RNA–Protein interactions for RNA: ENST00000395066.7

CLK3-202, Transcript of CDC like kinase 3, humanhuman

TSL 1 (best) BASIC

Gene CLK3, Length 2,621 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-202ENST00000395066 K7EQZ3 153 aa13.08□□□□□ -0.32
CLK3-202ENST00000395066 TENM2Q9NT68 2774 aa13.06□□□□□ -0.32
CLK3-202ENST00000395066 A0A096LNI7 61 aa13.06□□□□□ -0.32
CLK3-202ENST00000395066 DEFB116Q30KQ4 102 aa13.05□□□□□ -0.32
CLK3-202ENST00000395066 LINC00476Q8WZB0 136 aa13.04□□□□□ -0.32
CLK3-202ENST00000395066 ZCCHC13Q8WW36 166 aaKnown RBP13.03□□□□□ -0.32
CLK3-202ENST00000395066 hDV103S1A0JD37 113 aa13.03□□□□□ -0.32
CLK3-202ENST00000395066 IGLV2-33A0A075B6J2 118 aaPredicted RBP13.02□□□□□ -0.32
CLK3-202ENST00000395066 PKIGQ9Y2B9 76 aa13.02□□□□□ -0.33
CLK3-202ENST00000395066 DNAH7Q8WXX0 4024 aa12.99□□□□□ -0.33
CLK3-202ENST00000395066 HCG22E2RYF7 251 aa12.99□□□□□ -0.33
CLK3-202ENST00000395066 CHTF8P0CG12 524 aa12.98□□□□□ -0.33
CLK3-202ENST00000395066 IGFL1Q6UW32 110 aa12.97□□□□□ -0.33
CLK3-202ENST00000395066 C1orf64Q8NEQ6 169 aa12.97□□□□□ -0.33
CLK3-202ENST00000395066 KRTAP11-1Q8IUC1 163 aa12.97□□□□□ -0.33
CLK3-202ENST00000395066 PSCAO43653 123 aa12.96□□□□□ -0.33
CLK3-202ENST00000395066 LRCOL1A6NCL2 159 aa12.95□□□□□ -0.34
CLK3-202ENST00000395066 C16orf90A8MZG2 172 aa12.93□□□□□ -0.34
CLK3-202ENST00000395066 PHF5AQ7RTV0 110 aaKnown RBP12.92□□□□□ -0.34
CLK3-202ENST00000395066 A0A087WSZ3 146 aa12.91□□□□□ -0.34
CLK3-202ENST00000395066 RPL37AP61513 92 aaKnown RBP12.89□□□□□ -0.35
CLK3-202ENST00000395066 Q1T7F1 81 aa12.89□□□□□ -0.35
CLK3-202ENST00000395066 UBE2DNLQ8IWF7 75 aa12.88□□□□□ -0.35
CLK3-202ENST00000395066 WFDC13Q8IUB5 93 aa12.88□□□□□ -0.35
CLK3-202ENST00000395066 CYP4F30PQ9H0H9 118 aa12.88□□□□□ -0.35
CLK3-202ENST00000395066 PRR4Q16378 134 aa12.87□□□□□ -0.35
CLK3-202ENST00000395066 CNBPP62633 177 aaKnown RBP12.86□□□□□ -0.35
CLK3-202ENST00000395066 UBE2AP49459 152 aa12.85□□□□□ -0.35
CLK3-202ENST00000395066 NDUFB1O75438 58 aa12.84□□□□□ -0.35
CLK3-202ENST00000395066 IGLV8-61A0A075B6I0 122 aa12.83□□□□□ -0.36
CLK3-202ENST00000395066 C1orf195Q5TG92 126 aa12.83□□□□□ -0.36
CLK3-202ENST00000395066 MP68P56378 58 aa12.82□□□□□ -0.36
CLK3-202ENST00000395066 PLECQ15149 4684 aaKnown RBP12.8□□□□□ -0.36
CLK3-202ENST00000395066 TRAV22A0A0B4J277 110 aa12.78□□□□□ -0.36
CLK3-202ENST00000395066 PANO1I0J062 215 aa12.78□□□□□ -0.36
CLK3-202ENST00000395066 APLNQ9ULZ1 77 aa12.78□□□□□ -0.36
CLK3-202ENST00000395066 LINC00208Q96KT6 92 aa12.77□□□□□ -0.37
CLK3-202ENST00000395066 KRTAP29-1A8MX34 341 aaPredicted RBP12.76□□□□□ -0.37
CLK3-202ENST00000395066 PSPHP1O15172 72 aa12.76□□□□□ -0.37
CLK3-202ENST00000395066 PRR15Q8IV56 129 aa12.73□□□□□ -0.37
CLK3-202ENST00000395066 CASC2Q6XLA1 102 aa12.72□□□□□ -0.37
CLK3-202ENST00000395066 B9D2Q9BPU9 175 aa12.72□□□□□ -0.37
CLK3-202ENST00000395066 H0Y9P7 68 aa12.71□□□□□ -0.38
CLK3-202ENST00000395066 C9orf163Q8N9P6 203 aa12.69□□□□□ -0.38
CLK3-202ENST00000395066 DYNC2H1Q8NCM8 4307 aaKnown RBP12.68□□□□□ -0.38
CLK3-202ENST00000395066 H3BPC8 53 aa12.67□□□□□ -0.38
CLK3-202ENST00000395066 C14orf177Q52M58 125 aa12.67□□□□□ -0.38
CLK3-202ENST00000395066 A8MWP4 228 aa12.66□□□□□ -0.38
CLK3-202ENST00000395066 SPANXA2-OT1Q8N9U9 137 aa12.66□□□□□ -0.38
CLK3-202ENST00000395066 V9GYY9 64 aa12.66□□□□□ -0.38
CLK3-202ENST00000395066 LINC00472Q9H8W2 130 aa12.65□□□□□ -0.38
CLK3-202ENST00000395066 SPRR1BP22528 89 aa12.64□□□□□ -0.39
CLK3-202ENST00000395066 A8MUN3 132 aa12.64□□□□□ -0.39
CLK3-202ENST00000395066 NBDYA0A0U1RRE5 68 aa12.62□□□□□ -0.39
CLK3-202ENST00000395066 H0Y9J4 135 aa12.62□□□□□ -0.39
CLK3-202ENST00000395066 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP12.61□□□□□ -0.39
CLK3-202ENST00000395066 MDFIQ99750 246 aa12.61□□□□□ -0.39
CLK3-202ENST00000395066 STARD9Q9P2P6 4700 aa12.61□□□□□ -0.39
CLK3-202ENST00000395066 IGLV9-49A0A0B4J1Y8 123 aa12.6□□□□□ -0.39
CLK3-202ENST00000395066 Q6ZRN7 208 aaPredicted RBP12.59□□□□□ -0.39
CLK3-202ENST00000395066 FRAS1Q86XX4 4008 aa12.58□□□□□ -0.39
CLK3-202ENST00000395066 KRTAP13-1Q8IUC0 172 aa12.57□□□□□ -0.4
CLK3-202ENST00000395066 Q5VV11 94 aa12.56□□□□□ -0.4
CLK3-202ENST00000395066 Q8N9P0 234 aaPredicted RBP12.54□□□□□ -0.4
CLK3-202ENST00000395066 MMP24-AS1A0A0U1RRL7 71 aa12.54□□□□□ -0.4
CLK3-202ENST00000395066 LIMD2Q9BT23 127 aa12.51□□□□□ -0.41
CLK3-202ENST00000395066 KMT2AQ03164 3969 aa12.51□□□□□ -0.41
CLK3-202ENST00000395066 PMAIP1Q13794 54 aa12.5□□□□□ -0.41
CLK3-202ENST00000395066 ANAPC11Q9NYG5 84 aa12.5□□□□□ -0.41
CLK3-202ENST00000395066 HECTD4Q9Y4D8 3996 aa12.5□□□□□ -0.41
CLK3-202ENST00000395066 SPACA4Q8TDM5 124 aa12.49□□□□□ -0.41
CLK3-202ENST00000395066 A8MU10 97 aa12.47□□□□□ -0.41
CLK3-202ENST00000395066 PRKDCP78527 4128 aaKnown RBP12.46□□□□□ -0.41
CLK3-202ENST00000395066 CHKB-CPT1BH3BT56 60 aa12.46□□□□□ -0.42
CLK3-202ENST00000395066 Q96NJ1 140 aa12.46□□□□□ -0.42
CLK3-202ENST00000395066 PRR15LQ9BU68 103 aa12.45□□□□□ -0.42
CLK3-202ENST00000395066 VPS13DQ5THJ4 4388 aa12.45□□□□□ -0.42
CLK3-202ENST00000395066 DNAH8Q96JB1 4490 aa12.45□□□□□ -0.42
CLK3-202ENST00000395066 IGLV7-46A0A075B6I9 117 aa12.45□□□□□ -0.42
CLK3-202ENST00000395066 COA5Q86WW8 74 aa12.44□□□□□ -0.42
CLK3-202ENST00000395066 MOBPQ13875 183 aa12.44□□□□□ -0.42
CLK3-202ENST00000395066 DNAH2Q9P225 4427 aa12.44□□□□□ -0.42
CLK3-202ENST00000395066 SEC61GP60059 68 aa12.43□□□□□ -0.42
CLK3-202ENST00000395066 NUPR2A6NF83 97 aa12.43□□□□□ -0.42
CLK3-202ENST00000395066 A0A087WTM6 91 aa12.41□□□□□ -0.42
CLK3-202ENST00000395066 PSORS1C2Q9UIG4 136 aa12.41□□□□□ -0.42
CLK3-202ENST00000395066 PCOTHQ58A44 107 aa12.4□□□□□ -0.42
CLK3-202ENST00000395066 ASB16-AS1Q495Z4 193 aa12.39□□□□□ -0.43
CLK3-202ENST00000395066 TP53AIP1Q9HCN2 124 aa12.39□□□□□ -0.43
CLK3-202ENST00000395066 TGP01266 2768 aa12.39□□□□□ -0.43
CLK3-202ENST00000395066 FBN3Q75N90 2809 aa12.37□□□□□ -0.43
CLK3-202ENST00000395066 IGHV6-1A0A0B4J1U7 121 aa12.37□□□□□ -0.43
CLK3-202ENST00000395066 RTL8CO15255 209 aa12.37□□□□□ -0.43
CLK3-202ENST00000395066 CD164Q04900 197 aa12.36□□□□□ -0.43
CLK3-202ENST00000395066 WWC2-AS2Q96NR7 200 aa12.36□□□□□ -0.43
CLK3-202ENST00000395066 C8orf17Q9NRJ1 99 aa12.35□□□□□ -0.43
CLK3-202ENST00000395066 DNAH17Q9UFH2 4485 aa12.35□□□□□ -0.43
CLK3-202ENST00000395066 Q75L30 129 aa12.35□□□□□ -0.43
CLK3-202ENST00000395066 LOC101927531A0A1B0GV80 90 aa12.34□□□□□ -0.43
CLK3-202ENST00000395066 LINC00483Q53H64 154 aa12.34□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 56.7 ms