RNA–Protein interactions for RNA: ENST00000358808.6

CLIP1-202, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene CLIP1, Length 5,880 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-202ENST00000358808 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP6.37□□□□□ -1.39
CLIP1-202ENST00000358808 H1FX-AS1Q4G0G2 97 aa6.36□□□□□ -1.39
CLIP1-202ENST00000358808 FAM229BQ4G0N7 80 aa6.35□□□□□ -1.39
CLIP1-202ENST00000358808 TRIOO75962 3097 aa6.35□□□□□ -1.39
CLIP1-202ENST00000358808 VCANP13611 3396 aa6.35□□□□□ -1.39
CLIP1-202ENST00000358808 AKAP13Q12802 2813 aa6.35□□□□□ -1.39
CLIP1-202ENST00000358808 SZT2Q5T011 3432 aa6.34□□□□□ -1.39
CLIP1-202ENST00000358808 Q5VSD8 79 aa6.33□□□□□ -1.4
CLIP1-202ENST00000358808 CR1P17927 2039 aa6.31□□□□□ -1.4
CLIP1-202ENST00000358808 M0QZ58 72 aa6.31□□□□□ -1.4
CLIP1-202ENST00000358808 EYSQ5T1H1 3165 aa6.31□□□□□ -1.4
CLIP1-202ENST00000358808 TRANK1O15050 2925 aa6.3□□□□□ -1.4
CLIP1-202ENST00000358808 Q8N9P0 234 aaPredicted RBP6.3□□□□□ -1.4
CLIP1-202ENST00000358808 Q75L30 129 aa6.29□□□□□ -1.4
CLIP1-202ENST00000358808 CENPEQ02224 2701 aa6.28□□□□□ -1.4
CLIP1-202ENST00000358808 PRAC1Q96KF2 57 aa6.28□□□□□ -1.4
CLIP1-202ENST00000358808 OCR1Q9BZK8 76 aa6.27□□□□□ -1.41
CLIP1-202ENST00000358808 FLNAP21333 2647 aaKnown RBP6.25□□□□□ -1.41
CLIP1-202ENST00000358808 PLAC8Q9NZF1 115 aa6.25□□□□□ -1.41
CLIP1-202ENST00000358808 ITPR3Q14573 2671 aa6.25□□□□□ -1.41
CLIP1-202ENST00000358808 Q5W150 140 aa6.25□□□□□ -1.41
CLIP1-202ENST00000358808 FLG2Q5D862 2391 aaPredicted RBP6.24□□□□□ -1.41
CLIP1-202ENST00000358808 H3BS24 57 aa6.24□□□□□ -1.41
CLIP1-202ENST00000358808 MMP24-AS1A0A0U1RRL7 71 aa6.24□□□□□ -1.41
CLIP1-202ENST00000358808 STAB1Q9NY15 2570 aa6.23□□□□□ -1.41
CLIP1-202ENST00000358808 LINC01558Q9Y6Z2 57 aa6.23□□□□□ -1.41
CLIP1-202ENST00000358808 DNAH14Q0VDD8 3507 aa6.23□□□□□ -1.41
CLIP1-202ENST00000358808 ROMO1P60602 79 aa6.23□□□□□ -1.41
CLIP1-202ENST00000358808 RPL37P61927 97 aaKnown RBP6.22□□□□□ -1.41
CLIP1-202ENST00000358808 CHD6Q8TD26 2715 aa6.21□□□□□ -1.41
CLIP1-202ENST00000358808 SPEGQ15772 3267 aa6.21□□□□□ -1.42
CLIP1-202ENST00000358808 VPS13AQ96RL7 3174 aa6.2□□□□□ -1.42
CLIP1-202ENST00000358808 CYSTM1Q9H1C7 97 aa6.2□□□□□ -1.42
CLIP1-202ENST00000358808 ADM2Q7Z4H4 148 aa6.19□□□□□ -1.42
CLIP1-202ENST00000358808 OXTP01178 125 aa6.17□□□□□ -1.42
CLIP1-202ENST00000358808 Q5XG85 94 aa6.17□□□□□ -1.42
CLIP1-202ENST00000358808 COL6A3P12111 3177 aa6.16□□□□□ -1.42
CLIP1-202ENST00000358808 CFAP54Q96N23 3096 aa6.16□□□□□ -1.42
CLIP1-202ENST00000358808 NOTCH1P46531 2555 aa6.16□□□□□ -1.42
CLIP1-202ENST00000358808 FP248Q71RG6 208 aaPredicted RBP6.15□□□□□ -1.43
CLIP1-202ENST00000358808 TNRC18O15417 2968 aaPredicted RBP6.14□□□□□ -1.43
CLIP1-202ENST00000358808 LCE6AA0A183 80 aa6.14□□□□□ -1.43
CLIP1-202ENST00000358808 MYO15AQ9UKN7 3530 aa6.13□□□□□ -1.43
CLIP1-202ENST00000358808 NBEAL1Q6ZS30 2694 aa6.13□□□□□ -1.43
CLIP1-202ENST00000358808 LAMA1P25391 3075 aa6.13□□□□□ -1.43
CLIP1-202ENST00000358808 KRTAP21-3Q3LHN1 58 aa6.13□□□□□ -1.43
CLIP1-202ENST00000358808 WDFY4Q6ZS81 3184 aa6.12□□□□□ -1.43
CLIP1-202ENST00000358808 CFAP46Q8IYW2 2715 aa6.12□□□□□ -1.43
CLIP1-202ENST00000358808 Q8NDZ9 215 aa6.11□□□□□ -1.43
CLIP1-202ENST00000358808 HELZ2Q9BYK8 2649 aaKnown RBP6.1□□□□□ -1.43
CLIP1-202ENST00000358808 CELSR3Q9NYQ7 3312 aa6.1□□□□□ -1.43
CLIP1-202ENST00000358808 ZNF292O60281 2723 aa6.1□□□□□ -1.43
CLIP1-202ENST00000358808 C20orf166-AS1Q96NR2 134 aa6.1□□□□□ -1.43
CLIP1-202ENST00000358808 KRTAP10-1P60331 282 aa6.09□□□□□ -1.43
CLIP1-202ENST00000358808 SPATA8Q6RVD6 105 aa6.09□□□□□ -1.43
CLIP1-202ENST00000358808 REV3LO60673 3130 aa6.09□□□□□ -1.43
CLIP1-202ENST00000358808 Q5VV11 94 aa6.08□□□□□ -1.44
CLIP1-202ENST00000358808 SPTBN5Q9NRC6 3674 aaKnown RBP6.08□□□□□ -1.44
CLIP1-202ENST00000358808 UNC79Q9P2D8 2635 aa6.08□□□□□ -1.44
CLIP1-202ENST00000358808 LINC00472Q9H8W2 130 aa6.07□□□□□ -1.44
CLIP1-202ENST00000358808 TEP1Q99973 2627 aaKnown RBP6.07□□□□□ -1.44
CLIP1-202ENST00000358808 FRYLO94915 3013 aa6.06□□□□□ -1.44
CLIP1-202ENST00000358808 TEX15Q9BXT5 2789 aa6.06□□□□□ -1.44
CLIP1-202ENST00000358808 KRTAP10-2P60368 255 aa6.05□□□□□ -1.44
CLIP1-202ENST00000358808 GCN1Q92616 2671 aaKnown RBP6.04□□□□□ -1.44
CLIP1-202ENST00000358808 SPRR1AP35321 89 aa6.04□□□□□ -1.44
CLIP1-202ENST00000358808 MAP1AP78559 2803 aaPredicted RBP6.03□□□□□ -1.44
CLIP1-202ENST00000358808 SPRR1BP22528 89 aa6.03□□□□□ -1.44
CLIP1-202ENST00000358808 STAB2Q8WWQ8 2551 aa6.02□□□□□ -1.45
CLIP1-202ENST00000358808 SETXQ7Z333 2677 aaKnown RBP6.02□□□□□ -1.45
CLIP1-202ENST00000358808 KRTAP26-1Q6PEX3 210 aa6.02□□□□□ -1.45
CLIP1-202ENST00000358808 Q6ZR54 194 aa6.02□□□□□ -1.45
CLIP1-202ENST00000358808 COL6A5A8TX70 2615 aa6.02□□□□□ -1.45
CLIP1-202ENST00000358808 DMBT1Q9UGM3 2413 aaPredicted RBP6.02□□□□□ -1.45
CLIP1-202ENST00000358808 USP34Q70CQ2 3546 aa6.01□□□□□ -1.45
CLIP1-202ENST00000358808 KRTAP1-5Q9BYS1 174 aa6□□□□□ -1.45
CLIP1-202ENST00000358808 PANO1I0J062 215 aa5.99□□□□□ -1.45
CLIP1-202ENST00000358808 MGAQ8IWI9 3026 aa5.97□□□□□ -1.45
CLIP1-202ENST00000358808 KRTAP16-1A8MUX0 517 aa5.97□□□□□ -1.45
CLIP1-202ENST00000358808 NBEAL2Q6ZNJ1 2754 aa5.96□□□□□ -1.46
CLIP1-202ENST00000358808 MUC3AQ02505 3323 aa5.96□□□□□ -1.46
CLIP1-202ENST00000358808 BAHCC1Q9P281 2608 aa5.96□□□□□ -1.46
CLIP1-202ENST00000358808 A8MUU9 505 aa5.95□□□□□ -1.46
CLIP1-202ENST00000358808 FREM2Q5SZK8 3169 aa5.94□□□□□ -1.46
CLIP1-202ENST00000358808 IGSF10Q6WRI0 2623 aa5.91□□□□□ -1.46
CLIP1-202ENST00000358808 UBR5O95071 2799 aaPredicted RBP5.87□□□□□ -1.47
CLIP1-202ENST00000358808 A0A087X002 238 aa5.87□□□□□ -1.47
CLIP1-202ENST00000358808 C10orf95Q9H7T3 257 aa5.86□□□□□ -1.47
CLIP1-202ENST00000358808 A8MU10 97 aa5.85□□□□□ -1.47
CLIP1-202ENST00000358808 TNP1P09430 55 aa5.85□□□□□ -1.47
CLIP1-202ENST00000358808 NSD1Q96L73 2696 aaPredicted RBP5.84□□□□□ -1.47
CLIP1-202ENST00000358808 ASB16-AS1Q495Z4 193 aa5.83□□□□□ -1.48
CLIP1-202ENST00000358808 BOD1L1Q8NFC6 3051 aa5.83□□□□□ -1.48
CLIP1-202ENST00000358808 KRTAP25-1Q3LHN0 102 aa5.81□□□□□ -1.48
CLIP1-202ENST00000358808 DMDP11532 3685 aa5.81□□□□□ -1.48
CLIP1-202ENST00000358808 FRYQ5TBA9 3013 aa5.8□□□□□ -1.48
CLIP1-202ENST00000358808 WDFY3Q8IZQ1 3526 aa5.79□□□□□ -1.48
CLIP1-202ENST00000358808 KRTAP29-1A8MX34 341 aaPredicted RBP5.78□□□□□ -1.48
CLIP1-202ENST00000358808 DSPP15924 2871 aaKnown RBP5.77□□□□□ -1.49
CLIP1-202ENST00000358808 NDUFAF8A1L188 74 aa5.77□□□□□ -1.49
Retrieved 100 of 20,778 RNA–protein pairs in 132.2 ms