□□□ -1.36
CUX1-205ENST00000425244 PKD1P98161 4303 aa6.55□□□□□ -1.36
CUX1-205ENST00000425244 NDUFS5O43920 106 aa6.55□□□□□ -1.36
CUX1-205ENST00000425244 KRTAP10-2P60368 255 aa6.55□□□□□ -1.36
CUX1-205ENST00000425244 SPRR1BP22528 89 aa6.54□□□□□ -1.36
CUX1-205ENST00000425244 IGLV9-49A0A0B4J1Y8 123 aa6.53□□□□□ -1.36
CUX1-205ENST00000425244 LCE6AA0A183 80 aa6.53□□□□□ -1.36
CUX1-205ENST00000425244 A8MUN3 132 aa6.53□□□□□ -1.36
CUX1-205ENST00000425244 DNAH8Q96JB1 4490 aa6.52□□□□□ -1.36
CUX1-205ENST00000425244 SPACA4Q8TDM5 124 aa6.52□□□□□ -1.37
CUX1-205ENST00000425244 RYR2Q92736 4967 aa6.51□□□□□ -1.37
CUX1-205ENST00000425244 Q5VV11 94 aa6.5□□□□□ -1.37
CUX1-205ENST00000425244 KRTAP13-1Q8IUC0 172 aa6.5□□□□□ -1.37
CUX1-205ENST00000425244 PRR4Q16378 134 aa6.5□□□□□ -1.37
CUX1-205ENST00000425244 CASC2Q6XLA1 102 aa6.49□□□□□ -1.37
CUX1-205ENST00000425244 LINC00472Q9H8W2 130 aa6.49□□□□□ -1.37
CUX1-205ENST00000425244 A6NN06 94 aa6.48□□□□□ -1.37
CUX1-205ENST00000425244 RYR3Q15413 4870 aa6.48□□□□□ -1.37
CUX1-205ENST00000425244 A8MWP4 228 aa6.48□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 12.1 ms